Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06839 AT5G06839 AT5G06839 |
| fragaria_vesca | FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 |
| malus_domestica | MD12G1061900.v1.1 MD14G1062300.v1.1 |
| prunus_persica | Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1 |
| pyrus_communis | pycom12g05460 pycom14g04990 |
| rosa_chinensis | RchiOBHm_Chr3g0480361 |
| rosa_laevigata | RLG00000023490 |
| rosa_roxburghii | Rroxscaffold_6G00401490 |
| rosa_rugosa | Rorug03G0183200 |
| rosa_samantha | Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400 |
| rosa_wichuraiana | Rw3G021070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 649 |
| AciI | CCGC | 3 cut(s) | 670, 1017, 1051 |
| AclI | AACGTT | 1 cut(s) | 1168 |
| AclWI | GGATC | 1 cut(s) | 336 |
| AcoI | YGGCCR | 2 cut(s) | 582, 1386 |
| AcsI | RAATTY | 1 cut(s) | 1497 |
| AcuI | CTGAAG | 2 cut(s) | 366, 1317 |
| AfaI | GTAC | 2 cut(s) | 604, 1547 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 623, 1582 |
| AgsI | TTSAA | 9 cut(s) | 143, 164, 233, 463, 540, 552, 1096, 1322, 1493 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1509 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1412, 1444 |
| Alw21I | GWGCWC | 3 cut(s) | 990, 1011, 1567 |
| Alw26I | GTCTC | 6 cut(s) | 550, 803, 1001, 1286, 1340, 1562 |
| AlwI | GGATC | 1 cut(s) | 336 |
| Ama87I | CYCGRG | 1 cut(s) | 1436 |
| AoxI | GGCC | 5 cut(s) | 129, 449, 582, 1196, 1386 |
| ApoI | RAATTY | 1 cut(s) | 1497 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 467 |
| AspS9I | GGNCC | 6 cut(s) | 367, 626, 677, 707, 721, 1197 |
| AsuHPI | GGTGA | 1 cut(s) | 1475 |
| AvaI | CYCGRG | 1 cut(s) | 1436 |
| AvaII | GGWCC | 5 cut(s) | 367, 626, 677, 707, 721 |
| BalI | TGGCCA | 2 cut(s) | 584, 1388 |
| BanII | GRGCYC | 2 cut(s) | 1011, 1567 |
| Bbv12I | GWGCWC | 3 cut(s) | 990, 1011, 1567 |
| BceAI | ACGGC | 1 cut(s) | 553 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1510, 1544 |
| BcoDI | GTCTC | 6 cut(s) | 550, 803, 1001, 1286, 1340, 1562 |
| BfaI | CTAG | 2 cut(s) | 836, 858 |
| BfmI | CTRYAG | 1 cut(s) | 1410 |
| BfuAI | ACCTGC | 1 cut(s) | 649 |
| BglII | AGATCT | 1 cut(s) | 860 |
| BmcAI | AGTACT | 1 cut(s) | 1547 |
| Bme18I | GGWCC | 5 cut(s) | 367, 626, 677, 707, 721 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1509 |
| BmeT110I | CYCGRG | 1 cut(s) | 1436 |
| BmgT120I | GGNCC | 6 cut(s) | 367, 626, 677, 707, 721, 1197 |
| BmiI | GGNNCC | 3 cut(s) | 678, 709, 723 |
| BmsI | GCATC | 4 cut(s) | 214, 223, 234, 474 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1360, 1392 |
| BpmI | CTGGAG | 2 cut(s) | 118, 1001 |
| Bpu10I | CCTNAGC | 1 cut(s) | 779 |
| BpuEI | CTTGAG | 2 cut(s) | 849, 1296 |
| BsaBI | GATNNNNATC | 1 cut(s) | 204 |
| BsaI | GGTCTC | 2 cut(s) | 550, 1340 |
| BsaJI | CCNNGG | 3 cut(s) | 126, 573, 877 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 595, 625, 876, 906, 1412, 1442 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 623, 1582 |
| Bse118I | RCCGGY | 1 cut(s) | 1485 |
| Bse1I | ACTGG | 1 cut(s) | 135 |
| Bse3DI | GCAATG | 2 cut(s) | 563, 601 |
| Bse8I | GATNNNNATC | 1 cut(s) | 204 |
| BseDI | CCNNGG | 3 cut(s) | 126, 573, 877 |
| BseGI | GGATG | 5 cut(s) | 246, 254, 415, 1188, 1587 |
| BseJI | GATNNNNATC | 1 cut(s) | 204 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 623, 1582 |
| BseMI | GCAATG | 2 cut(s) | 563, 601 |
| BseMII | CTCAG | 7 cut(s) | 491, 725, 761, 1356, 1457, 1533, 1582 |
| BseNI | ACTGG | 1 cut(s) | 135 |
| BseRI | GAGGAG | 9 cut(s) | 45, 48, 51, 603, 606, 621, 897, 912, 998 |
| BseYI | CCCAGC | 1 cut(s) | 272 |
| BshFI | GGCC | 5 cut(s) | 131, 451, 584, 1198, 1388 |
| BsiHKAI | GWGCWC | 3 cut(s) | 990, 1011, 1567 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1436 |
| BsiSI | CCGG | 4 cut(s) | 719, 1037, 1160, 1486 |
| BslFI | GGGAC | 2 cut(s) | 690, 1413 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 623, 1582 |
| BsmAI | GTCTC | 6 cut(s) | 550, 803, 1001, 1286, 1340, 1562 |
| BsmBI | CGTCTC | 2 cut(s) | 1001, 1562 |
| BsmFI | GGGAC | 2 cut(s) | 690, 1413 |
| BsnI | GGCC | 5 cut(s) | 131, 451, 584, 1198, 1388 |
| Bso31I | GGTCTC | 2 cut(s) | 550, 1340 |
| BsoBI | CYCGRG | 1 cut(s) | 1436 |
| Bsp1286I | GDGCHC | 3 cut(s) | 990, 1011, 1567 |
| Bsp143I | GATC | 5 cut(s) | 55, 199, 328, 860, 1600 |
| Bsp19I | CCATGG | 2 cut(s) | 126, 573 |
| BspACI | CCGC | 3 cut(s) | 670, 1017, 1051 |
| BspANI | GGCC | 5 cut(s) | 131, 451, 584, 1198, 1388 |
| BspCNI | CTCAG | 7 cut(s) | 490, 726, 760, 1355, 1458, 1534, 1581 |
| BspLI | GGNNCC | 3 cut(s) | 678, 709, 723 |
| BspMI | ACCTGC | 1 cut(s) | 649 |
| BspPI | GGATC | 1 cut(s) | 336 |
| BspTNI | GGTCTC | 2 cut(s) | 550, 1340 |
| BsrDI | GCAATG | 2 cut(s) | 563, 601 |
| BsrFI | RCCGGY | 1 cut(s) | 1485 |
| BsrI | ACTGG | 1 cut(s) | 135 |
| BssAI | RCCGGY | 1 cut(s) | 1485 |
| BssECI | CCNNGG | 3 cut(s) | 126, 573, 877 |
| BssMI | GATC | 5 cut(s) | 55, 199, 328, 860, 1600 |
| BssT1I | CCWWGG | 3 cut(s) | 126, 573, 877 |
| Bst4CI | ACNGT | 1 cut(s) | 360 |
| Bst6I | CTCTTC | 1 cut(s) | 1148 |
| BstC8I | GCNNGC | 5 cut(s) | 744, 776, 1007, 1476, 1533 |
| BstDSI | CCRYGG | 2 cut(s) | 126, 573 |
| BstEII | GGTNACC | 1 cut(s) | 665 |
| BstF5I | GGATG | 5 cut(s) | 246, 254, 415, 1188, 1587 |
| BstKTI | GATC | 5 cut(s) | 58, 202, 331, 863, 1603 |
| BstMAI | GTCTC | 6 cut(s) | 550, 803, 1001, 1286, 1340, 1562 |
| BstMBI | GATC | 5 cut(s) | 55, 199, 328, 860, 1600 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 92, 211, 220, 493, 985 |
| BstNSI | RCATGY | 1 cut(s) | 491 |
| BstPI | GGTNACC | 1 cut(s) | 665 |
| BstSFI | CTRYAG | 1 cut(s) | 1410 |
| BstX2I | RGATCY | 1 cut(s) | 860 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 580, 1396 |
| BstYI | RGATCY | 1 cut(s) | 860 |
| BsuRI | GGCC | 5 cut(s) | 131, 451, 584, 1198, 1388 |
| BtgI | CCRYGG | 2 cut(s) | 126, 573 |
| BtsCI | GGATG | 5 cut(s) | 246, 254, 415, 1188, 1587 |
| BtsI | GCAGTG | 1 cut(s) | 1026 |
| BtsIMutI | CAGTG | 1 cut(s) | 1026 |
| BveI | ACCTGC | 1 cut(s) | 649 |
| Cac8I | GCNNGC | 5 cut(s) | 744, 776, 1007, 1476, 1533 |
| Cfr10I | RCCGGY | 1 cut(s) | 1485 |
| Cfr13I | GGNCC | 6 cut(s) | 367, 626, 677, 707, 721, 1197 |
| CseI | GACGC | 1 cut(s) | 953 |
| Csp6I | GTAC | 2 cut(s) | 603, 1546 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 280, 315 |
| CviQI | GTAC | 2 cut(s) | 603, 1546 |
| DpnI | GATC | 5 cut(s) | 57, 201, 330, 862, 1602 |
| DpnII | GATC | 5 cut(s) | 55, 199, 328, 860, 1600 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1509 |
| EaeI | YGGCCR | 2 cut(s) | 582, 1386 |
| Eam1104I | CTCTTC | 1 cut(s) | 1148 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1509 |
| EarI | CTCTTC | 1 cut(s) | 1148 |
| Ecl136II | GAGCTC | 2 cut(s) | 1009, 1565 |
| Eco130I | CCWWGG | 3 cut(s) | 126, 573, 877 |
| Eco147I | AGGCCT | 1 cut(s) | 451 |
| Eco24I | GRGCYC | 2 cut(s) | 1011, 1567 |
| Eco31I | GGTCTC | 2 cut(s) | 550, 1340 |
| Eco47I | GGWCC | 5 cut(s) | 367, 626, 677, 707, 721 |
| Eco53kI | GAGCTC | 2 cut(s) | 1009, 1565 |
| Eco57I | CTGAAG | 2 cut(s) | 366, 1317 |
| Eco88I | CYCGRG | 1 cut(s) | 1436 |
| Eco91I | GGTNACC | 1 cut(s) | 665 |
| EcoICRI | GAGCTC | 2 cut(s) | 1009, 1565 |
| EcoO109I | RGGNCCY | 1 cut(s) | 707 |
| EcoO65I | GGTNACC | 1 cut(s) | 665 |
| EcoT14I | CCWWGG | 3 cut(s) | 126, 573, 877 |
| EcoT22I | ATGCAT | 1 cut(s) | 489 |
| EcoT38I | GRGCYC | 2 cut(s) | 1011, 1567 |
| ErhI | CCWWGG | 3 cut(s) | 126, 573, 877 |
| Esp3I | CGTCTC | 2 cut(s) | 1001, 1562 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 88, 120 |
| FaqI | GGGAC | 2 cut(s) | 690, 1413 |
| FauNDI | CATATG | 2 cut(s) | 793, 1404 |
| FokI | GGATG | 5 cut(s) | 241, 253, 402, 1195, 1594 |
| FriOI | GRGCYC | 2 cut(s) | 1011, 1567 |
| FspBI | CTAG | 2 cut(s) | 836, 858 |
| GsaI | CCCAGC | 1 cut(s) | 276 |
| GsuI | CTGGAG | 2 cut(s) | 118, 1001 |
| HaeIII | GGCC | 5 cut(s) | 131, 451, 584, 1198, 1388 |
| HapII | CCGG | 4 cut(s) | 719, 1037, 1160, 1486 |
| HgaI | GACGC | 1 cut(s) | 953 |
| HinfI | GANTC | 6 cut(s) | 229, 730, 1156, 1225, 1361, 1480 |
| HpaII | CCGG | 4 cut(s) | 719, 1037, 1160, 1486 |
| HphI | GGTGA | 1 cut(s) | 1475 |
| Hpy166II | GTNNAC | 1 cut(s) | 1063 |
| Hpy188III | TCNNGA | 7 cut(s) | 143, 404, 441, 624, 1213, 1319, 1436 |
| Hpy8I | GTNNAC | 1 cut(s) | 1063 |
| HpyAV | CCTTC | 5 cut(s) | 390, 630, 698, 732, 923 |
| HpyCH4III | ACNGT | 1 cut(s) | 360 |
| HpyCH4IV | ACGT | 2 cut(s) | 1168, 1206 |
| HpyCH4V | TGCA | 7 cut(s) | 95, 247, 487, 518, 850, 971, 1024 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 92, 211, 220, 493, 985 |
| HpySE526I | ACGT | 2 cut(s) | 1168, 1206 |
| Kzo9I | GATC | 5 cut(s) | 55, 199, 328, 860, 1600 |
| LmnI | GCTCC | 5 cut(s) | 302, 985, 1014, 1246, 1577 |
| LweI | GCATC | 4 cut(s) | 214, 223, 234, 474 |
| MaeI | CTAG | 2 cut(s) | 836, 858 |
| MaeII | ACGT | 2 cut(s) | 1168, 1206 |
| MaeIII | GTNAC | 3 cut(s) | 360, 665, 1272 |
| MalI | GATC | 5 cut(s) | 57, 201, 330, 862, 1602 |
| MboI | GATC | 5 cut(s) | 55, 199, 328, 860, 1600 |
| MboII | GAAGA | 7 cut(s) | 53, 105, 108, 525, 528, 1165, 1310 |
| MfeI | CAATTG | 1 cut(s) | 1536 |
| MflI | RGATCY | 1 cut(s) | 860 |
| MhlI | GDGCHC | 3 cut(s) | 990, 1011, 1567 |
| MlsI | TGGCCA | 2 cut(s) | 584, 1388 |
| MluCI | AATT | 4 cut(s) | 22, 323, 1497, 1536 |
| MluNI | TGGCCA | 2 cut(s) | 584, 1388 |
| MlyI | GAGTC | 2 cut(s) | 724, 1165 |
| MmeI | TCCRAC | 1 cut(s) | 479 |
| Mox20I | TGGCCA | 2 cut(s) | 584, 1388 |
| Mph1103I | ATGCAT | 1 cut(s) | 489 |
| MroXI | GAANNNNTTC | 1 cut(s) | 467 |
| MscI | TGGCCA | 2 cut(s) | 584, 1388 |
| MseI | TTAA | 4 cut(s) | 21, 387, 822, 1241 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1083 |
| Msp20I | TGGCCA | 2 cut(s) | 584, 1388 |
| MspA1I | CMGCKG | 1 cut(s) | 515 |
| MspI | CCGG | 4 cut(s) | 719, 1037, 1160, 1486 |
| MunI | CAATTG | 1 cut(s) | 1536 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 92, 211, 220, 493, 985 |
| NcoI | CCATGG | 2 cut(s) | 126, 573 |
| NdeI | CATATG | 2 cut(s) | 793, 1404 |
| NdeII | GATC | 5 cut(s) | 55, 199, 328, 860, 1600 |
| NlaIV | GGNNCC | 3 cut(s) | 678, 709, 723 |
| NmuCI | GTSAC | 1 cut(s) | 360 |
| NsiI | ATGCAT | 1 cut(s) | 489 |
| NspI | RCATGY | 1 cut(s) | 491 |
| PaeR7I | CTCGAG | 1 cut(s) | 1436 |
| PceI | AGGCCT | 1 cut(s) | 451 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1443 |
| PdmI | GAANNNNTTC | 1 cut(s) | 467 |
| PfeI | GAWTC | 4 cut(s) | 229, 1225, 1361, 1480 |
| PleI | GAGTC | 2 cut(s) | 724, 1164 |
| PpsI | GAGTC | 2 cut(s) | 724, 1164 |
| PpuMI | RGGWCCY | 1 cut(s) | 707 |
| Psp124BI | GAGCTC | 2 cut(s) | 1011, 1567 |
| Psp1406I | AACGTT | 1 cut(s) | 1168 |
| Psp5II | RGGWCCY | 1 cut(s) | 707 |
| PspEI | GGTNACC | 1 cut(s) | 665 |
| PspFI | CCCAGC | 1 cut(s) | 272 |
| PspN4I | GGNNCC | 3 cut(s) | 678, 709, 723 |
| PspPI | GGNCC | 6 cut(s) | 367, 626, 677, 707, 721, 1197 |
| PspPPI | RGGWCCY | 1 cut(s) | 707 |
| PsuI | RGATCY | 1 cut(s) | 860 |
| PvuII | CAGCTG | 1 cut(s) | 515 |
| RsaI | GTAC | 2 cut(s) | 604, 1547 |
| RsaNI | GTAC | 2 cut(s) | 603, 1546 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1083 |
| SacI | GAGCTC | 2 cut(s) | 1011, 1567 |
| SaqAI | TTAA | 4 cut(s) | 21, 387, 822, 1241 |
| Sau3AI | GATC | 5 cut(s) | 55, 199, 328, 860, 1600 |
| Sau96I | GGNCC | 6 cut(s) | 367, 626, 677, 707, 721, 1197 |
| ScaI | AGTACT | 1 cut(s) | 1547 |
| SchI | GAGTC | 2 cut(s) | 724, 1165 |
| SduI | GDGCHC | 3 cut(s) | 990, 1011, 1567 |
| SfaNI | GCATC | 4 cut(s) | 214, 223, 234, 474 |
| SfcI | CTRYAG | 1 cut(s) | 1410 |
| Sfr274I | CTCGAG | 1 cut(s) | 1436 |
| SinI | GGWCC | 5 cut(s) | 367, 626, 677, 707, 721 |
| SlaI | CTCGAG | 1 cut(s) | 1436 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1083 |
| SmlI | CTYRAG | 3 cut(s) | 864, 1311, 1436 |
| SmoI | CTYRAG | 3 cut(s) | 864, 1311, 1436 |
| Sse9I | AATT | 4 cut(s) | 22, 323, 1497, 1536 |
| SseBI | AGGCCT | 1 cut(s) | 451 |
| SsiI | CCGC | 3 cut(s) | 670, 1017, 1051 |
| SspI | AATATT | 2 cut(s) | 265, 466 |
| SspMI | CTAG | 2 cut(s) | 836, 858 |
| SstI | GAGCTC | 2 cut(s) | 1011, 1567 |
| StuI | AGGCCT | 1 cut(s) | 451 |
| StyI | CCWWGG | 3 cut(s) | 126, 573, 877 |
| TaaI | ACNGT | 1 cut(s) | 360 |
| TaiI | ACGT | 2 cut(s) | 1171, 1209 |
| TaqI | TCGA | 5 cut(s) | 492, 957, 1233, 1437, 1594 |
| TaqII | GACCGA | 1 cut(s) | 1136 |
| TasI | AATT | 4 cut(s) | 22, 323, 1497, 1536 |
| TatI | WGTACW | 2 cut(s) | 602, 1545 |
| TauI | GCSGC | 2 cut(s) | 1019, 1054 |
| TfiI | GAWTC | 4 cut(s) | 229, 1225, 1361, 1480 |
| Tru1I | TTAA | 4 cut(s) | 21, 387, 822, 1241 |
| Tru9I | TTAA | 4 cut(s) | 21, 387, 822, 1241 |
| TscAI | CASTG | 1 cut(s) | 1026 |
| TseFI | GTSAC | 1 cut(s) | 360 |
| Tsp45I | GTSAC | 1 cut(s) | 360 |
| TspDTI | ATGAA | 6 cut(s) | 271, 386, 1101, 1121, 1353, 1433 |
| TspGWI | ACGGA | 1 cut(s) | 1259 |
| TspRI | CASTG | 1 cut(s) | 1026 |
| VpaK11BI | GGWCC | 5 cut(s) | 367, 626, 677, 707, 721 |
| XapI | RAATTY | 1 cut(s) | 1497 |
| XceI | RCATGY | 1 cut(s) | 491 |
| XhoI | CTCGAG | 1 cut(s) | 1436 |
| XmnI | GAANNNNTTC | 1 cut(s) | 467 |
| XspI | CTAG | 2 cut(s) | 836, 858 |
| ZrmI | AGTACT | 1 cut(s) | 1547 |
| Zsp2I | ATGCAT | 1 cut(s) | 489 |