Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009463

Physical Location & Seq

Genomic Coordinates Forward (+)

25240819 .. 25246649

Gene Structure 5831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G021070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGGGGTTTTCGAGAGCTTTTGAGGAGGCAGAAGAAAGAGCAGGAGAGCAACCTCAATTGGAAACAAAGCTCGCTAGTTTCATGGCTTCCAGTCTTCAAGGAAATCAACTCAACCCGCAACAACAGCAACCACAACAACAACAACAAGAGCATCATCATCATCATCATCAAATACAAAACCATCATCAACATCAGCAGCAACAGCAACAACAACAGCATCATCATGAAATTCAATACGGAATGATGCAGTCATCATCCTCCAACATCCCATCTGGGAACTTCATGGGAAGCAGCAAAGACAGTGGAGCATATGATCTGGGCGAGCTAGATCAAGCCCTTTTCCTCTACCTTGATGGACAACAAGATCATCATCATCATCATCAAGCTCCTCATCACGTTCAAGACCAACGACTATTATGTACTGCAGATCAAACTAGCTCAGGAATGAGGCCTCCAACTTTGAACATCTTTCCATCTGAGCCTATGCATGTAGAGCCATCATCAACCAAAGGTGTTAGTACTGCAGGAATAGTTTCTTCTGCAACGAGTGGTTCAAAGAGACCATCAGAGCCGTCCATGGAGTTGGCCAACCCACGCAAAATTGATGCTGCTGCTCCATCTGGACTTCCTGAACCTGCCAAGAGTATCAAGCGTGAGGGTAACCGCAAGGGACCAACTACATCAAGTTCAGAGCAGGAAGGACCAAAAACACCAGACCCTAAGACACTGAGAAGGCTTGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTCAGAAAAAAGGCATATGTTCAGCAGTTAGAGTCGAGTAGGATTAAGCTCACCCAGCTGGAACAAGAGCTGCAAAGAGCTAGAACCCAGGGCATGTTCTTTGGAGGTGGTCTTGTAGGAGCAGAACAAGGTGTTCCAGTTGGTATAAACAACATTAGCTCAGACGCTGCAGTTTTCGACATGGAGTATGCTCGTTGGCTTGAGGAGCACCACCGCCTGATGTGTGAGCTCCGAGCAGCTGTGCAAGAACATTTGCCAGAGAATGAGCTGAGGCTGTTTGTGGACAACTGTTTGGCACACTATGATGAGGTGATGAACCTCAAGAGCATGGTGGCCAAAACCGATGTGTTTCACATTGTTTCAGGCATGTGGAAGACTCCAGCTGAAAGATGCTTCATGTGGATGGGTGGATTCCGGCCCTCTGAGGTCATTAAGATTATTGTGACCCAAATCGAGCCACTGACGGAGCAGCAACTAATGGCTATTTGTTCGTTACAACAATCCACAAGTGAAGCTGAAGACGCTCTCACCCAAGGGCTTGAAGCTCTGAACCAGTCTCTCTCAGACACCATAGCTTCCGATTCACTAAGCATGCCCCCTAACATGGCTAACTACATGGGTCAGATGGCTTTAGCCATGAACAAGCTCTCTACTCTTGAAGGGTTCGTCAGACAGGCTGATAATCTGAGGCTGCAGACGATTCACCGGCTGCAAACACTCCTGACCACTCGCCAATCAGCGCGGTGTTTGCTGGCAATCGCCGAGTACTTCCATCGCCTCCGAGCTCTCAGCTCTCTCTGGATGGGCCGTCCTAGACAAGATCATCAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

534

Amino Acids

59.98

Weight (kDa)

6.47

Isoelectric Point (pI)

63.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	238 - 282	2.2e-07	Basic region leucine zipper
bZIP_1	PF00170	241 - 281	3.9e-08	bZIP transcription factor
DOG1	PF14144	331 - 405	2.1e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06839 AT5G06839 AT5G06839
fragaria_vesca	FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750
malus_domestica	MD12G1061900.v1.1 MD14G1062300.v1.1
prunus_persica	Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1
pyrus_communis	pycom12g05460 pycom14g04990
rosa_chinensis	RchiOBHm_Chr3g0480361
rosa_laevigata	RLG00000023490
rosa_roxburghii	Rroxscaffold_6G00401490
rosa_rugosa	Rorug03G0183200
rosa_samantha	Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400
rosa_wichuraiana	Rw3G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	643
AccII	CGCG	1 cut(s)	1513
AciI	CCGC	4 cut(s)	116, 664, 985, 1513
AcoI	YGGCCR	2 cut(s)	585, 1104
AcsI	RAATTY	1 cut(s)	228
AcuI	CTGAAG	1 cut(s)	1308
AfaI	GTAC	3 cut(s)	421, 520, 1538
AfiI	CCNNNNNNNGG	1 cut(s)	1375
AgsI	TTSAA	7 cut(s)	98, 233, 401, 463, 555, 1313, 1430
AjnI	CCWGG	2 cut(s)	758, 858
Alw21I	GWGCWC	3 cut(s)	981, 1002, 1558
Alw26I	GTCTC	2 cut(s)	553, 1332
AlwNI	CAGNNNCTG	1 cut(s)	938
AoxI	GGCC	5 cut(s)	449, 585, 1104, 1187, 1576
ApoI	RAATTY	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	532
AspLEI	GCGC	1 cut(s)	1513
AspS9I	GGNCC	4 cut(s)	671, 701, 1188, 1576
AsuHPI	GGTGA	4 cut(s)	814, 1093, 1291, 1466
AvaII	GGWCC	2 cut(s)	671, 701
BalI	TGGCCA	2 cut(s)	587, 1106
BanII	GRGCYC	2 cut(s)	1002, 1558
BbsI	GAAGAC	3 cut(s)	86, 1151, 1296
Bbv12I	GWGCWC	3 cut(s)	981, 1002, 1558
BbvCI	CCTCAGC	1 cut(s)	1040
BceAI	ACGGC	2 cut(s)	556, 1563
BciT130I	CCWGG	2 cut(s)	760, 860
BcoDI	GTCTC	2 cut(s)	553, 1332
BfaI	CTAG	5 cut(s)	75, 326, 435, 852, 1584
BfmI	CTRYAG	4 cut(s)	423, 522, 939, 1463
BfuAI	ACCTGC	1 cut(s)	643
BmcAI	AGTACT	2 cut(s)	520, 1538
Bme1390I	CCNGG	2 cut(s)	760, 860
Bme18I	GGWCC	2 cut(s)	671, 701
BmgT120I	GGNCC	4 cut(s)	671, 701, 1188, 1576
BmiI	GGNNCC	1 cut(s)	672
BmrFI	CCNGG	2 cut(s)	760, 860
BmsI	GCATC	5 cut(s)	160, 226, 234, 595, 1151
BpiI	GAAGAC	3 cut(s)	86, 1151, 1296
BpmI	CTGGAG	1 cut(s)	1134
Bpu10I	CCTNAGC	2 cut(s)	439, 1040
BpuEI	CTTGAG	2 cut(s)	992, 1076
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	553
BsaJI	CCNNGG	4 cut(s)	576, 858, 859, 1303
Bsc4I	CCNNNNNNNGG	1 cut(s)	1375
Bse118I	RCCGGY	1 cut(s)	1476
Bse1I	ACTGG	3 cut(s)	90, 908, 1324
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	760, 860
BseDI	CCNNGG	4 cut(s)	576, 858, 859, 1303
BseGI	GGATG	4 cut(s)	254, 264, 1179, 1578
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	1 cut(s)	1375
BseNI	ACTGG	3 cut(s)	90, 908, 1324
BseRI	GAGGAG	3 cut(s)	38, 378, 989
BseYI	CCCAGC	1 cut(s)	825
Bsh1236I	CGCG	1 cut(s)	1513
BshFI	GGCC	5 cut(s)	451, 587, 1106, 1189, 1578
BsiHKAI	GWGCWC	3 cut(s)	981, 1002, 1558
BsiSI	CCGG	2 cut(s)	1186, 1477
BslFI	GGGAC	1 cut(s)	684
BslI	CCNNNNNNNGG	1 cut(s)	1375
BsmAI	GTCTC	2 cut(s)	553, 1332
BsmFI	GGGAC	1 cut(s)	684
BsnI	GGCC	5 cut(s)	451, 587, 1106, 1189, 1578
Bso31I	GGTCTC	1 cut(s)	553
Bsp1286I	GDGCHC	3 cut(s)	981, 1002, 1558
Bsp143I	GATC	5 cut(s)	313, 328, 364, 427, 1591
Bsp19I	CCATGG	1 cut(s)	576
BspACI	CCGC	4 cut(s)	116, 664, 985, 1513
BspANI	GGCC	5 cut(s)	451, 587, 1106, 1189, 1578
BspFNI	CGCG	1 cut(s)	1513
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	672
BspMAI	CTGCAG	4 cut(s)	427, 526, 943, 1467
BspMI	ACCTGC	1 cut(s)	643
BspTNI	GGTCTC	1 cut(s)	553
BsrFI	RCCGGY	1 cut(s)	1476
BsrI	ACTGG	3 cut(s)	90, 908, 1324
BssAI	RCCGGY	1 cut(s)	1476
BssECI	CCNNGG	4 cut(s)	576, 858, 859, 1303
BssMI	GATC	5 cut(s)	313, 328, 364, 427, 1591
BssT1I	CCWWGG	2 cut(s)	576, 1303
Bst2UI	CCWGG	2 cut(s)	760, 860
Bst4CI	ACNGT	2 cut(s)	302, 1061
BstC8I	GCNNGC	6 cut(s)	72, 323, 738, 770, 1364, 1524
BstDSI	CCRYGG	1 cut(s)	576
BstEII	GGTNACC	1 cut(s)	659
BstF5I	GGATG	4 cut(s)	254, 264, 1179, 1578
BstFNI	CGCG	1 cut(s)	1513
BstHHI	GCGC	1 cut(s)	1513
BstKTI	GATC	5 cut(s)	316, 331, 367, 430, 1594
BstMAI	GTCTC	2 cut(s)	553, 1332
BstMBI	GATC	5 cut(s)	313, 328, 364, 427, 1591
BstMWI	GCNNNNNNNGC	7 cut(s)	124, 202, 493, 826, 976, 1292, 1519
BstNI	CCWGG	2 cut(s)	760, 860
BstNSI	RCATGY	4 cut(s)	491, 868, 1141, 1366
BstPI	GGTNACC	1 cut(s)	659
BstSCI	CCNGG	2 cut(s)	758, 858
BstSFI	CTRYAG	4 cut(s)	423, 522, 939, 1463
BstUI	CGCG	1 cut(s)	1513
BstV2I	GAAGAC	3 cut(s)	86, 1151, 1296
BstXI	CCANNNNNNTGG	1 cut(s)	583
BsuRI	GGCC	5 cut(s)	451, 587, 1106, 1189, 1578
BtgI	CCRYGG	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	1529
BtsCI	GGATG	4 cut(s)	254, 264, 1179, 1578
BtsIMutI	CAGTG	3 cut(s)	307, 725, 1229
BveI	ACCTGC	1 cut(s)	643
Cac8I	GCNNGC	6 cut(s)	72, 323, 738, 770, 1364, 1524
CaiI	CAGNNNCTG	1 cut(s)	938
CciI	TCATGA	1 cut(s)	223
CfoI	GCGC	1 cut(s)	1513
Cfr10I	RCCGGY	1 cut(s)	1476
Cfr13I	GGNCC	4 cut(s)	671, 701, 1188, 1576
CseI	GACGC	2 cut(s)	944, 1301
Csp6I	GTAC	3 cut(s)	420, 519, 1537
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviQI	GTAC	3 cut(s)	420, 519, 1537
DpnI	GATC	5 cut(s)	315, 330, 366, 429, 1593
DpnII	GATC	5 cut(s)	313, 328, 364, 427, 1591
EaeI	YGGCCR	2 cut(s)	585, 1104
Ecl136II	GAGCTC	2 cut(s)	1000, 1556
Eco130I	CCWWGG	2 cut(s)	576, 1303
Eco147I	AGGCCT	1 cut(s)	451
Eco24I	GRGCYC	2 cut(s)	1002, 1558
Eco31I	GGTCTC	1 cut(s)	553
Eco47I	GGWCC	2 cut(s)	671, 701
Eco53kI	GAGCTC	2 cut(s)	1000, 1556
Eco57I	CTGAAG	1 cut(s)	1308
Eco91I	GGTNACC	1 cut(s)	659
EcoICRI	GAGCTC	2 cut(s)	1000, 1556
EcoO65I	GGTNACC	1 cut(s)	659
EcoRII	CCWGG	2 cut(s)	758, 858
EcoT14I	CCWWGG	2 cut(s)	576, 1303
EcoT22I	ATGCAT	1 cut(s)	489
EcoT38I	GRGCYC	2 cut(s)	1002, 1558
ErhI	CCWWGG	2 cut(s)	576, 1303
FaqI	GGGAC	1 cut(s)	684
FauI	CCCGC	1 cut(s)	123
FauNDI	CATATG	2 cut(s)	310, 787
FokI	GGATG	4 cut(s)	241, 251, 1186, 1585
FriOI	GRGCYC	2 cut(s)	1002, 1558
FspBI	CTAG	5 cut(s)	75, 326, 435, 852, 1584
GlaI	GCGC	1 cut(s)	1512
GsaI	CCCAGC	1 cut(s)	829
GsuI	CTGGAG	1 cut(s)	1134
HaeIII	GGCC	5 cut(s)	451, 587, 1106, 1189, 1578
HapII	CCGG	2 cut(s)	1186, 1477
HgaI	GACGC	2 cut(s)	944, 1301
HhaI	GCGC	1 cut(s)	1513
Hin6I	GCGC	1 cut(s)	1511
HinP1I	GCGC	1 cut(s)	1511
HinfI	GANTC	5 cut(s)	803, 1147, 1182, 1352, 1471
HpaII	CCGG	2 cut(s)	1186, 1477
HphI	GGTGA	4 cut(s)	814, 1093, 1291, 1466
Hpy166II	GTNNAC	1 cut(s)	1054
Hpy8I	GTNNAC	1 cut(s)	1054
HpyAV	CCTTC	3 cut(s)	692, 726, 1424
HpyCH4III	ACNGT	2 cut(s)	302, 1061
HpyCH4IV	ACGT	1 cut(s)	396
HpyF10VI	GCNNNNNNNGC	7 cut(s)	124, 202, 493, 826, 976, 1292, 1519
HpySE526I	ACGT	1 cut(s)	396
HspAI	GCGC	1 cut(s)	1511
Kzo9I	GATC	5 cut(s)	313, 328, 364, 427, 1591
LmnI	GCTCC	7 cut(s)	305, 391, 619, 890, 976, 1005, 1237
LweI	GCATC	5 cut(s)	160, 226, 234, 595, 1151
MaeI	CTAG	5 cut(s)	75, 326, 435, 852, 1584
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	3 cut(s)	659, 1213, 1263
MalI	GATC	5 cut(s)	315, 330, 366, 429, 1593
MboI	GATC	5 cut(s)	313, 328, 364, 427, 1591
MboII	GAAGA	5 cut(s)	44, 86, 528, 1156, 1301
MfeI	CAATTG	1 cut(s)	56
MhlI	GDGCHC	3 cut(s)	981, 1002, 1558
MlsI	TGGCCA	2 cut(s)	587, 1106
MluCI	AATT	3 cut(s)	56, 228, 600
MluNI	TGGCCA	2 cut(s)	587, 1106
MlyI	GAGTC	2 cut(s)	812, 1141
MmeI	TCCRAC	2 cut(s)	285, 479
Mox20I	TGGCCA	2 cut(s)	587, 1106
Mph1103I	ATGCAT	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	532
MscI	TGGCCA	2 cut(s)	587, 1106
MseI	TTAA	2 cut(s)	816, 1203
MslI	CAYNNNNRTG	3 cut(s)	222, 1074, 1172
Msp20I	TGGCCA	2 cut(s)	587, 1106
MspA1I	CMGCKG	3 cut(s)	829, 1010, 1154
MspI	CCGG	2 cut(s)	1186, 1477
MspR9I	CCNGG	2 cut(s)	760, 860
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	2 cut(s)	760, 860
MvnI	CGCG	1 cut(s)	1513
MwoI	GCNNNNNNNGC	7 cut(s)	124, 202, 493, 826, 976, 1292, 1519
NcoI	CCATGG	1 cut(s)	576
NdeI	CATATG	2 cut(s)	310, 787
NdeII	GATC	5 cut(s)	313, 328, 364, 427, 1591
NlaIV	GGNNCC	1 cut(s)	672
NmeAIII	GCCGAG	1 cut(s)	1558
NmuCI	GTSAC	1 cut(s)	1213
NsiI	ATGCAT	1 cut(s)	489
NspI	RCATGY	4 cut(s)	491, 868, 1141, 1366
PaeI	GCATGC	1 cut(s)	1366
PagI	TCATGA	1 cut(s)	223
PasI	CCCWGGG	1 cut(s)	859
PceI	AGGCCT	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	3 cut(s)	1182, 1352, 1471
PleI	GAGTC	2 cut(s)	811, 1141
PpsI	GAGTC	2 cut(s)	811, 1141
Psp124BI	GAGCTC	2 cut(s)	1002, 1558
Psp6I	CCWGG	2 cut(s)	758, 858
PspEI	GGTNACC	1 cut(s)	659
PspFI	CCCAGC	1 cut(s)	825
PspGI	CCWGG	2 cut(s)	758, 858
PspN4I	GGNNCC	1 cut(s)	672
PspPI	GGNCC	4 cut(s)	671, 701, 1188, 1576
PstI	CTGCAG	4 cut(s)	427, 526, 943, 1467
PstNI	CAGNNNCTG	1 cut(s)	938
PvuII	CAGCTG	3 cut(s)	829, 1010, 1154
RsaI	GTAC	3 cut(s)	421, 520, 1538
RsaNI	GTAC	3 cut(s)	420, 519, 1537
RseI	CAYNNNNRTG	3 cut(s)	222, 1074, 1172
SacI	GAGCTC	2 cut(s)	1002, 1558
SaqAI	TTAA	2 cut(s)	816, 1203
Sau3AI	GATC	5 cut(s)	313, 328, 364, 427, 1591
Sau96I	GGNCC	4 cut(s)	671, 701, 1188, 1576
ScaI	AGTACT	2 cut(s)	520, 1538
SchI	GAGTC	2 cut(s)	812, 1141
ScrFI	CCNGG	2 cut(s)	760, 860
SduI	GDGCHC	3 cut(s)	981, 1002, 1558
SfaNI	GCATC	5 cut(s)	160, 226, 234, 595, 1151
SfcI	CTRYAG	4 cut(s)	423, 522, 939, 1463
SinI	GGWCC	2 cut(s)	671, 701
SmiMI	CAYNNNNRTG	3 cut(s)	222, 1074, 1172
SmlI	CTYRAG	2 cut(s)	971, 1091
SmoI	CTYRAG	2 cut(s)	971, 1091
SphI	GCATGC	1 cut(s)	1366
Sse9I	AATT	3 cut(s)	56, 228, 600
SseBI	AGGCCT	1 cut(s)	451
SsiI	CCGC	4 cut(s)	116, 664, 985, 1513
SspMI	CTAG	5 cut(s)	75, 326, 435, 852, 1584
SstI	GAGCTC	2 cut(s)	1002, 1558
StuI	AGGCCT	1 cut(s)	451
StyD4I	CCNGG	2 cut(s)	758, 858
StyI	CCWWGG	2 cut(s)	576, 1303
TaaI	ACNGT	2 cut(s)	302, 1061
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	4 cut(s)	11, 806, 948, 1224
TasI	AATT	3 cut(s)	56, 228, 600
TatI	WGTACW	3 cut(s)	419, 518, 1536
TfiI	GAWTC	3 cut(s)	1182, 1352, 1471
Tru1I	TTAA	2 cut(s)	816, 1203
Tru9I	TTAA	2 cut(s)	816, 1203
TscAI	CASTG	3 cut(s)	307, 732, 1236
TseFI	GTSAC	1 cut(s)	1213
Tsp45I	GTSAC	1 cut(s)	1213
TspDTI	ATGAA	6 cut(s)	70, 240, 271, 1100, 1156, 1424
TspGWI	ACGGA	2 cut(s)	252, 1250
TspRI	CASTG	3 cut(s)	307, 732, 1236
VpaK11BI	GGWCC	2 cut(s)	671, 701
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	4 cut(s)	491, 868, 1141, 1366
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	5 cut(s)	75, 326, 435, 852, 1584
ZrmI	AGTACT	2 cut(s)	520, 1538
Zsp2I	ATGCAT	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.