Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0009463

Physical Location & Seq

Genomic Coordinates Forward (+)

4816095 .. 4820229

Gene Structure 4135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04990.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGGTTTTCAAGAGGTTTTGATTTTGGAGGAGGCGGAGGACAAGAAGAGGAAAATAAAAGAGATCACCTACTCTTAGAAACAAAGCTCTTAGCTTCTTCTGCAAGACCAACTTCTACATCTTCTTCTTTTCTCATGGCTTCAAGTATTCAAGGAAACAGCAATCAACTTGAACACCAACAACAACATCATCATCAAATACAAGATCAGCATCATCAGCATCATCAGCAGCAACAGCAGCAGATTCAATATGGGATGATGCAATCATCATCTGCCAATATTCCCGCTGGGAACTTCATATCAAACAAAGACGGTGGAGCTGCTTATGATTTGGGGGAATCTCAGTGGATCGATCAAGCTCTTTTTCTCTACCTTGATGGACAGTCGCAGGACCATCACAACCCTTCAGCTAATCATGTTCACCATCAAGACCAACGATATCTTCATCAAAATAATTCGTCATCTGGAATGAGGCCTCCAACTTTGAATATTTTCCCATCTCAGCCGATGCATGTAGAGCCATCATCATCAACCAAAGCAGCTGGAACGGGATTAGTTTCTCCTTCAAGTAGTGGTTCAAAGAGACCATCAGAACCGTCCATGGAGTTGGCCAACCCACGCAATGATTCTACTGCCCCTCCTCCTCCTCCTTCTGGACCTTCTCATGAACCTGCCAAAGCTATCAAGCGTGAGGGTAACCGAAAGGGACCAACTACATCAAGTTCAGAGCAAGAAGGACCCAAAACACCGGACCCTAAGACTTTGAGAAGGCTTGCTCAGAATAGAGAAGCAGCCAGGAAAAGCAGGCTTAGAAAAAAGGGCATGTTCTTTGGAGGAGGACTTGTAGGAGGAGAGCAACAAAGCTTTCCTGTTGGTATCAACAACATTAGCCCAGACGCTGCCGTTTTTGACATGGAGTATGCAAGGTGGCTGGAGGAGCACCACCGTCTCATGTGCGAGCTTCGAGCTGCAGTACAAGAGCATTTGCCGGAGAATGAGCTGCGACTTTATGTGGACAACTGCTTGGCACATTATGATGAAGTGTTGAACCTCAAAGGCATGGTTGCCAAGACTGATGTATTTCACATTGTTTCTGGTATGTGGAAGACTCCGGCTGAACGTTGCTTCATGTGGATGGGTGGATTTCGGCCCTCTGAGGTCATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

390

Amino Acids

43.15

Weight (kDa)

6.74

Isoelectric Point (pI)

68.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06839 AT5G06839 AT5G06839
fragaria_vesca	FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750
malus_domestica	MD12G1061900.v1.1 MD14G1062300.v1.1
prunus_persica	Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1
pyrus_communis	pycom12g05460 pycom14g04990
rosa_chinensis	RchiOBHm_Chr3g0480361
rosa_laevigata	RLG00000023490
rosa_roxburghii	Rroxscaffold_6G00401490
rosa_rugosa	Rorug03G0183200
rosa_samantha	Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400
rosa_wichuraiana	Rw3G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	679
AciI	CCGC	2 cut(s)	36, 285
AclI	AACGTT	1 cut(s)	1120
AclWI	GGATC	1 cut(s)	356
AcoI	YGGCCR	1 cut(s)	609
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	1 cut(s)	975
AfiI	CCNNNNNNNGG	1 cut(s)	653
AgsI	TTSAA	9 cut(s)	12, 144, 152, 173, 248, 487, 567, 579, 1048
AjnI	CCWGG	1 cut(s)	794
AjuI	GAANNNNNNNTTGG	2 cut(s)	426, 458
Alw21I	GWGCWC	1 cut(s)	942
Alw26I	GTCTC	2 cut(s)	577, 953
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	1 cut(s)	899
AoxI	GGCC	3 cut(s)	473, 609, 1148
ApeKI	GCWGC	8 cut(s)	229, 238, 320, 539, 791, 899, 968, 1000
Asp700I	GAANNNNTTC	1 cut(s)	491
AspS9I	GGNCC	6 cut(s)	391, 656, 707, 737, 751, 1149
AsuHPI	GGTGA	2 cut(s)	59, 413
AvaII	GGWCC	5 cut(s)	391, 656, 707, 737, 751
BalI	TGGCCA	1 cut(s)	611
BbsI	GAAGAC	1 cut(s)	1112
Bbv12I	GWGCWC	1 cut(s)	942
BbvI	GCAGC	8 cut(s)	241, 250, 307, 551, 803, 886, 955, 987
BccI	CCATC	7 cut(s)	371, 402, 432, 505, 529, 595, 1129
BceAI	ACGGC	1 cut(s)	887
BciT130I	CCWGG	1 cut(s)	796
BcoDI	GTCTC	2 cut(s)	577, 953
BfmI	CTRYAG	1 cut(s)	969
BfuAI	ACCTGC	1 cut(s)	679
BisI	GCNGC	8 cut(s)	230, 239, 321, 540, 792, 900, 969, 1001
BlsI	GCNGC	8 cut(s)	231, 240, 322, 541, 793, 901, 970, 1002
Bme1390I	CCNGG	1 cut(s)	796
Bme18I	GGWCC	5 cut(s)	391, 656, 707, 737, 751
BmgT120I	GGNCC	6 cut(s)	391, 656, 707, 737, 751, 1149
BmiI	GGNNCC	3 cut(s)	708, 739, 753
BmrFI	CCNGG	1 cut(s)	796
BmsI	GCATC	4 cut(s)	220, 229, 249, 498
BpiI	GAAGAC	1 cut(s)	1112
BpmI	CTGGAG	1 cut(s)	953
Bsa29I	ATCGAT	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	1 cut(s)	600
BsaWI	WCCGGW	1 cut(s)	748
BsaXI	ACNNNNNCTCC	4 cut(s)	622, 652, 828, 858
Bsc4I	CCNNNNNNNGG	1 cut(s)	653
Bse3DI	GCAATG	1 cut(s)	628
Bse8I	GATNNNNATC	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	796
BseCI	ATCGAT	1 cut(s)	351
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	2 cut(s)	261, 1140
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	653
BseMI	GCAATG	1 cut(s)	628
BseMII	CTCAG	4 cut(s)	356, 515, 791, 1146
BseRI	GAGGAG	7 cut(s)	45, 630, 633, 636, 849, 864, 950
BseXI	GCAGC	8 cut(s)	241, 250, 307, 551, 803, 886, 955, 987
BseYI	CCCAGC	1 cut(s)	287
BshFI	GGCC	3 cut(s)	475, 611, 1150
BshVI	ATCGAT	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	942
BsiSI	CCGG	3 cut(s)	749, 989, 1112
BslFI	GGGAC	1 cut(s)	720
BslI	CCNNNNNNNGG	1 cut(s)	653
BsmAI	GTCTC	2 cut(s)	577, 953
BsmBI	CGTCTC	1 cut(s)	953
BsmFI	GGGAC	1 cut(s)	720
BsnI	GGCC	3 cut(s)	475, 611, 1150
Bso31I	GGTCTC	1 cut(s)	577
Bsp1286I	GDGCHC	1 cut(s)	942
Bsp143I	GATC	4 cut(s)	64, 205, 348, 352
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	2 cut(s)	36, 285
BspANI	GGCC	3 cut(s)	475, 611, 1150
BspCNI	CTCAG	4 cut(s)	355, 514, 790, 1147
BspDI	ATCGAT	1 cut(s)	351
BspHI	TCATGA	1 cut(s)	664
BspLI	GGNNCC	3 cut(s)	708, 739, 753
BspMAI	CTGCAG	1 cut(s)	973
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	628
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	4 cut(s)	64, 205, 348, 352
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	796
Bst4CI	ACNGT	4 cut(s)	314, 384, 597, 947
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	3 cut(s)	774, 806, 959
BstDEI	CTNAG	8 cut(s)	76, 91, 342, 501, 756, 777, 809, 1155
BstDSI	CCRYGG	1 cut(s)	600
BstEII	GGTNACC	1 cut(s)	695
BstF5I	GGATG	2 cut(s)	261, 1140
BstKTI	GATC	4 cut(s)	67, 208, 351, 355
BstMAI	GTCTC	2 cut(s)	577, 953
BstMBI	GATC	4 cut(s)	64, 205, 348, 352
BstMWI	GCNNNNNNNGC	7 cut(s)	101, 217, 226, 235, 238, 517, 937
BstNI	CCWGG	1 cut(s)	796
BstNSI	RCATGY	2 cut(s)	515, 826
BstPI	GGTNACC	1 cut(s)	695
BstSCI	CCNGG	1 cut(s)	794
BstSFI	CTRYAG	1 cut(s)	969
BstV1I	GCAGC	8 cut(s)	241, 250, 307, 551, 803, 886, 955, 987
BstV2I	GAAGAC	1 cut(s)	1112
BstXI	CCANNNNNNTGG	1 cut(s)	607
Bsu15I	ATCGAT	1 cut(s)	351
BsuRI	GGCC	3 cut(s)	475, 611, 1150
BsuTUI	ATCGAT	1 cut(s)	351
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	2 cut(s)	261, 1140
BtsIMutI	CAGTG	1 cut(s)	350
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	3 cut(s)	774, 806, 959
CaiI	CAGNNNCTG	1 cut(s)	899
CciI	TCATGA	1 cut(s)	664
Cfr13I	GGNCC	6 cut(s)	391, 656, 707, 737, 751, 1149
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	905
Csp6I	GTAC	1 cut(s)	974
CspCI	CAANNNNNGTGG	2 cut(s)	295, 330
CviQI	GTAC	1 cut(s)	974
DdeI	CTNAG	8 cut(s)	76, 91, 342, 501, 756, 777, 809, 1155
DpnI	GATC	4 cut(s)	66, 207, 350, 354
DpnII	GATC	4 cut(s)	64, 205, 348, 352
EaeI	YGGCCR	1 cut(s)	609
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EciI	GGCGGA	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	600
Eco147I	AGGCCT	1 cut(s)	475
Eco31I	GGTCTC	1 cut(s)	577
Eco32I	GATATC	1 cut(s)	440
Eco47I	GGWCC	5 cut(s)	391, 656, 707, 737, 751
Eco57I	CTGAAG	1 cut(s)	390
Eco91I	GGTNACC	1 cut(s)	695
EcoO109I	RGGNCCY	1 cut(s)	737
EcoO65I	GGTNACC	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	794
EcoRV	GATATC	1 cut(s)	440
EcoT14I	CCWWGG	1 cut(s)	600
EcoT22I	ATGCAT	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	600
Esp3I	CGTCTC	1 cut(s)	953
FalI	AAGNNNNNCTT	2 cut(s)	97, 129
FaqI	GGGAC	1 cut(s)	720
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	8 cut(s)	230, 239, 321, 540, 792, 900, 969, 1001
FokI	GGATG	2 cut(s)	268, 1147
Fsp4HI	GCNGC	8 cut(s)	230, 239, 321, 540, 792, 900, 969, 1001
GluI	GCNGC	8 cut(s)	230, 239, 321, 540, 792, 900, 969, 1001
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	953
HaeIII	GGCC	3 cut(s)	475, 611, 1150
HapII	CCGG	3 cut(s)	749, 989, 1112
HgaI	GACGC	1 cut(s)	905
HindIII	AAGCTT	1 cut(s)	862
HinfI	GANTC	4 cut(s)	244, 338, 626, 1108
HpaII	CCGG	3 cut(s)	749, 989, 1112
HphI	GGTGA	2 cut(s)	59, 413
Hpy166II	GTNNAC	2 cut(s)	421, 1015
Hpy188I	TCNGA	4 cut(s)	592, 727, 780, 1156
Hpy188III	TCNNGA	5 cut(s)	12, 428, 465, 654, 665
Hpy8I	GTNNAC	2 cut(s)	421, 1015
HpyAV	CCTTC	6 cut(s)	414, 573, 660, 669, 728, 762
HpyCH4III	ACNGT	4 cut(s)	314, 384, 597, 947
HpyCH4IV	ACGT	1 cut(s)	1120
HpyCH4V	TGCA	5 cut(s)	104, 262, 511, 923, 971
HpyF10VI	GCNNNNNNNGC	7 cut(s)	101, 217, 226, 235, 238, 517, 937
HpyF3I	CTNAG	8 cut(s)	76, 91, 342, 501, 756, 777, 809, 1155
HpySE526I	ACGT	1 cut(s)	1120
Kzo9I	GATC	4 cut(s)	64, 205, 348, 352
LmnI	GCTCC	2 cut(s)	317, 937
Lsp1109I	GCAGC	8 cut(s)	241, 250, 307, 551, 803, 886, 955, 987
LweI	GCATC	4 cut(s)	220, 229, 249, 498
MaeII	ACGT	1 cut(s)	1120
MaeIII	GTNAC	1 cut(s)	695
MalI	GATC	4 cut(s)	66, 207, 350, 354
MboI	GATC	4 cut(s)	64, 205, 348, 352
MboII	GAAGA	6 cut(s)	59, 90, 114, 117, 434, 1117
MhlI	GDGCHC	1 cut(s)	942
MlsI	TGGCCA	1 cut(s)	611
MluCI	AATT	1 cut(s)	454
MluNI	TGGCCA	1 cut(s)	611
MlyI	GAGTC	1 cut(s)	1102
MmeI	TCCRAC	1 cut(s)	503
Mox20I	TGGCCA	1 cut(s)	611
Mph1103I	ATGCAT	1 cut(s)	513
MroXI	GAANNNNTTC	1 cut(s)	491
MscI	TGGCCA	1 cut(s)	611
MslI	CAYNNNNRTG	2 cut(s)	1035, 1133
Msp20I	TGGCCA	1 cut(s)	611
MspA1I	CMGCKG	2 cut(s)	287, 542
MspI	CCGG	3 cut(s)	749, 989, 1112
MspR9I	CCNGG	1 cut(s)	796
MvaI	CCWGG	1 cut(s)	796
MwoI	GCNNNNNNNGC	7 cut(s)	101, 217, 226, 235, 238, 517, 937
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	4 cut(s)	64, 205, 348, 352
NlaIV	GGNNCC	3 cut(s)	708, 739, 753
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	2 cut(s)	515, 826
PagI	TCATGA	1 cut(s)	664
PceI	AGGCCT	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	3 cut(s)	244, 338, 626
PkrI	GCNGC	8 cut(s)	231, 240, 322, 541, 793, 901, 970, 1002
PleI	GAGTC	1 cut(s)	1102
PpsI	GAGTC	1 cut(s)	1102
PpuMI	RGGWCCY	1 cut(s)	737
Psp1406I	AACGTT	1 cut(s)	1120
Psp5II	RGGWCCY	1 cut(s)	737
Psp6I	CCWGG	1 cut(s)	794
PspEI	GGTNACC	1 cut(s)	695
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	794
PspN4I	GGNNCC	3 cut(s)	708, 739, 753
PspPI	GGNCC	6 cut(s)	391, 656, 707, 737, 751, 1149
PspPPI	RGGWCCY	1 cut(s)	737
PstI	CTGCAG	1 cut(s)	973
PstNI	CAGNNNCTG	1 cut(s)	899
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	1 cut(s)	975
RsaNI	GTAC	1 cut(s)	974
RseI	CAYNNNNRTG	2 cut(s)	1035, 1133
SatI	GCNGC	8 cut(s)	230, 239, 321, 540, 792, 900, 969, 1001
Sau3AI	GATC	4 cut(s)	64, 205, 348, 352
Sau96I	GGNCC	6 cut(s)	391, 656, 707, 737, 751, 1149
SchI	GAGTC	1 cut(s)	1102
ScrFI	CCNGG	1 cut(s)	796
SduI	GDGCHC	1 cut(s)	942
SfaNI	GCATC	4 cut(s)	220, 229, 249, 498
SfcI	CTRYAG	1 cut(s)	969
SinI	GGWCC	5 cut(s)	391, 656, 707, 737, 751
SmiMI	CAYNNNNRTG	2 cut(s)	1035, 1133
Sse9I	AATT	1 cut(s)	454
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	2 cut(s)	36, 285
SspI	AATATT	2 cut(s)	280, 490
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	794
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	4 cut(s)	314, 384, 597, 947
TaiI	ACGT	1 cut(s)	1123
TaqI	TCGA	2 cut(s)	351, 964
TasI	AATT	1 cut(s)	454
TatI	WGTACW	1 cut(s)	973
TfiI	GAWTC	3 cut(s)	244, 338, 626
TscAI	CASTG	1 cut(s)	350
TseI	GCWGC	8 cut(s)	229, 238, 320, 539, 791, 899, 968, 1000
TspDTI	ATGAA	5 cut(s)	286, 434, 681, 1053, 1117
TspRI	CASTG	1 cut(s)	350
VpaK11BI	GGWCC	5 cut(s)	391, 656, 707, 737, 751
XceI	RCATGY	2 cut(s)	515, 826
XmnI	GAANNNNTTC	1 cut(s)	491
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.