Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009463

Physical Location & Seq

Genomic Coordinates Forward (+)

26158700 .. 26165084

Gene Structure 6385 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44538

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1563 bp

ATGGGGTTTTCGAGAGCTTTTGAGGAGGCAGAAGAAAGAGCAGGAGAGCAACCTCAATTGGAAACAAAGCTCGCTAGTTTCATGGCTTCCAGTCTTCAAGGAAATCAACTCAACCCGCAACAACAGCAACCACAACAACAAGACCATCATCATCATCATCATCAGCAGCAGCAACAGCAACAACAACAGCATCATCATGAAATTCAATACGGAATGATGCAGTCATCATCCTCCAACATCCCATCTGGGAACTTCATGGGAAGCAGCAAAGACAGTGGAGCATATGATCTGGGCGAGCTAGATCAAGCCCTTTTCCTCTACCTTGATGGACAACAAGATCATCATCATCATCATCAAGCTCCTCATCACGTTCAAGACCAACGACATCAAACTAGCTCAGGAATGAGGCCTCCAACTTTGAACATCTTTCCATCTGAGCCTATGCATGTAGAGCCATCATCAACCAAAGGTGTTAGTACTGCAGGAATAGTTTCTTCTGCAACGAGTGGTTCAAAGAGACCATCAGAGCCATCCATGGAGTTGGCCAACCCACGCAAAATTGATGCTGCTGCTCCATCTGGACTTCCTGAACCTGCCAAGACTATCAAGCGTGAGGGTAACCGCAAGGGACCAACTACATCAAGTTCAGAGCAAGAAGGACCAAAAACACCAGACCCTAAGACACTGAGAAGGCTTGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTCAGAAAAAAGGCATATGTTCAGCAGTTAGAGTCGAGTAGGATTAAGCTCACCCAGCTGGAACAAGAGCTGCAAAGAGCTAGAACCCAGGGCATGTTCTTTGGAGGTGGTCTTGTAGGAGCAGAACAAGGTGTTCCAGTTGGTATAAACAACATTAGCTCAGACGCTGCAGTTTTCGACATGGAGTATGCTCGTTGGCTTGAGGAGCACCACCGCCTGATGTGTGAGCTCCGAGCAGCTGTGCAAGAGCATTTGCCAGAGAATGAGCTGAGGCTGTTTGTGGACAACTGTTTGGCACACTATGATGAGGTGATGAACCTCAAGAGCATGGTGGCCAAAACCGATGTGTTTCACATTGTTTCAGGCATGTGGAAGACTCCAGCTGAAAGATGCTTCATGTGGATGGGTGGATTCCGGCCCTCTGAGGTCATTAAGATTATTGTGACCCAAATCGAGCCACTGACGGAGCAGCAACTAATGGCTATTTGTTCGTTACAACAATCCACAAGTGAAGCTGAAGACGCTCTCACCCAAGGGCTTGAAGCTCTGAACCAGTCTCTCTCAGACACCATAGCTTCCGATTCACTGAGCATGCCCCCTAACATGGCTAACTACATGGGTCAGATGGCTTTAGCCATGAACAAGCTCTCTACTCTTGAAGGGTTCGTCAGACAGGCTGATAATCTGAGGCTGCAGACGATTCACCGGCTGCAAACACTCCTGACCACTCGCCAATCAGCGCGGTGTTTGCTGGCAATCGCCGAGTACTTCCATCGCCTCCGAGCTCTCAGCTCTCTCTGGATGGGCCGTCCTAGACAAGATCATCAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

520

Amino Acids

58.35

Weight (kDa)

6.51

Isoelectric Point (pI)

64.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	224 - 268	2.1e-07	Basic region leucine zipper
bZIP_1	PF00170	227 - 267	3.7e-08	bZIP transcription factor
DOG1	PF14144	317 - 391	2e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06839 AT5G06839 AT5G06839
fragaria_vesca	FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750
malus_domestica	MD12G1061900.v1.1 MD14G1062300.v1.1
prunus_persica	Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1
pyrus_communis	pycom12g05460 pycom14g04990
rosa_chinensis	RchiOBHm_Chr3g0480361
rosa_laevigata	RLG00000023490
rosa_roxburghii	Rroxscaffold_6G00401490
rosa_rugosa	Rorug03G0183200
rosa_samantha	Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400
rosa_wichuraiana	Rw3G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	601
AccII	CGCG	1 cut(s)	1471
AciI	CCGC	4 cut(s)	116, 622, 943, 1471
AcoI	YGGCCR	2 cut(s)	543, 1062
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	1266
AfaI	GTAC	2 cut(s)	478, 1496
AfiI	CCNNNNNNNGG	1 cut(s)	1333
AgsI	TTSAA	7 cut(s)	98, 206, 374, 421, 513, 1271, 1388
AjnI	CCWGG	2 cut(s)	716, 816
Alw21I	GWGCWC	3 cut(s)	939, 960, 1516
Alw26I	GTCTC	2 cut(s)	511, 1290
AlwNI	CAGNNNCTG	1 cut(s)	896
AoxI	GGCC	5 cut(s)	407, 543, 1062, 1145, 1534
ApoI	RAATTY	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	490
AspLEI	GCGC	1 cut(s)	1471
AspS9I	GGNCC	4 cut(s)	629, 659, 1146, 1534
AsuHPI	GGTGA	4 cut(s)	772, 1051, 1249, 1424
AvaII	GGWCC	2 cut(s)	629, 659
BalI	TGGCCA	2 cut(s)	545, 1064
BanII	GRGCYC	2 cut(s)	960, 1516
BbsI	GAAGAC	3 cut(s)	86, 1109, 1254
Bbv12I	GWGCWC	3 cut(s)	939, 960, 1516
BbvCI	CCTCAGC	1 cut(s)	998
BceAI	ACGGC	1 cut(s)	1521
BciT130I	CCWGG	2 cut(s)	718, 818
BcoDI	GTCTC	2 cut(s)	511, 1290
BfaI	CTAG	5 cut(s)	75, 299, 393, 810, 1542
BfmI	CTRYAG	3 cut(s)	480, 897, 1421
BfuAI	ACCTGC	1 cut(s)	601
BmcAI	AGTACT	2 cut(s)	478, 1496
Bme1390I	CCNGG	2 cut(s)	718, 818
Bme18I	GGWCC	2 cut(s)	629, 659
BmgT120I	GGNCC	4 cut(s)	629, 659, 1146, 1534
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	2 cut(s)	718, 818
BmsI	GCATC	4 cut(s)	199, 207, 553, 1109
BpiI	GAAGAC	3 cut(s)	86, 1109, 1254
BpmI	CTGGAG	1 cut(s)	1092
Bpu10I	CCTNAGC	2 cut(s)	397, 998
BpuEI	CTTGAG	2 cut(s)	950, 1034
BsaBI	GATNNNNATC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	4 cut(s)	534, 816, 817, 1261
Bsc4I	CCNNNNNNNGG	1 cut(s)	1333
Bse118I	RCCGGY	1 cut(s)	1434
Bse1I	ACTGG	3 cut(s)	90, 866, 1282
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	718, 818
BseDI	CCNNGG	4 cut(s)	534, 816, 817, 1261
BseGI	GGATG	5 cut(s)	227, 237, 530, 1137, 1536
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	1 cut(s)	1333
BseNI	ACTGG	3 cut(s)	90, 866, 1282
BseRI	GAGGAG	3 cut(s)	38, 351, 947
BseYI	CCCAGC	1 cut(s)	783
Bsh1236I	CGCG	1 cut(s)	1471
BshFI	GGCC	5 cut(s)	409, 545, 1064, 1147, 1536
BsiHKAI	GWGCWC	3 cut(s)	939, 960, 1516
BsiSI	CCGG	2 cut(s)	1144, 1435
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	1 cut(s)	1333
BsmAI	GTCTC	2 cut(s)	511, 1290
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	5 cut(s)	409, 545, 1064, 1147, 1536
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	3 cut(s)	939, 960, 1516
Bsp143I	GATC	4 cut(s)	286, 301, 337, 1549
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	4 cut(s)	116, 622, 943, 1471
BspANI	GGCC	5 cut(s)	409, 545, 1064, 1147, 1536
BspFNI	CGCG	1 cut(s)	1471
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	630
BspMAI	CTGCAG	3 cut(s)	484, 901, 1425
BspMI	ACCTGC	1 cut(s)	601
BspTNI	GGTCTC	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	1434
BsrI	ACTGG	3 cut(s)	90, 866, 1282
BssAI	RCCGGY	1 cut(s)	1434
BssECI	CCNNGG	4 cut(s)	534, 816, 817, 1261
BssMI	GATC	4 cut(s)	286, 301, 337, 1549
BssT1I	CCWWGG	2 cut(s)	534, 1261
Bst2UI	CCWGG	2 cut(s)	718, 818
Bst4CI	ACNGT	2 cut(s)	275, 1019
BstC8I	GCNNGC	6 cut(s)	72, 296, 696, 728, 1322, 1482
BstDSI	CCRYGG	1 cut(s)	534
BstEII	GGTNACC	1 cut(s)	617
BstF5I	GGATG	5 cut(s)	227, 237, 530, 1137, 1536
BstFNI	CGCG	1 cut(s)	1471
BstHHI	GCGC	1 cut(s)	1471
BstKTI	GATC	4 cut(s)	289, 304, 340, 1552
BstMAI	GTCTC	2 cut(s)	511, 1290
BstMBI	GATC	4 cut(s)	286, 301, 337, 1549
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 175, 451, 784, 934, 1250, 1477
BstNI	CCWGG	2 cut(s)	718, 818
BstNSI	RCATGY	4 cut(s)	449, 826, 1099, 1324
BstPI	GGTNACC	1 cut(s)	617
BstSCI	CCNGG	2 cut(s)	716, 816
BstSFI	CTRYAG	3 cut(s)	480, 897, 1421
BstUI	CGCG	1 cut(s)	1471
BstV2I	GAAGAC	3 cut(s)	86, 1109, 1254
BstXI	CCANNNNNNTGG	1 cut(s)	541
BsuRI	GGCC	5 cut(s)	409, 545, 1064, 1147, 1536
BtgI	CCRYGG	1 cut(s)	534
BtgZI	GCGATG	1 cut(s)	1487
BtsCI	GGATG	5 cut(s)	227, 237, 530, 1137, 1536
BtsIMutI	CAGTG	4 cut(s)	280, 683, 1187, 1313
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	6 cut(s)	72, 296, 696, 728, 1322, 1482
CaiI	CAGNNNCTG	1 cut(s)	896
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	1471
Cfr10I	RCCGGY	1 cut(s)	1434
Cfr13I	GGNCC	4 cut(s)	629, 659, 1146, 1534
CseI	GACGC	2 cut(s)	902, 1259
Csp6I	GTAC	2 cut(s)	477, 1495
CspCI	CAANNNNNGTGG	2 cut(s)	256, 291
CviQI	GTAC	2 cut(s)	477, 1495
DpnI	GATC	4 cut(s)	288, 303, 339, 1551
DpnII	GATC	4 cut(s)	286, 301, 337, 1549
EaeI	YGGCCR	2 cut(s)	543, 1062
Ecl136II	GAGCTC	2 cut(s)	958, 1514
Eco130I	CCWWGG	2 cut(s)	534, 1261
Eco147I	AGGCCT	1 cut(s)	409
Eco24I	GRGCYC	2 cut(s)	960, 1516
Eco31I	GGTCTC	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	629, 659
Eco53kI	GAGCTC	2 cut(s)	958, 1514
Eco57I	CTGAAG	1 cut(s)	1266
Eco91I	GGTNACC	1 cut(s)	617
EcoICRI	GAGCTC	2 cut(s)	958, 1514
EcoO65I	GGTNACC	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	716, 816
EcoT14I	CCWWGG	2 cut(s)	534, 1261
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	2 cut(s)	960, 1516
ErhI	CCWWGG	2 cut(s)	534, 1261
FaqI	GGGAC	1 cut(s)	642
FauI	CCCGC	1 cut(s)	123
FauNDI	CATATG	2 cut(s)	283, 745
FokI	GGATG	5 cut(s)	214, 224, 517, 1144, 1543
FriOI	GRGCYC	2 cut(s)	960, 1516
FspBI	CTAG	5 cut(s)	75, 299, 393, 810, 1542
GlaI	GCGC	1 cut(s)	1470
GsaI	CCCAGC	1 cut(s)	787
GsuI	CTGGAG	1 cut(s)	1092
HaeIII	GGCC	5 cut(s)	409, 545, 1064, 1147, 1536
HapII	CCGG	2 cut(s)	1144, 1435
HgaI	GACGC	2 cut(s)	902, 1259
HhaI	GCGC	1 cut(s)	1471
Hin6I	GCGC	1 cut(s)	1469
HinP1I	GCGC	1 cut(s)	1469
HinfI	GANTC	5 cut(s)	761, 1105, 1140, 1310, 1429
HpaII	CCGG	2 cut(s)	1144, 1435
HphI	GGTGA	4 cut(s)	772, 1051, 1249, 1424
Hpy166II	GTNNAC	1 cut(s)	1012
Hpy8I	GTNNAC	1 cut(s)	1012
HpyAV	CCTTC	3 cut(s)	650, 684, 1382
HpyCH4III	ACNGT	2 cut(s)	275, 1019
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	9 cut(s)	220, 445, 482, 500, 802, 899, 973, 1423, 1441
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 175, 451, 784, 934, 1250, 1477
HpySE526I	ACGT	1 cut(s)	369
HspAI	GCGC	1 cut(s)	1469
Kzo9I	GATC	4 cut(s)	286, 301, 337, 1549
LmnI	GCTCC	7 cut(s)	278, 364, 577, 848, 934, 963, 1195
LweI	GCATC	4 cut(s)	199, 207, 553, 1109
MaeI	CTAG	5 cut(s)	75, 299, 393, 810, 1542
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	3 cut(s)	617, 1171, 1221
MalI	GATC	4 cut(s)	288, 303, 339, 1551
MboI	GATC	4 cut(s)	286, 301, 337, 1549
MboII	GAAGA	5 cut(s)	44, 86, 486, 1114, 1259
MfeI	CAATTG	1 cut(s)	56
MhlI	GDGCHC	3 cut(s)	939, 960, 1516
MlsI	TGGCCA	2 cut(s)	545, 1064
MluCI	AATT	3 cut(s)	56, 201, 558
MluNI	TGGCCA	2 cut(s)	545, 1064
MlyI	GAGTC	2 cut(s)	770, 1099
MmeI	TCCRAC	2 cut(s)	258, 437
Mox20I	TGGCCA	2 cut(s)	545, 1064
Mph1103I	ATGCAT	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	490
MscI	TGGCCA	2 cut(s)	545, 1064
MseI	TTAA	2 cut(s)	774, 1161
MslI	CAYNNNNRTG	3 cut(s)	195, 1032, 1130
Msp20I	TGGCCA	2 cut(s)	545, 1064
MspA1I	CMGCKG	3 cut(s)	787, 968, 1112
MspI	CCGG	2 cut(s)	1144, 1435
MspR9I	CCNGG	2 cut(s)	718, 818
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	2 cut(s)	718, 818
MvnI	CGCG	1 cut(s)	1471
MwoI	GCNNNNNNNGC	7 cut(s)	124, 175, 451, 784, 934, 1250, 1477
NcoI	CCATGG	1 cut(s)	534
NdeI	CATATG	2 cut(s)	283, 745
NdeII	GATC	4 cut(s)	286, 301, 337, 1549
NlaIV	GGNNCC	1 cut(s)	630
NmeAIII	GCCGAG	1 cut(s)	1516
NmuCI	GTSAC	1 cut(s)	1171
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	4 cut(s)	449, 826, 1099, 1324
PaeI	GCATGC	1 cut(s)	1324
PagI	TCATGA	1 cut(s)	196
PasI	CCCWGGG	1 cut(s)	817
PceI	AGGCCT	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	3 cut(s)	1140, 1310, 1429
PleI	GAGTC	2 cut(s)	769, 1099
PpsI	GAGTC	2 cut(s)	769, 1099
Psp124BI	GAGCTC	2 cut(s)	960, 1516
Psp6I	CCWGG	2 cut(s)	716, 816
PspEI	GGTNACC	1 cut(s)	617
PspFI	CCCAGC	1 cut(s)	783
PspGI	CCWGG	2 cut(s)	716, 816
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	4 cut(s)	629, 659, 1146, 1534
PstI	CTGCAG	3 cut(s)	484, 901, 1425
PstNI	CAGNNNCTG	1 cut(s)	896
PvuII	CAGCTG	3 cut(s)	787, 968, 1112
RsaI	GTAC	2 cut(s)	478, 1496
RsaNI	GTAC	2 cut(s)	477, 1495
RseI	CAYNNNNRTG	3 cut(s)	195, 1032, 1130
SacI	GAGCTC	2 cut(s)	960, 1516
SaqAI	TTAA	2 cut(s)	774, 1161
Sau3AI	GATC	4 cut(s)	286, 301, 337, 1549
Sau96I	GGNCC	4 cut(s)	629, 659, 1146, 1534
ScaI	AGTACT	2 cut(s)	478, 1496
SchI	GAGTC	2 cut(s)	770, 1099
ScrFI	CCNGG	2 cut(s)	718, 818
SduI	GDGCHC	3 cut(s)	939, 960, 1516
SfaNI	GCATC	4 cut(s)	199, 207, 553, 1109
SfcI	CTRYAG	3 cut(s)	480, 897, 1421
SinI	GGWCC	2 cut(s)	629, 659
SmiMI	CAYNNNNRTG	3 cut(s)	195, 1032, 1130
SmlI	CTYRAG	2 cut(s)	929, 1049
SmoI	CTYRAG	2 cut(s)	929, 1049
SphI	GCATGC	1 cut(s)	1324
Sse9I	AATT	3 cut(s)	56, 201, 558
SseBI	AGGCCT	1 cut(s)	409
SsiI	CCGC	4 cut(s)	116, 622, 943, 1471
SspMI	CTAG	5 cut(s)	75, 299, 393, 810, 1542
SstI	GAGCTC	2 cut(s)	960, 1516
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	2 cut(s)	716, 816
StyI	CCWWGG	2 cut(s)	534, 1261
TaaI	ACNGT	2 cut(s)	275, 1019
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	4 cut(s)	11, 764, 906, 1182
TasI	AATT	3 cut(s)	56, 201, 558
TatI	WGTACW	2 cut(s)	476, 1494
TfiI	GAWTC	3 cut(s)	1140, 1310, 1429
Tru1I	TTAA	2 cut(s)	774, 1161
Tru9I	TTAA	2 cut(s)	774, 1161
TscAI	CASTG	4 cut(s)	280, 690, 1194, 1320
TseFI	GTSAC	1 cut(s)	1171
Tsp45I	GTSAC	1 cut(s)	1171
TspDTI	ATGAA	6 cut(s)	70, 213, 244, 1058, 1114, 1382
TspGWI	ACGGA	2 cut(s)	225, 1208
TspRI	CASTG	4 cut(s)	280, 690, 1194, 1320
VpaK11BI	GGWCC	2 cut(s)	629, 659
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	4 cut(s)	449, 826, 1099, 1324
XmnI	GAANNNNTTC	1 cut(s)	490
XspI	CTAG	5 cut(s)	75, 299, 393, 810, 1542
ZrmI	AGTACT	2 cut(s)	478, 1496
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.