Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009463

Physical Location & Seq

Genomic Coordinates Reverse (-)

24518424 .. 24521581

Gene Structure 3158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023490

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTTCCAGTCTTCAAGGAAATCAACTCAACCAACGACAACAACAAGAAGAGCATCATCATCATCATCATCAAATACAAAACCATCATCATCATCAGCAGCAGCAGCAGCAACAGCAACAACAACAGCATCATCATGAAATTCAATACGGAATGATGCAGTCATCATCCTCCAACATCCCATCTGGGAACTTCATAGGAAGCAGCAAAGACAGTGGAGCATATGATCTGGGCGAGCTAGATCAAGCCCTTTTCCTCTACCTTGATGGACAACAAGATCATCATCATCATCATCAAGCTCCTCATCACGTTCAAGACCAACGACATCAAACTAGCTCAGGAATGAGGCCTCCAACTTTGAACATCTTTCCATCTGAGCCTATGCATGTAGAGCCATCATCAACCAAAGGTGTTAGTACTGCAGGAATAGTTTCTTCTGCAACGAGTGGTTCAAAGAGACCATCAGAGCCGTCCATGGAGTTGGCCAACCCACGCAAAATTGATGCTGCTGCTTCATCTGGACTTCCTGAACCTGCCAAGACTATCAAGCGTGAGGGTAACCGCAAGGGACCAACTACATCAAGTTCAGAGCAAGAAGGACCAAAAACACCAGACCCTAAGACACTGAGAAGGCTTGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTCAGAAAAAAGGCATATGTTCAGCAGTTAGAGTCGAGTAGGATTAAGCTCACCCAGCTGGAACAAGAGCTGCAAAGAGCTAGAACCCAGGGCATGTTCTTTGGAGGTGGTCTTGTAGGAGCAGAACAAGGTGTTCCAGTTGGTATAAACAACATTAGCTCAGACGCTGCTGTTTTCGACATGGAGTATGCTCGTTGGCTTGAGGAGCACCACCGCCTGATGTGTGAGCTCCGAGCAGCTGTGCAAGAGCATTTGCCCGAGAATGAGCTGAGGCTGTTTGTGGACAACTGTTTGGCACACTATGATGAGGTGATGAACCTCAAGAGCATGGTGGCCAAAACCGATGTGTTTCACATTGTTTCAGGCATGTGGAAGACTCCAGCTGAAAGATGCTTCATGTGGATGGGTGGATTCCGGCCCTCTGAGGTCATTAAGGTAATTGCATATATGCTTATGCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

378

Amino Acids

42.6

Weight (kDa)

6.98

Isoelectric Point (pI)

62.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	204 - 248	1.4e-07	Basic region leucine zipper
bZIP_1	PF00170	207 - 247	2.4e-08	bZIP transcription factor
DOG1	PF14144	297 - 370	1.8e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06839 AT5G06839 AT5G06839
fragaria_vesca	FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750
malus_domestica	MD12G1061900.v1.1 MD14G1062300.v1.1
prunus_persica	Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1
pyrus_communis	pycom12g05460 pycom14g04990
rosa_chinensis	RchiOBHm_Chr3g0480361
rosa_laevigata	RLG00000023490
rosa_roxburghii	Rroxscaffold_6G00401490
rosa_rugosa	Rorug03G0183200
rosa_samantha	Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400
rosa_wichuraiana	Rw3G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	541
AciI	CCGC	2 cut(s)	562, 883
AcoI	YGGCCR	2 cut(s)	483, 1002
AcsI	RAATTY	1 cut(s)	141
AfaI	GTAC	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	17, 146, 314, 361, 453
AjnI	CCWGG	2 cut(s)	656, 756
Alw21I	GWGCWC	2 cut(s)	879, 900
Alw26I	GTCTC	1 cut(s)	451
AlwNI	CAGNNNCTG	1 cut(s)	836
Ama87I	CYCGRG	1 cut(s)	926
AoxI	GGCC	4 cut(s)	347, 483, 1002, 1085
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	1 cut(s)	430
AspS9I	GGNCC	3 cut(s)	569, 599, 1086
AsuHPI	GGTGA	2 cut(s)	712, 991
AvaI	CYCGRG	1 cut(s)	926
AvaII	GGWCC	2 cut(s)	569, 599
BalI	TGGCCA	2 cut(s)	485, 1004
BanII	GRGCYC	1 cut(s)	900
BbsI	GAAGAC	2 cut(s)	5, 1049
Bbv12I	GWGCWC	2 cut(s)	879, 900
BbvCI	CCTCAGC	1 cut(s)	938
BccI	CCATC	7 cut(s)	93, 190, 260, 379, 403, 469, 1066
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	2 cut(s)	658, 758
BcoDI	GTCTC	1 cut(s)	451
BfaI	CTAG	3 cut(s)	239, 333, 750
BfmI	CTRYAG	1 cut(s)	420
BfuAI	ACCTGC	1 cut(s)	541
BmcAI	AGTACT	1 cut(s)	418
Bme1390I	CCNGG	2 cut(s)	658, 758
Bme18I	GGWCC	2 cut(s)	569, 599
BmeT110I	CYCGRG	1 cut(s)	926
BmgT120I	GGNCC	3 cut(s)	569, 599, 1086
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	2 cut(s)	658, 758
BmsI	GCATC	5 cut(s)	64, 139, 147, 493, 1049
BpiI	GAAGAC	2 cut(s)	5, 1049
BpmI	CTGGAG	1 cut(s)	1032
Bpu10I	CCTNAGC	2 cut(s)	337, 938
BpuEI	CTTGAG	2 cut(s)	890, 974
BsaBI	GATNNNNATC	1 cut(s)	282
BsaI	GGTCTC	1 cut(s)	451
BsaJI	CCNNGG	3 cut(s)	474, 756, 757
Bse1I	ACTGG	2 cut(s)	9, 806
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	2 cut(s)	658, 758
BseDI	CCNNGG	3 cut(s)	474, 756, 757
BseGI	GGATG	3 cut(s)	167, 177, 1077
BseJI	GATNNNNATC	1 cut(s)	282
BseMII	CTCAG	8 cut(s)	351, 366, 617, 653, 685, 843, 929, 1083
BseNI	ACTGG	2 cut(s)	9, 806
BseRI	GAGGAG	2 cut(s)	291, 887
BseYI	CCCAGC	1 cut(s)	723
BshFI	GGCC	4 cut(s)	349, 485, 1004, 1087
BsiHKAI	GWGCWC	2 cut(s)	879, 900
BsiHKCI	CYCGRG	1 cut(s)	926
BsiSI	CCGG	1 cut(s)	1084
BslFI	GGGAC	1 cut(s)	582
BsmAI	GTCTC	1 cut(s)	451
BsmFI	GGGAC	1 cut(s)	582
BsnI	GGCC	4 cut(s)	349, 485, 1004, 1087
Bso31I	GGTCTC	1 cut(s)	451
BsoBI	CYCGRG	1 cut(s)	926
Bsp1286I	GDGCHC	2 cut(s)	879, 900
Bsp143I	GATC	3 cut(s)	226, 241, 277
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	2 cut(s)	562, 883
BspANI	GGCC	4 cut(s)	349, 485, 1004, 1087
BspCNI	CTCAG	8 cut(s)	350, 367, 618, 652, 684, 842, 930, 1084
BspHI	TCATGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	570
BspMAI	CTGCAG	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	541
BspQI	GCTCTTC	1 cut(s)	45
BspTNI	GGTCTC	1 cut(s)	451
BsrI	ACTGG	2 cut(s)	9, 806
BssECI	CCNNGG	3 cut(s)	474, 756, 757
BssMI	GATC	3 cut(s)	226, 241, 277
BssT1I	CCWWGG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	658, 758
Bst4CI	ACNGT	2 cut(s)	215, 959
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	3 cut(s)	236, 636, 668
BstDEI	CTNAG	9 cut(s)	337, 375, 618, 626, 639, 671, 829, 938, 1092
BstDSI	CCRYGG	1 cut(s)	474
BstEII	GGTNACC	1 cut(s)	557
BstF5I	GGATG	3 cut(s)	167, 177, 1077
BstKTI	GATC	3 cut(s)	229, 244, 280
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	3 cut(s)	226, 241, 277
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 109, 115, 391, 724, 874
BstNI	CCWGG	2 cut(s)	658, 758
BstNSI	RCATGY	3 cut(s)	389, 766, 1039
BstPI	GGTNACC	1 cut(s)	557
BstSCI	CCNGG	2 cut(s)	656, 756
BstSFI	CTRYAG	1 cut(s)	420
BstV2I	GAAGAC	2 cut(s)	5, 1049
BstXI	CCANNNNNNTGG	1 cut(s)	481
BsuRI	GGCC	4 cut(s)	349, 485, 1004, 1087
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	3 cut(s)	167, 177, 1077
BtsIMutI	CAGTG	2 cut(s)	220, 623
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	3 cut(s)	236, 636, 668
CaiI	CAGNNNCTG	1 cut(s)	836
CciI	TCATGA	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	569, 599, 1086
CseI	GACGC	1 cut(s)	842
Csp6I	GTAC	1 cut(s)	417
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	8 cut(s)	137, 386, 475, 763, 850, 997, 1036, 1066
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	9 cut(s)	337, 375, 618, 626, 639, 671, 829, 938, 1092
DpnI	GATC	3 cut(s)	228, 243, 279
DpnII	GATC	3 cut(s)	226, 241, 277
EaeI	YGGCCR	2 cut(s)	483, 1002
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	898
Eco130I	CCWWGG	1 cut(s)	474
Eco147I	AGGCCT	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	900
Eco31I	GGTCTC	1 cut(s)	451
Eco47I	GGWCC	2 cut(s)	569, 599
Eco53kI	GAGCTC	1 cut(s)	898
Eco88I	CYCGRG	1 cut(s)	926
Eco91I	GGTNACC	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	898
EcoO65I	GGTNACC	1 cut(s)	557
EcoRII	CCWGG	2 cut(s)	656, 756
EcoT14I	CCWWGG	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	900
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	8 cut(s)	140, 389, 478, 766, 853, 1000, 1039, 1069
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	8 cut(s)	136, 385, 474, 762, 849, 996, 1035, 1065
FauNDI	CATATG	2 cut(s)	223, 685
FokI	GGATG	3 cut(s)	154, 164, 1084
FriOI	GRGCYC	1 cut(s)	900
FspBI	CTAG	3 cut(s)	239, 333, 750
GsaI	CCCAGC	1 cut(s)	727
GsuI	CTGGAG	1 cut(s)	1032
HaeIII	GGCC	4 cut(s)	349, 485, 1004, 1087
HapII	CCGG	1 cut(s)	1084
HgaI	GACGC	1 cut(s)	842
Hin1II	CATG	8 cut(s)	140, 389, 478, 766, 853, 1000, 1039, 1069
HinfI	GANTC	3 cut(s)	701, 1045, 1080
HpaII	CCGG	1 cut(s)	1084
HphI	GGTGA	2 cut(s)	712, 991
Hpy166II	GTNNAC	1 cut(s)	952
Hpy188I	TCNGA	8 cut(s)	376, 466, 589, 642, 674, 832, 902, 1093
Hpy188III	TCNNGA	6 cut(s)	137, 314, 339, 519, 527, 991
Hpy8I	GTNNAC	1 cut(s)	952
HpyAV	CCTTC	2 cut(s)	590, 624
HpyCH4III	ACNGT	2 cut(s)	215, 959
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	7 cut(s)	160, 385, 422, 440, 742, 913, 1112
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 109, 115, 391, 724, 874
HpyF3I	CTNAG	9 cut(s)	337, 375, 618, 626, 639, 671, 829, 938, 1092
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	8 cut(s)	140, 389, 478, 766, 853, 1000, 1039, 1069
Kzo9I	GATC	3 cut(s)	226, 241, 277
LguI	GCTCTTC	1 cut(s)	45
LmnI	GCTCC	5 cut(s)	218, 304, 788, 874, 903
LweI	GCATC	5 cut(s)	64, 139, 147, 493, 1049
MaeI	CTAG	3 cut(s)	239, 333, 750
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	3 cut(s)	228, 243, 279
MboI	GATC	3 cut(s)	226, 241, 277
MboII	GAAGA	4 cut(s)	5, 62, 426, 1054
MhlI	GDGCHC	2 cut(s)	879, 900
MlsI	TGGCCA	2 cut(s)	485, 1004
MluCI	AATT	3 cut(s)	141, 498, 1107
MluNI	TGGCCA	2 cut(s)	485, 1004
MlyI	GAGTC	2 cut(s)	710, 1039
MmeI	TCCRAC	2 cut(s)	198, 377
Mox20I	TGGCCA	2 cut(s)	485, 1004
Mph1103I	ATGCAT	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	430
MscI	TGGCCA	2 cut(s)	485, 1004
MseI	TTAA	3 cut(s)	714, 1101, 1132
MslI	CAYNNNNRTG	3 cut(s)	135, 972, 1070
Msp20I	TGGCCA	2 cut(s)	485, 1004
MspA1I	CMGCKG	3 cut(s)	727, 908, 1052
MspI	CCGG	1 cut(s)	1084
MspR9I	CCNGG	2 cut(s)	658, 758
MvaI	CCWGG	2 cut(s)	658, 758
MwoI	GCNNNNNNNGC	6 cut(s)	106, 109, 115, 391, 724, 874
NcoI	CCATGG	1 cut(s)	474
NdeI	CATATG	2 cut(s)	223, 685
NdeII	GATC	3 cut(s)	226, 241, 277
NlaIII	CATG	8 cut(s)	140, 389, 478, 766, 853, 1000, 1039, 1069
NlaIV	GGNNCC	1 cut(s)	570
NsiI	ATGCAT	1 cut(s)	387
NspI	RCATGY	3 cut(s)	389, 766, 1039
PagI	TCATGA	1 cut(s)	136
PasI	CCCWGGG	1 cut(s)	757
PceI	AGGCCT	1 cut(s)	349
PciSI	GCTCTTC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	1080
PleI	GAGTC	2 cut(s)	709, 1039
PpsI	GAGTC	2 cut(s)	709, 1039
Psp124BI	GAGCTC	1 cut(s)	900
Psp6I	CCWGG	2 cut(s)	656, 756
PspEI	GGTNACC	1 cut(s)	557
PspFI	CCCAGC	1 cut(s)	723
PspGI	CCWGG	2 cut(s)	656, 756
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	3 cut(s)	569, 599, 1086
PstI	CTGCAG	1 cut(s)	424
PstNI	CAGNNNCTG	1 cut(s)	836
PvuII	CAGCTG	3 cut(s)	727, 908, 1052
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
RseI	CAYNNNNRTG	3 cut(s)	135, 972, 1070
SacI	GAGCTC	1 cut(s)	900
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	3 cut(s)	714, 1101, 1132
Sau3AI	GATC	3 cut(s)	226, 241, 277
Sau96I	GGNCC	3 cut(s)	569, 599, 1086
ScaI	AGTACT	1 cut(s)	418
SchI	GAGTC	2 cut(s)	710, 1039
ScrFI	CCNGG	2 cut(s)	658, 758
SduI	GDGCHC	2 cut(s)	879, 900
SfaNI	GCATC	5 cut(s)	64, 139, 147, 493, 1049
SfcI	CTRYAG	1 cut(s)	420
SinI	GGWCC	2 cut(s)	569, 599
SmiMI	CAYNNNNRTG	3 cut(s)	135, 972, 1070
SmlI	CTYRAG	2 cut(s)	869, 989
SmoI	CTYRAG	2 cut(s)	869, 989
Sse9I	AATT	3 cut(s)	141, 498, 1107
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	2 cut(s)	562, 883
SspMI	CTAG	3 cut(s)	239, 333, 750
SstI	GAGCTC	1 cut(s)	900
StuI	AGGCCT	1 cut(s)	349
StyD4I	CCNGG	2 cut(s)	656, 756
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	215, 959
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	704, 846
TasI	AATT	3 cut(s)	141, 498, 1107
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	1080
Tru1I	TTAA	3 cut(s)	714, 1101, 1132
Tru9I	TTAA	3 cut(s)	714, 1101, 1132
TscAI	CASTG	2 cut(s)	220, 630
TspDTI	ATGAA	5 cut(s)	153, 184, 504, 998, 1054
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	2 cut(s)	220, 630
VpaK11BI	GGWCC	2 cut(s)	569, 599
XapI	RAATTY	1 cut(s)	141
XceI	RCATGY	3 cut(s)	389, 766, 1039
XmnI	GAANNNNTTC	1 cut(s)	430
XspI	CTAG	3 cut(s)	239, 333, 750
ZrmI	AGTACT	1 cut(s)	418
Zsp2I	ATGCAT	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.