FvH4_6g22750
BZIP Family

Seed dormancy control

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
16391043 .. 16397776
6734 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22750.t4

Sequence Viewer

Length: 1611 bp
ATGGGGTTTTCGAGAACTTTTGAGGAGGCAGAAGAAAGAGCAGGAGAGCAACATCGATTGGAAACAAAGCTTGCTAGTTTCATGGCTTCCAGTCTTCAAGGAAATCAGCTCGACCCGCAACAACAACAACAACAACAACAAGAGCATCATCATCAAAGTCATCATCAAATACAAAACCACCACCACCATCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAACAACAACAGCATCATCATGAAATTCAATACGCAACGATGCAGCCATCATCCTCCAACATCCCATCTGTGAACTTCATAGGAAGCAGCAAAGACAGTGGAGCATATGATCTGGGCGAGCTAGATCAAGCCCTTTTCCTCTACCTTGATGGACAACAACAAGAGCATCATCATCATCATCAAGCTCCCCATCACGTTCAAGACCAACGACATCAAACTAGCTCAGGAATGAGGCCTCCGACTTTGAACATCTTCCCATCTCAGCCTATGCACGTAGAGCCATCATCAACCAAAGGTGTTAGTACTGCTGGAATAGTTTCTTCTGCAACGAGTGGTTCAAAGAGACCATCAGAACCGTCCATGGAGTTGGCCAACCCACGCAAAATTGATGCTGCTGCTCCATCTGGACCTCCTGAACCTGCCAAGACAATCAAACGTGAGGGTAACCGCAAAGGACCAACTACATCAAGTTCAGAGCAAGAAGGACCTAAAACACCAGACCCTAAGACACTGAGACGGCTTGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTCAGAAAGAAGGCATATGTTCAGCAGTTAGAGTCGAGTAGGATTAAGCTCACACAGCTGGAACAAGAGCTGCAAAGAGCTAGAACTCAGGGCATTTTCTTTGGAGGTGGTCTTGTAGGAGCAGAACAAGGAGTTCCAGTTGGTATAAACAACATTAGCTCAGACGCTGCTGTTTTCGACATAGAGTATGCTCGCTGGCTCGAGGAGCACCACCGCCTGATGTGTGAACTCCGAGCAGCTGTGCAAGAGCATTTGCCCGAGAATGAGCTGAGGCTGTTTGTGGACAACTGTTTGGCACACTATGATGAGGTGATGAACCTCAAGAGCATGGTGGCCAAAACCGATGTGTTTCACATTTTTTCAGGCATGTGGAAGACTCCAGCTGAAAGATGCTTCATGTGGATGGGTGGATTCCGGCCCTCTGAGGTCATTAAGATTATTGTGACCCAAATCGAGCCACTGACGGAGCAGCAACTAATGGCTATTTGTTCATTACAACAATCCACGAGTGAAGCTGAAGACGCTCTCACCCAAGGGCTTGAAGCTCTGAACCAGTCTCTCTCGGACACCATAGCCTCCGACTCACTGAGCATGCCTCCTAACATGGCTAACTACATGGGTCAGATGGCTTTAGCCATGAACAAGCTCTCTACCCTCGAAGGGTTCGTCAGACAGGCTGATAATCTGAGGCTGCAGACGATTCACCGGCTGCAAACACTCCTGACCACCCGCCAATCGGCACGGTGTTTGCTGGCAATCGCCGAGTACTTCCATCGTCTCCGAGCTCTCAGCTCTCTCTGGATGGGCCGTCCTAGACAAGATCATCAAGGCTAA

Protein Analysis

537

Amino Acids

60.53

Weight (kDa)

6.67

Isoelectric Point (pI)

67.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 90 - 134 1.4e-07 Basic region leucine zipper
bZIP_1 PF00170 93 - 133 2.5e-08 bZIP transcription factor
DOG1 PF14144 183 - 257 4.2e-33 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 649
AciI CCGC 4 cut(s) 116, 670, 991, 1507
AcoI YGGCCR 2 cut(s) 591, 1110
AcsI RAATTY 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 1314
AfaI GTAC 2 cut(s) 526, 1544
AfiI CCNNNNNNNGG 2 cut(s) 1437, 1513
AgsI TTSAA 6 cut(s) 98, 251, 422, 469, 561, 1319
AjnI CCWGG 1 cut(s) 764
Alw21I GWGCWC 2 cut(s) 987, 1564
Alw26I GTCTC 4 cut(s) 559, 730, 1338, 1559
AlwNI CAGNNNCTG 1 cut(s) 944
Ama87I CYCGRG 2 cut(s) 977, 1034
AoxI GGCC 5 cut(s) 455, 591, 1110, 1193, 1582
ApoI RAATTY 1 cut(s) 246
ArsI GACNNNNNNTTYG 2 cut(s) 1428, 1460
Asp700I GAANNNNTTC 2 cut(s) 473, 538
AspS9I GGNCC 5 cut(s) 629, 677, 707, 1194, 1582
AsuHPI GGTGA 3 cut(s) 1099, 1297, 1472
AvaI CYCGRG 2 cut(s) 977, 1034
AvaII GGWCC 3 cut(s) 629, 677, 707
BalI TGGCCA 2 cut(s) 593, 1112
BanII GRGCYC 1 cut(s) 1564
BauI CACGAG 1 cut(s) 1282
BbsI GAAGAC 3 cut(s) 86, 1157, 1302
Bbv12I GWGCWC 2 cut(s) 987, 1564
BbvCI CCTCAGC 1 cut(s) 1046
BceAI ACGGC 2 cut(s) 755, 1569
BciT130I CCWGG 1 cut(s) 766
BcoDI GTCTC 4 cut(s) 559, 730, 1338, 1559
BfaI CTAG 5 cut(s) 75, 344, 441, 858, 1590
BfmI CTRYAG 1 cut(s) 1469
BfuAI ACCTGC 1 cut(s) 649
BmcAI AGTACT 2 cut(s) 526, 1544
Bme1390I CCNGG 1 cut(s) 766
Bme18I GGWCC 3 cut(s) 629, 677, 707
BmeT110I CYCGRG 2 cut(s) 977, 1034
BmgT120I GGNCC 5 cut(s) 629, 677, 707, 1194, 1582
BmrFI CCNGG 1 cut(s) 766
BmsI GCATC 6 cut(s) 154, 244, 252, 397, 601, 1157
BpiI GAAGAC 3 cut(s) 86, 1157, 1302
BplI GAGNNNNNCTC 2 cut(s) 1357, 1389
BpmI CTGGAG 1 cut(s) 1140
Bpu10I CCTNAGC 2 cut(s) 445, 1046
BpuEI CTTGAG 1 cut(s) 1082
Bsa29I ATCGAT 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 496
BsaI GGTCTC 1 cut(s) 559
BsaJI CCNNGG 2 cut(s) 582, 1309
BsaXI ACNNNNNCTCC 2 cut(s) 900, 930
Bsc4I CCNNNNNNNGG 2 cut(s) 1437, 1513
Bse118I RCCGGY 1 cut(s) 1482
Bse1I ACTGG 3 cut(s) 90, 914, 1330
BseBI CCWGG 1 cut(s) 766
BseCI ATCGAT 1 cut(s) 55
BseDI CCNNGG 2 cut(s) 582, 1309
BseGI GGATG 4 cut(s) 272, 282, 1185, 1584
BseLI CCNNNNNNNGG 2 cut(s) 1437, 1513
BseNI ACTGG 3 cut(s) 90, 914, 1330
BseRI GAGGAG 2 cut(s) 38, 995
BshFI GGCC 5 cut(s) 457, 593, 1112, 1195, 1584
BshVI ATCGAT 1 cut(s) 55
BsiHKAI GWGCWC 2 cut(s) 987, 1564
BsiHKCI CYCGRG 2 cut(s) 977, 1034
BsiSI CCGG 2 cut(s) 1192, 1483
BslI CCNNNNNNNGG 2 cut(s) 1437, 1513
BsmAI GTCTC 4 cut(s) 559, 730, 1338, 1559
BsmBI CGTCTC 2 cut(s) 730, 1559
BsnI GGCC 5 cut(s) 457, 593, 1112, 1195, 1584
Bso31I GGTCTC 1 cut(s) 559
BsoBI CYCGRG 2 cut(s) 977, 1034
Bsp1286I GDGCHC 2 cut(s) 987, 1564
Bsp143I GATC 3 cut(s) 331, 346, 1597
Bsp19I CCATGG 1 cut(s) 582
BspACI CCGC 4 cut(s) 116, 670, 991, 1507
BspANI GGCC 5 cut(s) 457, 593, 1112, 1195, 1584
BspDI ATCGAT 1 cut(s) 55
BspHI TCATGA 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 1473
BspMI ACCTGC 1 cut(s) 649
BspTNI GGTCTC 1 cut(s) 559
BsrFI RCCGGY 1 cut(s) 1482
BsrI ACTGG 3 cut(s) 90, 914, 1330
BssAI RCCGGY 1 cut(s) 1482
BssECI CCNNGG 2 cut(s) 582, 1309
BssMI GATC 3 cut(s) 331, 346, 1597
BssSI CACGAG 1 cut(s) 1282
BssT1I CCWWGG 2 cut(s) 582, 1309
Bst2BI CACGAG 1 cut(s) 1282
Bst2UI CCWGG 1 cut(s) 766
Bst4CI ACNGT 4 cut(s) 320, 579, 1067, 1521
BstBAI YACGTR 1 cut(s) 496
BstC8I GCNNGC 8 cut(s) 72, 341, 744, 776, 970, 974, 1370, 1530
BstDSI CCRYGG 1 cut(s) 582
BstEII GGTNACC 1 cut(s) 665
BstF5I GGATG 4 cut(s) 272, 282, 1185, 1584
BstKTI GATC 3 cut(s) 334, 349, 1600
BstMAI GTCTC 4 cut(s) 559, 730, 1338, 1559
BstMBI GATC 3 cut(s) 331, 346, 1597
BstMWI GCNNNNNNNGC 8 cut(s) 115, 199, 202, 208, 499, 832, 982, 1298
BstNI CCWGG 1 cut(s) 766
BstNSI RCATGY 2 cut(s) 1147, 1372
BstPI GGTNACC 1 cut(s) 665
BstSCI CCNGG 1 cut(s) 764
BstSFI CTRYAG 1 cut(s) 1469
BstV2I GAAGAC 3 cut(s) 86, 1157, 1302
BstXI CCANNNNNNTGG 1 cut(s) 589
Bsu15I ATCGAT 1 cut(s) 55
BsuRI GGCC 5 cut(s) 457, 593, 1112, 1195, 1584
BsuTUI ATCGAT 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 582
BtsCI GGATG 4 cut(s) 272, 282, 1185, 1584
BtsIMutI CAGTG 4 cut(s) 325, 731, 1235, 1361
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 8 cut(s) 72, 341, 744, 776, 970, 974, 1370, 1530
CaiI CAGNNNCTG 1 cut(s) 944
CciI TCATGA 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 1482
Cfr13I GGNCC 5 cut(s) 629, 677, 707, 1194, 1582
ClaI ATCGAT 1 cut(s) 55
CseI GACGC 2 cut(s) 950, 1307
Csp6I GTAC 2 cut(s) 525, 1543
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviQI GTAC 2 cut(s) 525, 1543
DpnI GATC 3 cut(s) 333, 348, 1599
DpnII GATC 3 cut(s) 331, 346, 1597
EaeI YGGCCR 2 cut(s) 591, 1110
Ecl136II GAGCTC 1 cut(s) 1562
Eco130I CCWWGG 2 cut(s) 582, 1309
Eco147I AGGCCT 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 1564
Eco31I GGTCTC 1 cut(s) 559
Eco47I GGWCC 3 cut(s) 629, 677, 707
Eco53kI GAGCTC 1 cut(s) 1562
Eco57I CTGAAG 1 cut(s) 1314
Eco88I CYCGRG 2 cut(s) 977, 1034
Eco91I GGTNACC 1 cut(s) 665
EcoICRI GAGCTC 1 cut(s) 1562
EcoO109I RGGNCCY 1 cut(s) 707
EcoO65I GGTNACC 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 764
EcoT14I CCWWGG 2 cut(s) 582, 1309
EcoT38I GRGCYC 1 cut(s) 1564
ErhI CCWWGG 2 cut(s) 582, 1309
Esp3I CGTCTC 2 cut(s) 730, 1559
FauI CCCGC 2 cut(s) 123, 1514
FauNDI CATATG 2 cut(s) 328, 793
FokI GGATG 4 cut(s) 259, 269, 1192, 1591
FriOI GRGCYC 1 cut(s) 1564
FspBI CTAG 5 cut(s) 75, 344, 441, 858, 1590
GsuI CTGGAG 1 cut(s) 1140
HaeIII GGCC 5 cut(s) 457, 593, 1112, 1195, 1584
HapII CCGG 2 cut(s) 1192, 1483
HgaI GACGC 2 cut(s) 950, 1307
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 5 cut(s) 809, 1153, 1188, 1358, 1477
HpaII CCGG 2 cut(s) 1192, 1483
HphI GGTGA 3 cut(s) 1099, 1297, 1472
Hpy166II GTNNAC 3 cut(s) 295, 1004, 1060
Hpy188III TCNNGA 9 cut(s) 12, 242, 422, 447, 627, 635, 1099, 1498, 1576
Hpy8I GTNNAC 3 cut(s) 295, 1004, 1060
HpyAV CCTTC 3 cut(s) 698, 781, 1430
HpyCH4III ACNGT 4 cut(s) 320, 579, 1067, 1521
HpyCH4IV ACGT 3 cut(s) 417, 495, 658
HpyCH4V TGCA 7 cut(s) 265, 493, 548, 850, 1021, 1471, 1489
HpyF10VI GCNNNNNNNGC 8 cut(s) 115, 199, 202, 208, 499, 832, 982, 1298
HpySE526I ACGT 3 cut(s) 417, 495, 658
Kzo9I GATC 3 cut(s) 331, 346, 1597
LmnI GCTCC 6 cut(s) 323, 412, 625, 896, 982, 1243
LweI GCATC 6 cut(s) 154, 244, 252, 397, 601, 1157
MaeI CTAG 5 cut(s) 75, 344, 441, 858, 1590
MaeII ACGT 3 cut(s) 417, 495, 658
MaeIII GTNAC 2 cut(s) 665, 1219
MalI GATC 3 cut(s) 333, 348, 1599
MboI GATC 3 cut(s) 331, 346, 1597
MboII GAAGA 6 cut(s) 44, 86, 466, 534, 1162, 1307
MhlI GDGCHC 2 cut(s) 987, 1564
MlsI TGGCCA 2 cut(s) 593, 1112
MluCI AATT 2 cut(s) 246, 606
MluNI TGGCCA 2 cut(s) 593, 1112
MlyI GAGTC 3 cut(s) 818, 1147, 1352
MmeI TCCRAC 3 cut(s) 303, 485, 1380
Mox20I TGGCCA 2 cut(s) 593, 1112
MroXI GAANNNNTTC 2 cut(s) 473, 538
MscI TGGCCA 2 cut(s) 593, 1112
MseI TTAA 2 cut(s) 822, 1209
MslI CAYNNNNRTG 3 cut(s) 240, 1080, 1178
Msp20I TGGCCA 2 cut(s) 593, 1112
MspA1I CMGCKG 3 cut(s) 835, 1016, 1160
MspI CCGG 2 cut(s) 1192, 1483
MspR9I CCNGG 1 cut(s) 766
MvaI CCWGG 1 cut(s) 766
MwoI GCNNNNNNNGC 8 cut(s) 115, 199, 202, 208, 499, 832, 982, 1298
NcoI CCATGG 1 cut(s) 582
NdeI CATATG 2 cut(s) 328, 793
NdeII GATC 3 cut(s) 331, 346, 1597
NmeAIII GCCGAG 1 cut(s) 1564
NmuCI GTSAC 1 cut(s) 1219
NspI RCATGY 2 cut(s) 1147, 1372
PaeI GCATGC 1 cut(s) 1372
PaeR7I CTCGAG 1 cut(s) 977
PagI TCATGA 1 cut(s) 241
PceI AGGCCT 1 cut(s) 457
PcsI WCGNNNNNNNCGW 1 cut(s) 1440
PdmI GAANNNNTTC 2 cut(s) 473, 538
PfeI GAWTC 2 cut(s) 1188, 1477
PleI GAGTC 3 cut(s) 817, 1147, 1352
PpsI GAGTC 3 cut(s) 817, 1147, 1352
Ppu21I YACGTR 1 cut(s) 496
PpuMI RGGWCCY 1 cut(s) 707
Psp124BI GAGCTC 1 cut(s) 1564
Psp5II RGGWCCY 1 cut(s) 707
Psp6I CCWGG 1 cut(s) 764
PspEI GGTNACC 1 cut(s) 665
PspGI CCWGG 1 cut(s) 764
PspPI GGNCC 5 cut(s) 629, 677, 707, 1194, 1582
PspPPI RGGWCCY 1 cut(s) 707
PspXI VCTCGAGB 1 cut(s) 977
PstI CTGCAG 1 cut(s) 1473
PstNI CAGNNNCTG 1 cut(s) 944
PvuII CAGCTG 3 cut(s) 835, 1016, 1160
RsaI GTAC 2 cut(s) 526, 1544
RsaNI GTAC 2 cut(s) 525, 1543
RseI CAYNNNNRTG 3 cut(s) 240, 1080, 1178
SacI GAGCTC 1 cut(s) 1564
SaqAI TTAA 2 cut(s) 822, 1209
Sau3AI GATC 3 cut(s) 331, 346, 1597
Sau96I GGNCC 5 cut(s) 629, 677, 707, 1194, 1582
ScaI AGTACT 2 cut(s) 526, 1544
SchI GAGTC 3 cut(s) 818, 1147, 1352
ScrFI CCNGG 1 cut(s) 766
SduI GDGCHC 2 cut(s) 987, 1564
SfaNI GCATC 6 cut(s) 154, 244, 252, 397, 601, 1157
SfcI CTRYAG 1 cut(s) 1469
Sfr274I CTCGAG 1 cut(s) 977
SinI GGWCC 3 cut(s) 629, 677, 707
SlaI CTCGAG 1 cut(s) 977
SmiMI CAYNNNNRTG 3 cut(s) 240, 1080, 1178
SmlI CTYRAG 2 cut(s) 977, 1097
SmoI CTYRAG 2 cut(s) 977, 1097
SphI GCATGC 1 cut(s) 1372
Sse9I AATT 2 cut(s) 246, 606
SseBI AGGCCT 1 cut(s) 457
SsiI CCGC 4 cut(s) 116, 670, 991, 1507
SspMI CTAG 5 cut(s) 75, 344, 441, 858, 1590
SstI GAGCTC 1 cut(s) 1564
StuI AGGCCT 1 cut(s) 457
StyD4I CCNGG 1 cut(s) 764
StyI CCWWGG 2 cut(s) 582, 1309
TaaI ACNGT 4 cut(s) 320, 579, 1067, 1521
TaiI ACGT 3 cut(s) 420, 498, 661
TaqI TCGA 8 cut(s) 11, 55, 111, 812, 954, 978, 1230, 1434
TasI AATT 2 cut(s) 246, 606
TatI WGTACW 2 cut(s) 524, 1542
TfiI GAWTC 2 cut(s) 1188, 1477
Tru1I TTAA 2 cut(s) 822, 1209
Tru9I TTAA 2 cut(s) 822, 1209
TscAI CASTG 4 cut(s) 325, 738, 1242, 1368
TseFI GTSAC 1 cut(s) 1219
Tsp45I GTSAC 1 cut(s) 1219
TspDTI ATGAA 7 cut(s) 70, 258, 289, 1106, 1162, 1257, 1430
TspGWI ACGGA 1 cut(s) 1256
TspRI CASTG 4 cut(s) 325, 738, 1242, 1368
VpaK11BI GGWCC 3 cut(s) 629, 677, 707
XapI RAATTY 1 cut(s) 246
XceI RCATGY 2 cut(s) 1147, 1372
XhoI CTCGAG 1 cut(s) 977
XmnI GAANNNNTTC 2 cut(s) 473, 538
XspI CTAG 5 cut(s) 75, 344, 441, 858, 1590
ZrmI AGTACT 2 cut(s) 526, 1544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.