Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009463

Physical Location & Seq

Genomic Coordinates Forward (+)

25807690 .. 25814266

Gene Structure 6577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG260400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGGGGTTTTCGAGAGCTTTTGAGGAGGCAGAAGAAAGAGCAGGAGAGCAACCTCAATTGGAAACAAAGCTCGCTAGTTTCATGGCTTCCAGTCTTCAAGGAAATCAACTCAACCCGCAACAACAGCAACCACAACAACAACAACAACAAGAGCATCATCATCATCATCAAATACAAAACCACCATCATCATCAGCAGCAACAGCAACAACAACAGCATCATCATGAAATTCAATACGGAATGATGCAGTCATCATCCTCAAACATCCCATCTGGGAACTTCATGGGAAGCAGCAAAGACAGTGGAGCATATGATCTGGGCGAGCTAGATCAAGCCCTTTTCCTCTACCTTGATGGACAACAAGATCATCATCATCATCATCATCAAGCTCCTCATCACGTTCAAGACCAACGACATCAAACTAGCTCAGGAATGAGGCCTCCAACTTTGAACATCTTTCCATCTGAGCCTATGCATGTAGAGCCATCATCAACCAAAGGTGTTAGTACTGCAGGAATAGTTTCTTCTGCAACGAGTGGTTCAAAGAGACCATCAGAGCCGTCCATGGAGTTGGCCAACCCACGCAAAATTGATGCTGCTGCTCCATCTGGACTTCCTGAACCTGCCAAGACTATCAAGCGTGAGGGTAACCGCAAGGGACCAACTACATCAAGTTCAGAGCAAGAAGGACCAAAAACACCAGACCCTAAGACACTGAGAAGGCTTGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTCAGAAAAAAGGCATATGTTCAGCAGTTAGAGTCGAGTAGGATTAAGCTCACCCAGCTGGAACAAGAGCTGCAAAGAGCTAGAACCCAGGGCATGTTCTTTGGAGGTGGTCTTGTAGGAGCAGAACAAGGTGTTCCAGTTGGTATAAACAACATTAGCTCAGACGCTGCAGTTTTCGACATGGAGTATGCTCGTTGGCTTGAGGAGCACCACCGCCTGATGTGTGAGCTCCGAGCAGCTGTGCAAGAACATTTGCCAGAGAATGAGCTGAGGCTGTTTGTGGACAACTGTTTGGCACACTATGATGAGGTGATGAACCTCAAGAGCATGGTGGCCAAAACCGATGTGTTTCACATTGTTTCAGGCATGTGGAAGACTCCAGCTGAAAGATGCTTCATGTGGATGGGTGGATTTCGGCCCTCTGAGGTCATTAAGGTAATTGCATATATGCTTATTCTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

407

Amino Acids

45.94

Weight (kDa)

6.62

Isoelectric Point (pI)

64.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	234 - 278	1.5e-07	Basic region leucine zipper
bZIP_1	PF00170	237 - 277	2.7e-08	bZIP transcription factor
DOG1	PF14144	327 - 400	2e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06839 AT5G06839 AT5G06839
fragaria_vesca	FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750
malus_domestica	MD12G1061900.v1.1 MD14G1062300.v1.1
prunus_persica	Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1
pyrus_communis	pycom12g05460 pycom14g04990
rosa_chinensis	RchiOBHm_Chr3g0480361
rosa_laevigata	RLG00000023490
rosa_roxburghii	Rroxscaffold_6G00401490
rosa_rugosa	Rorug03G0183200
rosa_samantha	Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400
rosa_wichuraiana	Rw3G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	631
AciI	CCGC	3 cut(s)	116, 652, 973
AcoI	YGGCCR	2 cut(s)	573, 1092
AcsI	RAATTY	1 cut(s)	228
AfaI	GTAC	1 cut(s)	508
AgsI	TTSAA	5 cut(s)	98, 233, 404, 451, 543
AjnI	CCWGG	2 cut(s)	746, 846
Alw21I	GWGCWC	2 cut(s)	969, 990
Alw26I	GTCTC	1 cut(s)	541
AlwNI	CAGNNNCTG	1 cut(s)	926
AoxI	GGCC	4 cut(s)	437, 573, 1092, 1175
ApeKI	GCWGC	8 cut(s)	196, 291, 596, 599, 743, 829, 926, 995
ApoI	RAATTY	1 cut(s)	228
Asp700I	GAANNNNTTC	1 cut(s)	520
AspS9I	GGNCC	3 cut(s)	659, 689, 1176
AsuHPI	GGTGA	2 cut(s)	802, 1081
AvaII	GGWCC	2 cut(s)	659, 689
BalI	TGGCCA	2 cut(s)	575, 1094
BanII	GRGCYC	1 cut(s)	990
BbsI	GAAGAC	2 cut(s)	86, 1139
Bbv12I	GWGCWC	2 cut(s)	969, 990
BbvCI	CCTCAGC	1 cut(s)	1028
BbvI	GCAGC	8 cut(s)	208, 303, 583, 586, 755, 816, 913, 1007
BccI	CCATC	8 cut(s)	192, 277, 347, 469, 493, 559, 613, 1156
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	2 cut(s)	748, 848
BcoDI	GTCTC	1 cut(s)	541
BfaI	CTAG	4 cut(s)	75, 326, 423, 840
BfmI	CTRYAG	2 cut(s)	510, 927
BfuAI	ACCTGC	1 cut(s)	631
BisI	GCNGC	8 cut(s)	197, 292, 597, 600, 744, 830, 927, 996
BlsI	GCNGC	8 cut(s)	198, 293, 598, 601, 745, 831, 928, 997
BmcAI	AGTACT	1 cut(s)	508
Bme1390I	CCNGG	2 cut(s)	748, 848
Bme18I	GGWCC	2 cut(s)	659, 689
BmgT120I	GGNCC	3 cut(s)	659, 689, 1176
BmiI	GGNNCC	1 cut(s)	660
BmrFI	CCNGG	2 cut(s)	748, 848
BmsI	GCATC	5 cut(s)	163, 226, 234, 583, 1139
BpiI	GAAGAC	2 cut(s)	86, 1139
BpmI	CTGGAG	1 cut(s)	1122
Bpu10I	CCTNAGC	2 cut(s)	427, 1028
BpuEI	CTTGAG	2 cut(s)	980, 1064
BsaBI	GATNNNNATC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	541
BsaJI	CCNNGG	3 cut(s)	564, 846, 847
Bse1I	ACTGG	2 cut(s)	90, 896
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	748, 848
BseDI	CCNNGG	3 cut(s)	564, 846, 847
BseGI	GGATG	3 cut(s)	254, 264, 1167
BseJI	GATNNNNATC	1 cut(s)	369
BseMII	CTCAG	8 cut(s)	441, 456, 707, 743, 775, 933, 1019, 1173
BseNI	ACTGG	2 cut(s)	90, 896
BseRI	GAGGAG	3 cut(s)	38, 381, 977
BseXI	GCAGC	8 cut(s)	208, 303, 583, 586, 755, 816, 913, 1007
BseYI	CCCAGC	1 cut(s)	813
BshFI	GGCC	4 cut(s)	439, 575, 1094, 1177
BsiHKAI	GWGCWC	2 cut(s)	969, 990
BslFI	GGGAC	1 cut(s)	672
BsmAI	GTCTC	1 cut(s)	541
BsmFI	GGGAC	1 cut(s)	672
BsnI	GGCC	4 cut(s)	439, 575, 1094, 1177
Bso31I	GGTCTC	1 cut(s)	541
Bsp1286I	GDGCHC	2 cut(s)	969, 990
Bsp143I	GATC	3 cut(s)	313, 328, 364
Bsp19I	CCATGG	1 cut(s)	564
BspACI	CCGC	3 cut(s)	116, 652, 973
BspANI	GGCC	4 cut(s)	439, 575, 1094, 1177
BspCNI	CTCAG	8 cut(s)	440, 457, 708, 742, 774, 932, 1020, 1174
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	660
BspMAI	CTGCAG	2 cut(s)	514, 931
BspMI	ACCTGC	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	541
BsrI	ACTGG	2 cut(s)	90, 896
BssECI	CCNNGG	3 cut(s)	564, 846, 847
BssMI	GATC	3 cut(s)	313, 328, 364
BssT1I	CCWWGG	1 cut(s)	564
Bst2UI	CCWGG	2 cut(s)	748, 848
Bst4CI	ACNGT	2 cut(s)	302, 1049
BstC8I	GCNNGC	4 cut(s)	72, 323, 726, 758
BstDEI	CTNAG	9 cut(s)	427, 465, 708, 716, 729, 761, 919, 1028, 1182
BstDSI	CCRYGG	1 cut(s)	564
BstEII	GGTNACC	1 cut(s)	647
BstF5I	GGATG	3 cut(s)	254, 264, 1167
BstKTI	GATC	3 cut(s)	316, 331, 367
BstMAI	GTCTC	1 cut(s)	541
BstMBI	GATC	3 cut(s)	313, 328, 364
BstMWI	GCNNNNNNNGC	5 cut(s)	124, 202, 481, 814, 964
BstNI	CCWGG	2 cut(s)	748, 848
BstNSI	RCATGY	3 cut(s)	479, 856, 1129
BstPI	GGTNACC	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	746, 846
BstSFI	CTRYAG	2 cut(s)	510, 927
BstV1I	GCAGC	8 cut(s)	208, 303, 583, 586, 755, 816, 913, 1007
BstV2I	GAAGAC	2 cut(s)	86, 1139
BstXI	CCANNNNNNTGG	1 cut(s)	571
BsuRI	GGCC	4 cut(s)	439, 575, 1094, 1177
BtgI	CCRYGG	1 cut(s)	564
BtsCI	GGATG	3 cut(s)	254, 264, 1167
BtsIMutI	CAGTG	2 cut(s)	307, 713
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	4 cut(s)	72, 323, 726, 758
CaiI	CAGNNNCTG	1 cut(s)	926
CciI	TCATGA	1 cut(s)	223
Cfr13I	GGNCC	3 cut(s)	659, 689, 1176
CseI	GACGC	1 cut(s)	932
Csp6I	GTAC	1 cut(s)	507
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviQI	GTAC	1 cut(s)	507
DdeI	CTNAG	9 cut(s)	427, 465, 708, 716, 729, 761, 919, 1028, 1182
DpnI	GATC	3 cut(s)	315, 330, 366
DpnII	GATC	3 cut(s)	313, 328, 364
EaeI	YGGCCR	2 cut(s)	573, 1092
Ecl136II	GAGCTC	1 cut(s)	988
Eco130I	CCWWGG	1 cut(s)	564
Eco147I	AGGCCT	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	990
Eco31I	GGTCTC	1 cut(s)	541
Eco47I	GGWCC	2 cut(s)	659, 689
Eco53kI	GAGCTC	1 cut(s)	988
Eco91I	GGTNACC	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	988
EcoO65I	GGTNACC	1 cut(s)	647
EcoRII	CCWGG	2 cut(s)	746, 846
EcoT14I	CCWWGG	1 cut(s)	564
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	990
ErhI	CCWWGG	1 cut(s)	564
FaqI	GGGAC	1 cut(s)	672
FauI	CCCGC	1 cut(s)	123
FauNDI	CATATG	2 cut(s)	310, 775
Fnu4HI	GCNGC	8 cut(s)	197, 292, 597, 600, 744, 830, 927, 996
FokI	GGATG	3 cut(s)	241, 251, 1174
FriOI	GRGCYC	1 cut(s)	990
Fsp4HI	GCNGC	8 cut(s)	197, 292, 597, 600, 744, 830, 927, 996
FspBI	CTAG	4 cut(s)	75, 326, 423, 840
GluI	GCNGC	8 cut(s)	197, 292, 597, 600, 744, 830, 927, 996
GsaI	CCCAGC	1 cut(s)	817
GsuI	CTGGAG	1 cut(s)	1122
HaeIII	GGCC	4 cut(s)	439, 575, 1094, 1177
HgaI	GACGC	1 cut(s)	932
HinfI	GANTC	2 cut(s)	791, 1135
HphI	GGTGA	2 cut(s)	802, 1081
Hpy166II	GTNNAC	1 cut(s)	1042
Hpy188I	TCNGA	8 cut(s)	466, 556, 679, 732, 764, 922, 992, 1183
Hpy188III	TCNNGA	8 cut(s)	12, 224, 404, 429, 609, 617, 1081, 1217
Hpy8I	GTNNAC	1 cut(s)	1042
HpyAV	CCTTC	2 cut(s)	680, 714
HpyCH4III	ACNGT	2 cut(s)	302, 1049
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	8 cut(s)	247, 475, 512, 530, 832, 929, 1003, 1202
HpyF10VI	GCNNNNNNNGC	5 cut(s)	124, 202, 481, 814, 964
HpyF3I	CTNAG	9 cut(s)	427, 465, 708, 716, 729, 761, 919, 1028, 1182
HpySE526I	ACGT	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	313, 328, 364
LmnI	GCTCC	6 cut(s)	305, 394, 607, 878, 964, 993
Lsp1109I	GCAGC	8 cut(s)	208, 303, 583, 586, 755, 816, 913, 1007
LweI	GCATC	5 cut(s)	163, 226, 234, 583, 1139
MaeI	CTAG	4 cut(s)	75, 326, 423, 840
MaeII	ACGT	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	3 cut(s)	315, 330, 366
MboI	GATC	3 cut(s)	313, 328, 364
MboII	GAAGA	4 cut(s)	44, 86, 516, 1144
MfeI	CAATTG	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	969, 990
MlsI	TGGCCA	2 cut(s)	575, 1094
MluCI	AATT	4 cut(s)	56, 228, 588, 1197
MluNI	TGGCCA	2 cut(s)	575, 1094
MlyI	GAGTC	2 cut(s)	800, 1129
MmeI	TCCRAC	1 cut(s)	467
Mox20I	TGGCCA	2 cut(s)	575, 1094
Mph1103I	ATGCAT	1 cut(s)	477
MroXI	GAANNNNTTC	1 cut(s)	520
MscI	TGGCCA	2 cut(s)	575, 1094
MseI	TTAA	3 cut(s)	804, 1191, 1222
MslI	CAYNNNNRTG	3 cut(s)	222, 1062, 1160
Msp20I	TGGCCA	2 cut(s)	575, 1094
MspA1I	CMGCKG	3 cut(s)	817, 998, 1142
MspR9I	CCNGG	2 cut(s)	748, 848
MunI	CAATTG	1 cut(s)	56
MvaI	CCWGG	2 cut(s)	748, 848
MwoI	GCNNNNNNNGC	5 cut(s)	124, 202, 481, 814, 964
NcoI	CCATGG	1 cut(s)	564
NdeI	CATATG	2 cut(s)	310, 775
NdeII	GATC	3 cut(s)	313, 328, 364
NlaIV	GGNNCC	1 cut(s)	660
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	3 cut(s)	479, 856, 1129
PagI	TCATGA	1 cut(s)	223
PasI	CCCWGGG	1 cut(s)	847
PceI	AGGCCT	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	520
PkrI	GCNGC	8 cut(s)	198, 293, 598, 601, 745, 831, 928, 997
PleI	GAGTC	2 cut(s)	799, 1129
PpsI	GAGTC	2 cut(s)	799, 1129
Psp124BI	GAGCTC	1 cut(s)	990
Psp6I	CCWGG	2 cut(s)	746, 846
PspEI	GGTNACC	1 cut(s)	647
PspFI	CCCAGC	1 cut(s)	813
PspGI	CCWGG	2 cut(s)	746, 846
PspN4I	GGNNCC	1 cut(s)	660
PspPI	GGNCC	3 cut(s)	659, 689, 1176
PstI	CTGCAG	2 cut(s)	514, 931
PstNI	CAGNNNCTG	1 cut(s)	926
PvuII	CAGCTG	3 cut(s)	817, 998, 1142
RsaI	GTAC	1 cut(s)	508
RsaNI	GTAC	1 cut(s)	507
RseI	CAYNNNNRTG	3 cut(s)	222, 1062, 1160
SacI	GAGCTC	1 cut(s)	990
SaqAI	TTAA	3 cut(s)	804, 1191, 1222
SatI	GCNGC	8 cut(s)	197, 292, 597, 600, 744, 830, 927, 996
Sau3AI	GATC	3 cut(s)	313, 328, 364
Sau96I	GGNCC	3 cut(s)	659, 689, 1176
ScaI	AGTACT	1 cut(s)	508
SchI	GAGTC	2 cut(s)	800, 1129
ScrFI	CCNGG	2 cut(s)	748, 848
SduI	GDGCHC	2 cut(s)	969, 990
SfaNI	GCATC	5 cut(s)	163, 226, 234, 583, 1139
SfcI	CTRYAG	2 cut(s)	510, 927
SinI	GGWCC	2 cut(s)	659, 689
SmiMI	CAYNNNNRTG	3 cut(s)	222, 1062, 1160
SmlI	CTYRAG	2 cut(s)	959, 1079
SmoI	CTYRAG	2 cut(s)	959, 1079
Sse9I	AATT	4 cut(s)	56, 228, 588, 1197
SseBI	AGGCCT	1 cut(s)	439
SsiI	CCGC	3 cut(s)	116, 652, 973
SspMI	CTAG	4 cut(s)	75, 326, 423, 840
SstI	GAGCTC	1 cut(s)	990
StuI	AGGCCT	1 cut(s)	439
StyD4I	CCNGG	2 cut(s)	746, 846
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	2 cut(s)	302, 1049
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	3 cut(s)	11, 794, 936
TasI	AATT	4 cut(s)	56, 228, 588, 1197
TatI	WGTACW	1 cut(s)	506
Tru1I	TTAA	3 cut(s)	804, 1191, 1222
Tru9I	TTAA	3 cut(s)	804, 1191, 1222
TscAI	CASTG	2 cut(s)	307, 720
TseI	GCWGC	8 cut(s)	196, 291, 596, 599, 743, 829, 926, 995
TspDTI	ATGAA	5 cut(s)	70, 240, 271, 1088, 1144
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	2 cut(s)	307, 720
VpaK11BI	GGWCC	2 cut(s)	659, 689
XapI	RAATTY	1 cut(s)	228
XceI	RCATGY	3 cut(s)	479, 856, 1129
XmnI	GAANNNNTTC	1 cut(s)	520
XspI	CTAG	4 cut(s)	75, 326, 423, 840
ZrmI	AGTACT	1 cut(s)	508
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.