MD12G1061900.v1.1
BZIP Family

Transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
7240182 .. 7249067
8886 bp
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UTR
Exon/CDS
Intron
MD12G1061900.v1.1.491

Sequence Viewer

Length: 1611 bp
ATGGGGTTTCTAAGAGGTTTTAATTTTGGAGGAGGAGGAGAAGAAAATAAAGGAGATCAGCAACTCTTAGAAACAAAGCTCTTAGCTTCTTGTGCAAGACCTACTTCTACATCTTCTTCTTTTCCCATGGCCTCCAGTATTCAAGAAAATAGCAATCAACTTGAACACCAACAACAACAACATCATCATCAAATACAAGATCAGCATCATCAGCATCAGCAGCAGCAGATTCAATATGGGATGATGCAATCATCATCCTCCAATATTCCTGCTGGGAACTTCATATCAAACAAAGATGGTGGAGCTGCTTATGATGTGGGGGAATTGGATCAAGCTCTTTTTCTCTACCTTGATGGACAGTCACAGGACCATCACAACCCTTCAGTTAATCATGTTCATCATCAAGACCAACGACATCCCCATCAAAATAACTCGTCATCTGGAATGAGGCCTCCAACTTTGAATATTTTCCCATCTCAGCCGATGCATGTCGAGCCATCATCAACCCAAGCAGCTGCAACGGGATTAGTTTCTTCTTCAAGTAGTGGTTCAAAGAGACCATCATTGCCGTCCATGGAGTTGGCCAACCCACGCAATGATTGTACTGCCCCTCCTCCTCCTTCTGGACCTCCTCAACAACCTGCCAAAGCTATCAAGCGTGAGGGTAACCGCAAGGGACCAACTACATCAAGTTCAGAGCAAGAAGGACCCAAAACGCCGGACCCTAAGACTCTGAGAAGGCTTGCTCAGAATAGAGAAGCAGCCAGAAAAAGCAGGCTTAGGAAAAAGGCATATGTTCAGCAGTTAGAGACAAGTAGGATTAAGCTAACTCAACTAGAACAAGAGCTGCAAAGAGCTAGATCTCAAGGTATGTTCCTTGGAGGAGGACTTGTAGGAGGAGAGCAACAAAACCTTCCTGTTGGTATCAACAACATTAGCTCGGACGCTGCTGTTTTCGACATGGAGTATGCAAGGTGGCTGGAGGAGCACCATCGTCTCATGTGCGAGCTCCGAGCCGCAGTGCAAGAGCATTTGCCGGAGAATGAGCTGCGGCTTTTTGTGGACAACTGCTTGGCACATTATGATGAAGTGTTGAACCTCAAAGGCATGGTTGCCAAGACCGATGTGTTTCATATTGTTTCTGGTATGTGGAAGAGTCCGGCTGAACGTTGCTTTATGTGGATGGGTGGATTTCGGCCCTCTGACGTTATCAAGATTATTCTGAATCAAATCGAGCCATTAACGGAGCAGCAACTATTGGGTATTTGTGGGTTACAACAATCCACACAGGAGACTGAAGAAGCTCTATCTCAAGGTCTTGAAGCTCTCAATCAATCTCTCTCAGAGACCATAACCTCTGATTCATTGAGCTGCCCTCCCAACATGGCCAACTACATGGGACATATGGCTATAGCCATGAACAAGCTCTCCACTCTCGAGGGCTTCGTTATACAGGCTGATAATCTGAGGCAGCAGGCGATTCACCGGCTTCAACAAATTCTGACGACCCGTCAAGCAGCGAGGTGTTTGCTGGCAATTGCTGAGTACTTCCATCGTCTCCGAGCTCTCAGCTCCCTTTGGATGGCTCGTCCTCGACAAGATCAGTCATAA

Protein Analysis

537

Amino Acids

59.64

Weight (kDa)

6.65

Isoelectric Point (pI)

69.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 240 - 284 3.7e-07 Basic region leucine zipper
bZIP_1 PF00170 243 - 283 4.1e-08 bZIP transcription factor
DOG1 PF14144 334 - 408 9.9e-31 Seed dormancy control
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 649
AciI CCGC 3 cut(s) 670, 1017, 1051
AclI AACGTT 1 cut(s) 1168
AclWI GGATC 1 cut(s) 336
AcoI YGGCCR 2 cut(s) 582, 1386
AcsI RAATTY 1 cut(s) 1497
AcuI CTGAAG 2 cut(s) 366, 1317
AfaI GTAC 2 cut(s) 604, 1547
AfiI CCNNNNNNNGG 2 cut(s) 623, 1582
AgsI TTSAA 9 cut(s) 143, 164, 233, 463, 540, 552, 1096, 1322, 1493
AhdI GACNNNNNGTC 1 cut(s) 1509
AloI GAACNNNNNNTCC 2 cut(s) 1412, 1444
Alw21I GWGCWC 3 cut(s) 990, 1011, 1567
Alw26I GTCTC 6 cut(s) 550, 803, 1001, 1286, 1340, 1562
AlwI GGATC 1 cut(s) 336
Ama87I CYCGRG 1 cut(s) 1436
AoxI GGCC 5 cut(s) 129, 449, 582, 1196, 1386
ApoI RAATTY 1 cut(s) 1497
Asp700I GAANNNNTTC 1 cut(s) 467
AspS9I GGNCC 6 cut(s) 367, 626, 677, 707, 721, 1197
AsuHPI GGTGA 1 cut(s) 1475
AvaI CYCGRG 1 cut(s) 1436
AvaII GGWCC 5 cut(s) 367, 626, 677, 707, 721
BalI TGGCCA 2 cut(s) 584, 1388
BanII GRGCYC 2 cut(s) 1011, 1567
Bbv12I GWGCWC 3 cut(s) 990, 1011, 1567
BceAI ACGGC 1 cut(s) 553
BcgI CGANNNNNNTGC 2 cut(s) 1510, 1544
BcoDI GTCTC 6 cut(s) 550, 803, 1001, 1286, 1340, 1562
BfaI CTAG 2 cut(s) 836, 858
BfmI CTRYAG 1 cut(s) 1410
BfuAI ACCTGC 1 cut(s) 649
BglII AGATCT 1 cut(s) 860
BmcAI AGTACT 1 cut(s) 1547
Bme18I GGWCC 5 cut(s) 367, 626, 677, 707, 721
BmeRI GACNNNNNGTC 1 cut(s) 1509
BmeT110I CYCGRG 1 cut(s) 1436
BmgT120I GGNCC 6 cut(s) 367, 626, 677, 707, 721, 1197
BmiI GGNNCC 3 cut(s) 678, 709, 723
BmsI GCATC 4 cut(s) 214, 223, 234, 474
BplI GAGNNNNNCTC 2 cut(s) 1360, 1392
BpmI CTGGAG 2 cut(s) 118, 1001
Bpu10I CCTNAGC 1 cut(s) 779
BpuEI CTTGAG 2 cut(s) 849, 1296
BsaBI GATNNNNATC 1 cut(s) 204
BsaI GGTCTC 2 cut(s) 550, 1340
BsaJI CCNNGG 3 cut(s) 126, 573, 877
BsaXI ACNNNNNCTCC 6 cut(s) 595, 625, 876, 906, 1412, 1442
Bsc4I CCNNNNNNNGG 2 cut(s) 623, 1582
Bse118I RCCGGY 1 cut(s) 1485
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 2 cut(s) 563, 601
Bse8I GATNNNNATC 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 126, 573, 877
BseGI GGATG 5 cut(s) 246, 254, 415, 1188, 1587
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 2 cut(s) 623, 1582
BseMI GCAATG 2 cut(s) 563, 601
BseMII CTCAG 7 cut(s) 491, 725, 761, 1356, 1457, 1533, 1582
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 9 cut(s) 45, 48, 51, 603, 606, 621, 897, 912, 998
BseYI CCCAGC 1 cut(s) 272
BshFI GGCC 5 cut(s) 131, 451, 584, 1198, 1388
BsiHKAI GWGCWC 3 cut(s) 990, 1011, 1567
BsiHKCI CYCGRG 1 cut(s) 1436
BsiSI CCGG 4 cut(s) 719, 1037, 1160, 1486
BslFI GGGAC 2 cut(s) 690, 1413
BslI CCNNNNNNNGG 2 cut(s) 623, 1582
BsmAI GTCTC 6 cut(s) 550, 803, 1001, 1286, 1340, 1562
BsmBI CGTCTC 2 cut(s) 1001, 1562
BsmFI GGGAC 2 cut(s) 690, 1413
BsnI GGCC 5 cut(s) 131, 451, 584, 1198, 1388
Bso31I GGTCTC 2 cut(s) 550, 1340
BsoBI CYCGRG 1 cut(s) 1436
Bsp1286I GDGCHC 3 cut(s) 990, 1011, 1567
Bsp143I GATC 5 cut(s) 55, 199, 328, 860, 1600
Bsp19I CCATGG 2 cut(s) 126, 573
BspACI CCGC 3 cut(s) 670, 1017, 1051
BspANI GGCC 5 cut(s) 131, 451, 584, 1198, 1388
BspCNI CTCAG 7 cut(s) 490, 726, 760, 1355, 1458, 1534, 1581
BspLI GGNNCC 3 cut(s) 678, 709, 723
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 1 cut(s) 336
BspTNI GGTCTC 2 cut(s) 550, 1340
BsrDI GCAATG 2 cut(s) 563, 601
BsrFI RCCGGY 1 cut(s) 1485
BsrI ACTGG 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 1485
BssECI CCNNGG 3 cut(s) 126, 573, 877
BssMI GATC 5 cut(s) 55, 199, 328, 860, 1600
BssT1I CCWWGG 3 cut(s) 126, 573, 877
Bst4CI ACNGT 1 cut(s) 360
Bst6I CTCTTC 1 cut(s) 1148
BstC8I GCNNGC 5 cut(s) 744, 776, 1007, 1476, 1533
BstDSI CCRYGG 2 cut(s) 126, 573
BstEII GGTNACC 1 cut(s) 665
BstF5I GGATG 5 cut(s) 246, 254, 415, 1188, 1587
BstKTI GATC 5 cut(s) 58, 202, 331, 863, 1603
BstMAI GTCTC 6 cut(s) 550, 803, 1001, 1286, 1340, 1562
BstMBI GATC 5 cut(s) 55, 199, 328, 860, 1600
BstMWI GCNNNNNNNGC 5 cut(s) 92, 211, 220, 493, 985
BstNSI RCATGY 1 cut(s) 491
BstPI GGTNACC 1 cut(s) 665
BstSFI CTRYAG 1 cut(s) 1410
BstX2I RGATCY 1 cut(s) 860
BstXI CCANNNNNNTGG 2 cut(s) 580, 1396
BstYI RGATCY 1 cut(s) 860
BsuRI GGCC 5 cut(s) 131, 451, 584, 1198, 1388
BtgI CCRYGG 2 cut(s) 126, 573
BtsCI GGATG 5 cut(s) 246, 254, 415, 1188, 1587
BtsI GCAGTG 1 cut(s) 1026
BtsIMutI CAGTG 1 cut(s) 1026
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 5 cut(s) 744, 776, 1007, 1476, 1533
Cfr10I RCCGGY 1 cut(s) 1485
Cfr13I GGNCC 6 cut(s) 367, 626, 677, 707, 721, 1197
CseI GACGC 1 cut(s) 953
Csp6I GTAC 2 cut(s) 603, 1546
CspCI CAANNNNNGTGG 2 cut(s) 280, 315
CviQI GTAC 2 cut(s) 603, 1546
DpnI GATC 5 cut(s) 57, 201, 330, 862, 1602
DpnII GATC 5 cut(s) 55, 199, 328, 860, 1600
DriI GACNNNNNGTC 1 cut(s) 1509
EaeI YGGCCR 2 cut(s) 582, 1386
Eam1104I CTCTTC 1 cut(s) 1148
Eam1105I GACNNNNNGTC 1 cut(s) 1509
EarI CTCTTC 1 cut(s) 1148
Ecl136II GAGCTC 2 cut(s) 1009, 1565
Eco130I CCWWGG 3 cut(s) 126, 573, 877
Eco147I AGGCCT 1 cut(s) 451
Eco24I GRGCYC 2 cut(s) 1011, 1567
Eco31I GGTCTC 2 cut(s) 550, 1340
Eco47I GGWCC 5 cut(s) 367, 626, 677, 707, 721
Eco53kI GAGCTC 2 cut(s) 1009, 1565
Eco57I CTGAAG 2 cut(s) 366, 1317
Eco88I CYCGRG 1 cut(s) 1436
Eco91I GGTNACC 1 cut(s) 665
EcoICRI GAGCTC 2 cut(s) 1009, 1565
EcoO109I RGGNCCY 1 cut(s) 707
EcoO65I GGTNACC 1 cut(s) 665
EcoT14I CCWWGG 3 cut(s) 126, 573, 877
EcoT22I ATGCAT 1 cut(s) 489
EcoT38I GRGCYC 2 cut(s) 1011, 1567
ErhI CCWWGG 3 cut(s) 126, 573, 877
Esp3I CGTCTC 2 cut(s) 1001, 1562
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FaqI GGGAC 2 cut(s) 690, 1413
FauNDI CATATG 2 cut(s) 793, 1404
FokI GGATG 5 cut(s) 241, 253, 402, 1195, 1594
FriOI GRGCYC 2 cut(s) 1011, 1567
FspBI CTAG 2 cut(s) 836, 858
GsaI CCCAGC 1 cut(s) 276
GsuI CTGGAG 2 cut(s) 118, 1001
HaeIII GGCC 5 cut(s) 131, 451, 584, 1198, 1388
HapII CCGG 4 cut(s) 719, 1037, 1160, 1486
HgaI GACGC 1 cut(s) 953
HinfI GANTC 6 cut(s) 229, 730, 1156, 1225, 1361, 1480
HpaII CCGG 4 cut(s) 719, 1037, 1160, 1486
HphI GGTGA 1 cut(s) 1475
Hpy166II GTNNAC 1 cut(s) 1063
Hpy188III TCNNGA 7 cut(s) 143, 404, 441, 624, 1213, 1319, 1436
Hpy8I GTNNAC 1 cut(s) 1063
HpyAV CCTTC 5 cut(s) 390, 630, 698, 732, 923
HpyCH4III ACNGT 1 cut(s) 360
HpyCH4IV ACGT 2 cut(s) 1168, 1206
HpyCH4V TGCA 7 cut(s) 95, 247, 487, 518, 850, 971, 1024
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 211, 220, 493, 985
HpySE526I ACGT 2 cut(s) 1168, 1206
Kzo9I GATC 5 cut(s) 55, 199, 328, 860, 1600
LmnI GCTCC 5 cut(s) 302, 985, 1014, 1246, 1577
LweI GCATC 4 cut(s) 214, 223, 234, 474
MaeI CTAG 2 cut(s) 836, 858
MaeII ACGT 2 cut(s) 1168, 1206
MaeIII GTNAC 3 cut(s) 360, 665, 1272
MalI GATC 5 cut(s) 57, 201, 330, 862, 1602
MboI GATC 5 cut(s) 55, 199, 328, 860, 1600
MboII GAAGA 7 cut(s) 53, 105, 108, 525, 528, 1165, 1310
MfeI CAATTG 1 cut(s) 1536
MflI RGATCY 1 cut(s) 860
MhlI GDGCHC 3 cut(s) 990, 1011, 1567
MlsI TGGCCA 2 cut(s) 584, 1388
MluCI AATT 4 cut(s) 22, 323, 1497, 1536
MluNI TGGCCA 2 cut(s) 584, 1388
MlyI GAGTC 2 cut(s) 724, 1165
MmeI TCCRAC 1 cut(s) 479
Mox20I TGGCCA 2 cut(s) 584, 1388
Mph1103I ATGCAT 1 cut(s) 489
MroXI GAANNNNTTC 1 cut(s) 467
MscI TGGCCA 2 cut(s) 584, 1388
MseI TTAA 4 cut(s) 21, 387, 822, 1241
MslI CAYNNNNRTG 1 cut(s) 1083
Msp20I TGGCCA 2 cut(s) 584, 1388
MspA1I CMGCKG 1 cut(s) 515
MspI CCGG 4 cut(s) 719, 1037, 1160, 1486
MunI CAATTG 1 cut(s) 1536
MwoI GCNNNNNNNGC 5 cut(s) 92, 211, 220, 493, 985
NcoI CCATGG 2 cut(s) 126, 573
NdeI CATATG 2 cut(s) 793, 1404
NdeII GATC 5 cut(s) 55, 199, 328, 860, 1600
NlaIV GGNNCC 3 cut(s) 678, 709, 723
NmuCI GTSAC 1 cut(s) 360
NsiI ATGCAT 1 cut(s) 489
NspI RCATGY 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 1436
PceI AGGCCT 1 cut(s) 451
PcsI WCGNNNNNNNCGW 1 cut(s) 1443
PdmI GAANNNNTTC 1 cut(s) 467
PfeI GAWTC 4 cut(s) 229, 1225, 1361, 1480
PleI GAGTC 2 cut(s) 724, 1164
PpsI GAGTC 2 cut(s) 724, 1164
PpuMI RGGWCCY 1 cut(s) 707
Psp124BI GAGCTC 2 cut(s) 1011, 1567
Psp1406I AACGTT 1 cut(s) 1168
Psp5II RGGWCCY 1 cut(s) 707
PspEI GGTNACC 1 cut(s) 665
PspFI CCCAGC 1 cut(s) 272
PspN4I GGNNCC 3 cut(s) 678, 709, 723
PspPI GGNCC 6 cut(s) 367, 626, 677, 707, 721, 1197
PspPPI RGGWCCY 1 cut(s) 707
PsuI RGATCY 1 cut(s) 860
PvuII CAGCTG 1 cut(s) 515
RsaI GTAC 2 cut(s) 604, 1547
RsaNI GTAC 2 cut(s) 603, 1546
RseI CAYNNNNRTG 1 cut(s) 1083
SacI GAGCTC 2 cut(s) 1011, 1567
SaqAI TTAA 4 cut(s) 21, 387, 822, 1241
Sau3AI GATC 5 cut(s) 55, 199, 328, 860, 1600
Sau96I GGNCC 6 cut(s) 367, 626, 677, 707, 721, 1197
ScaI AGTACT 1 cut(s) 1547
SchI GAGTC 2 cut(s) 724, 1165
SduI GDGCHC 3 cut(s) 990, 1011, 1567
SfaNI GCATC 4 cut(s) 214, 223, 234, 474
SfcI CTRYAG 1 cut(s) 1410
Sfr274I CTCGAG 1 cut(s) 1436
SinI GGWCC 5 cut(s) 367, 626, 677, 707, 721
SlaI CTCGAG 1 cut(s) 1436
SmiMI CAYNNNNRTG 1 cut(s) 1083
SmlI CTYRAG 3 cut(s) 864, 1311, 1436
SmoI CTYRAG 3 cut(s) 864, 1311, 1436
Sse9I AATT 4 cut(s) 22, 323, 1497, 1536
SseBI AGGCCT 1 cut(s) 451
SsiI CCGC 3 cut(s) 670, 1017, 1051
SspI AATATT 2 cut(s) 265, 466
SspMI CTAG 2 cut(s) 836, 858
SstI GAGCTC 2 cut(s) 1011, 1567
StuI AGGCCT 1 cut(s) 451
StyI CCWWGG 3 cut(s) 126, 573, 877
TaaI ACNGT 1 cut(s) 360
TaiI ACGT 2 cut(s) 1171, 1209
TaqI TCGA 5 cut(s) 492, 957, 1233, 1437, 1594
TaqII GACCGA 1 cut(s) 1136
TasI AATT 4 cut(s) 22, 323, 1497, 1536
TatI WGTACW 2 cut(s) 602, 1545
TauI GCSGC 2 cut(s) 1019, 1054
TfiI GAWTC 4 cut(s) 229, 1225, 1361, 1480
Tru1I TTAA 4 cut(s) 21, 387, 822, 1241
Tru9I TTAA 4 cut(s) 21, 387, 822, 1241
TscAI CASTG 1 cut(s) 1026
TseFI GTSAC 1 cut(s) 360
Tsp45I GTSAC 1 cut(s) 360
TspDTI ATGAA 6 cut(s) 271, 386, 1101, 1121, 1353, 1433
TspGWI ACGGA 1 cut(s) 1259
TspRI CASTG 1 cut(s) 1026
VpaK11BI GGWCC 5 cut(s) 367, 626, 677, 707, 721
XapI RAATTY 1 cut(s) 1497
XceI RCATGY 1 cut(s) 491
XhoI CTCGAG 1 cut(s) 1436
XmnI GAANNNNTTC 1 cut(s) 467
XspI CTAG 2 cut(s) 836, 858
ZrmI AGTACT 1 cut(s) 1547
Zsp2I ATGCAT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.