Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009463

Physical Location & Seq

Genomic Coordinates Forward (+)

25934665 .. 25940267

Gene Structure 5603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG267200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGATGCAGTCATCATCCTCCAACATCCCATCTGGGAACTTCATAGGAAGCAGCAAAGACAGTGGAGCATATGATCTGGGCGAGCTAGATCAAGCCCTTTTCCTCTACCTTGATGGACAACAGGATCATCATCATCATCATCAAGCTCCTCATCACGTTCAAGACCAACGACATCAAACTAGCTCAGGAATGAGGCCTCCAACTTTGAACATCTTTCCATCTGAGCCTATGCATGTAGAGCCATCATCAACCAAAGGTGTTAGTACTGCAGGAATAGTTTCTTCTGCAACGAGTGGTTCAAAGAGACCATCAGAGCCGTCCATGGAGTTGGCCAACCCACGCAAAATTGATGCTGCTGCTCCATCTGGACTTCCTGAACCTGCCAAGACTATCAAGCGTGAGGGTAACCGCAAGGGACCAACCACATCAAGTTCAGAGCAAGAAGGACCAAAAACACCAGACCCTAAGACACTGAGAAGGCTTGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTCAGAAAAAAGGCATATGTTCAGCAGTTAGAGTCGAGTAGGATTAAGCTCACCCAGCTGGAACAAGAGCTGCAAAGAGCTAGAACCCAGGGCATGTTCTTTGGAGGTGGTCTTGTAGGAGCAGAACAAGGTGTTCCAGTTGGTATAAACAACATTAGCTCAGACGCTGCTGTTTTCGACATGGAGTATGCTCGTTGGCTTGAGGAGCACCACCGCCTGATGTGTGAGCTCCGAGCAGCTGTGCAAGAGCATTTGCCCGAGAATGAGCTGAGGCTGTTTGTGGACAACTGTTTGGCACACTATGATGAGGTGATGAACCTCAAGAGCATGGTGGCCAAAACCGATGTGTTTCACATTGTTTCAGGCATGTGGAAGACTCCAGCTGAAAGATGCTTCATGTGGATGGGTGGATTCCGGCCCTCTGAGGTCATTAAGATTATTGTGACCCAAATCGAGCCACTGACGGAGCAGCAACTAATGGCTATTTGTTCGTTACAACAATCCACAAGTGAAGCTGAAGACGCTCTCACCCAAGGGCTTGAAGCTCTGAACCAGTCTCTCTCAGACACCATAGCTTCCGATTCACTGAGCATGCCCCCTAACATGGCTAACTACATGGGTCAGATGGCTTTAGCCATGAACAAGCTCTCTACTCTCGAAGGGTTCGTCAGACAGGCTGATAATCTGCGGCTGCAGACGATTCACCGGCTGCAAACACTCCTGACCACTCGCCAATCAGCACGGTGTTTGCTGGCAATCGCCGAGTACTTCCATCGCCTCCGTGCTCTCAGCTCTCTCTGGATGGGCCGTCCTAGACAAGATCATCAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

449

Amino Acids

49.96

Weight (kDa)

7.0

Isoelectric Point (pI)

62.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	153 - 197	1.7e-07	Basic region leucine zipper
bZIP_1	PF00170	156 - 196	3.1e-08	bZIP transcription factor
DOG1	PF14144	246 - 320	1.6e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06839 AT5G06839 AT5G06839
fragaria_vesca	FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750
malus_domestica	MD12G1061900.v1.1 MD14G1062300.v1.1
prunus_persica	Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1
pyrus_communis	pycom12g05460 pycom14g04990
rosa_chinensis	RchiOBHm_Chr3g0480361
rosa_laevigata	RLG00000023490
rosa_roxburghii	Rroxscaffold_6G00401490
rosa_rugosa	Rorug03G0183200
rosa_samantha	Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400
rosa_wichuraiana	Rw3G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AciI	CCGC	3 cut(s)	409, 730, 1204
AclWI	GGATC	1 cut(s)	132
AcoI	YGGCCR	2 cut(s)	330, 849
AcuI	CTGAAG	1 cut(s)	1053
AfaI	GTAC	2 cut(s)	265, 1283
AfiI	CCNNNNNNNGG	1 cut(s)	1120
AgsI	TTSAA	4 cut(s)	161, 208, 300, 1058
AjnI	CCWGG	2 cut(s)	503, 603
Alw21I	GWGCWC	3 cut(s)	726, 747, 1303
Alw26I	GTCTC	2 cut(s)	298, 1077
AlwI	GGATC	1 cut(s)	132
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	773
AoxI	GGCC	5 cut(s)	194, 330, 849, 932, 1321
ArsI	GACNNNNNNTTYG	2 cut(s)	1167, 1199
Asp700I	GAANNNNTTC	1 cut(s)	277
AspS9I	GGNCC	4 cut(s)	416, 446, 933, 1321
AsuHPI	GGTGA	4 cut(s)	559, 838, 1036, 1211
AvaI	CYCGRG	1 cut(s)	773
AvaII	GGWCC	2 cut(s)	416, 446
BalI	TGGCCA	2 cut(s)	332, 851
BanII	GRGCYC	1 cut(s)	747
BbsI	GAAGAC	2 cut(s)	896, 1041
Bbv12I	GWGCWC	3 cut(s)	726, 747, 1303
BbvCI	CCTCAGC	1 cut(s)	785
BceAI	ACGGC	2 cut(s)	301, 1308
BciT130I	CCWGG	2 cut(s)	505, 605
BcoDI	GTCTC	2 cut(s)	298, 1077
BfaI	CTAG	4 cut(s)	86, 180, 597, 1329
BfmI	CTRYAG	2 cut(s)	267, 1208
BfuAI	ACCTGC	1 cut(s)	388
BmcAI	AGTACT	2 cut(s)	265, 1283
Bme1390I	CCNGG	2 cut(s)	505, 605
Bme18I	GGWCC	2 cut(s)	416, 446
BmeT110I	CYCGRG	1 cut(s)	773
BmgT120I	GGNCC	4 cut(s)	416, 446, 933, 1321
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	2 cut(s)	505, 605
BmsI	GCATC	2 cut(s)	340, 896
BpiI	GAAGAC	2 cut(s)	896, 1041
BpmI	CTGGAG	1 cut(s)	879
Bpu10I	CCTNAGC	2 cut(s)	184, 785
BpuEI	CTTGAG	2 cut(s)	737, 821
BsaBI	GATNNNNATC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	4 cut(s)	321, 603, 604, 1048
Bsc4I	CCNNNNNNNGG	1 cut(s)	1120
Bse118I	RCCGGY	1 cut(s)	1221
Bse1I	ACTGG	2 cut(s)	653, 1069
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	505, 605
BseDI	CCNNGG	4 cut(s)	321, 603, 604, 1048
BseGI	GGATG	4 cut(s)	14, 24, 924, 1323
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	1120
BseNI	ACTGG	2 cut(s)	653, 1069
BseRI	GAGGAG	2 cut(s)	138, 734
BseYI	CCCAGC	1 cut(s)	570
BshFI	GGCC	5 cut(s)	196, 332, 851, 934, 1323
BsiHKAI	GWGCWC	3 cut(s)	726, 747, 1303
BsiHKCI	CYCGRG	1 cut(s)	773
BsiSI	CCGG	2 cut(s)	931, 1222
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	1120
BsmAI	GTCTC	2 cut(s)	298, 1077
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	5 cut(s)	196, 332, 851, 934, 1323
Bso31I	GGTCTC	1 cut(s)	298
BsoBI	CYCGRG	1 cut(s)	773
Bsp1286I	GDGCHC	3 cut(s)	726, 747, 1303
Bsp143I	GATC	4 cut(s)	73, 88, 124, 1336
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	3 cut(s)	409, 730, 1204
BspANI	GGCC	5 cut(s)	196, 332, 851, 934, 1323
BspLI	GGNNCC	1 cut(s)	417
BspMAI	CTGCAG	2 cut(s)	271, 1212
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	132
BspTNI	GGTCTC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	1221
BsrI	ACTGG	2 cut(s)	653, 1069
BssAI	RCCGGY	1 cut(s)	1221
BssECI	CCNNGG	4 cut(s)	321, 603, 604, 1048
BssMI	GATC	4 cut(s)	73, 88, 124, 1336
BssT1I	CCWWGG	2 cut(s)	321, 1048
Bst2UI	CCWGG	2 cut(s)	505, 605
Bst4CI	ACNGT	3 cut(s)	62, 806, 1260
BstC8I	GCNNGC	5 cut(s)	83, 483, 515, 1109, 1269
BstDSI	CCRYGG	1 cut(s)	321
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	4 cut(s)	14, 24, 924, 1323
BstKTI	GATC	4 cut(s)	76, 91, 127, 1339
BstMAI	GTCTC	2 cut(s)	298, 1077
BstMBI	GATC	4 cut(s)	73, 88, 124, 1336
BstMWI	GCNNNNNNNGC	4 cut(s)	238, 571, 721, 1037
BstNI	CCWGG	2 cut(s)	505, 605
BstNSI	RCATGY	4 cut(s)	236, 613, 886, 1111
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	503, 603
BstSFI	CTRYAG	2 cut(s)	267, 1208
BstV2I	GAAGAC	2 cut(s)	896, 1041
BstXI	CCANNNNNNTGG	1 cut(s)	328
BsuRI	GGCC	5 cut(s)	196, 332, 851, 934, 1323
BtgI	CCRYGG	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	1274
BtsCI	GGATG	4 cut(s)	14, 24, 924, 1323
BtsIMutI	CAGTG	4 cut(s)	67, 470, 974, 1100
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	5 cut(s)	83, 483, 515, 1109, 1269
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr10I	RCCGGY	1 cut(s)	1221
Cfr13I	GGNCC	4 cut(s)	416, 446, 933, 1321
CseI	GACGC	2 cut(s)	689, 1046
Csp6I	GTAC	2 cut(s)	264, 1282
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviQI	GTAC	2 cut(s)	264, 1282
DpnI	GATC	4 cut(s)	75, 90, 126, 1338
DpnII	GATC	4 cut(s)	73, 88, 124, 1336
EaeI	YGGCCR	2 cut(s)	330, 849
Ecl136II	GAGCTC	1 cut(s)	745
Eco130I	CCWWGG	2 cut(s)	321, 1048
Eco147I	AGGCCT	1 cut(s)	196
Eco24I	GRGCYC	1 cut(s)	747
Eco31I	GGTCTC	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	416, 446
Eco53kI	GAGCTC	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	1053
Eco88I	CYCGRG	1 cut(s)	773
Eco91I	GGTNACC	1 cut(s)	404
EcoICRI	GAGCTC	1 cut(s)	745
EcoO65I	GGTNACC	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	503, 603
EcoT14I	CCWWGG	2 cut(s)	321, 1048
EcoT22I	ATGCAT	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	2 cut(s)	321, 1048
FaqI	GGGAC	1 cut(s)	429
FauNDI	CATATG	2 cut(s)	70, 532
FokI	GGATG	3 cut(s)	11, 931, 1330
FriOI	GRGCYC	1 cut(s)	747
FspBI	CTAG	4 cut(s)	86, 180, 597, 1329
GsaI	CCCAGC	1 cut(s)	574
GsuI	CTGGAG	1 cut(s)	879
HaeIII	GGCC	5 cut(s)	196, 332, 851, 934, 1323
HapII	CCGG	2 cut(s)	931, 1222
HgaI	GACGC	2 cut(s)	689, 1046
HinfI	GANTC	5 cut(s)	548, 892, 927, 1097, 1216
HpaII	CCGG	2 cut(s)	931, 1222
HphI	GGTGA	4 cut(s)	559, 838, 1036, 1211
Hpy166II	GTNNAC	1 cut(s)	799
Hpy188III	TCNNGA	8 cut(s)	161, 186, 366, 374, 838, 1172, 1237, 1315
Hpy8I	GTNNAC	1 cut(s)	799
HpyAV	CCTTC	3 cut(s)	437, 471, 1169
HpyCH4III	ACNGT	3 cut(s)	62, 806, 1260
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	8 cut(s)	7, 232, 269, 287, 589, 760, 1210, 1228
HpyF10VI	GCNNNNNNNGC	4 cut(s)	238, 571, 721, 1037
HpySE526I	ACGT	1 cut(s)	156
Kzo9I	GATC	4 cut(s)	73, 88, 124, 1336
LmnI	GCTCC	7 cut(s)	65, 151, 364, 635, 721, 750, 982
LweI	GCATC	2 cut(s)	340, 896
MaeI	CTAG	4 cut(s)	86, 180, 597, 1329
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	3 cut(s)	404, 958, 1008
MalI	GATC	4 cut(s)	75, 90, 126, 1338
MboI	GATC	4 cut(s)	73, 88, 124, 1336
MboII	GAAGA	3 cut(s)	273, 901, 1046
MhlI	GDGCHC	3 cut(s)	726, 747, 1303
MlsI	TGGCCA	2 cut(s)	332, 851
MluCI	AATT	1 cut(s)	345
MluNI	TGGCCA	2 cut(s)	332, 851
MlyI	GAGTC	2 cut(s)	557, 886
MmeI	TCCRAC	2 cut(s)	45, 224
Mox20I	TGGCCA	2 cut(s)	332, 851
Mph1103I	ATGCAT	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	277
MscI	TGGCCA	2 cut(s)	332, 851
MseI	TTAA	2 cut(s)	561, 948
MslI	CAYNNNNRTG	2 cut(s)	819, 917
Msp20I	TGGCCA	2 cut(s)	332, 851
MspA1I	CMGCKG	3 cut(s)	574, 755, 899
MspI	CCGG	2 cut(s)	931, 1222
MspR9I	CCNGG	2 cut(s)	505, 605
MvaI	CCWGG	2 cut(s)	505, 605
MwoI	GCNNNNNNNGC	4 cut(s)	238, 571, 721, 1037
NcoI	CCATGG	1 cut(s)	321
NdeI	CATATG	2 cut(s)	70, 532
NdeII	GATC	4 cut(s)	73, 88, 124, 1336
NlaIV	GGNNCC	1 cut(s)	417
NmeAIII	GCCGAG	1 cut(s)	1303
NmuCI	GTSAC	1 cut(s)	958
NsiI	ATGCAT	1 cut(s)	234
NspI	RCATGY	4 cut(s)	236, 613, 886, 1111
PaeI	GCATGC	1 cut(s)	1111
PasI	CCCWGGG	1 cut(s)	604
PceI	AGGCCT	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	1179
PdmI	GAANNNNTTC	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	927, 1097, 1216
PleI	GAGTC	2 cut(s)	556, 886
PpsI	GAGTC	2 cut(s)	556, 886
Psp124BI	GAGCTC	1 cut(s)	747
Psp6I	CCWGG	2 cut(s)	503, 603
PspEI	GGTNACC	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	570
PspGI	CCWGG	2 cut(s)	503, 603
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	4 cut(s)	416, 446, 933, 1321
PstI	CTGCAG	2 cut(s)	271, 1212
PstNI	CAGNNNCTG	1 cut(s)	683
PvuII	CAGCTG	3 cut(s)	574, 755, 899
RsaI	GTAC	2 cut(s)	265, 1283
RsaNI	GTAC	2 cut(s)	264, 1282
RseI	CAYNNNNRTG	2 cut(s)	819, 917
SacI	GAGCTC	1 cut(s)	747
SaqAI	TTAA	2 cut(s)	561, 948
Sau3AI	GATC	4 cut(s)	73, 88, 124, 1336
Sau96I	GGNCC	4 cut(s)	416, 446, 933, 1321
ScaI	AGTACT	2 cut(s)	265, 1283
SchI	GAGTC	2 cut(s)	557, 886
ScrFI	CCNGG	2 cut(s)	505, 605
SduI	GDGCHC	3 cut(s)	726, 747, 1303
SfaNI	GCATC	2 cut(s)	340, 896
SfcI	CTRYAG	2 cut(s)	267, 1208
SinI	GGWCC	2 cut(s)	416, 446
SmiMI	CAYNNNNRTG	2 cut(s)	819, 917
SmlI	CTYRAG	2 cut(s)	716, 836
SmoI	CTYRAG	2 cut(s)	716, 836
SphI	GCATGC	1 cut(s)	1111
Sse9I	AATT	1 cut(s)	345
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	3 cut(s)	409, 730, 1204
SspMI	CTAG	4 cut(s)	86, 180, 597, 1329
SstI	GAGCTC	1 cut(s)	747
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	503, 603
StyI	CCWWGG	2 cut(s)	321, 1048
TaaI	ACNGT	3 cut(s)	62, 806, 1260
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	4 cut(s)	551, 693, 969, 1173
TasI	AATT	1 cut(s)	345
TatI	WGTACW	2 cut(s)	263, 1281
TauI	GCSGC	1 cut(s)	1207
TfiI	GAWTC	3 cut(s)	927, 1097, 1216
Tru1I	TTAA	2 cut(s)	561, 948
Tru9I	TTAA	2 cut(s)	561, 948
TscAI	CASTG	4 cut(s)	67, 477, 981, 1107
TseFI	GTSAC	1 cut(s)	958
Tsp45I	GTSAC	1 cut(s)	958
TspDTI	ATGAA	4 cut(s)	31, 845, 901, 1169
TspGWI	ACGGA	2 cut(s)	995, 1286
TspRI	CASTG	4 cut(s)	67, 477, 981, 1107
VpaK11BI	GGWCC	2 cut(s)	416, 446
XceI	RCATGY	4 cut(s)	236, 613, 886, 1111
XmnI	GAANNNNTTC	1 cut(s)	277
XspI	CTAG	4 cut(s)	86, 180, 597, 1329
ZrmI	AGTACT	2 cut(s)	265, 1283
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.