Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0009463

Physical Location & Seq

Genomic Coordinates Forward (+)

25887246 .. 25892831

Gene Structure 5586 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG264500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGATGCAGTCATCATCCTCCAACATCCCATCTGGGAACTTCATGGGAAGCAGCAAAGACAGTGGAGCATATGATCTGGGCGAGCTAGATCAAGCCCTTTTCCTCTACCTTGATGGACAACAAGATCATCATCATCATCATCAAGCTCCTCATCACGTTCAAGACCAACGACATCAAACTAGCTCAGGAATGAGGCCTCCAACTTTGAACATCTTTCCATCTGAGCCTATGCATGTAGAGCCATCATCAACCAAAGGTGTTAGTACTGCAGGAATAGTTTCTTCTGCAACGAGTGGTTCAAAGAGACCATCAGAGCCGTCCATGGAGTTGGCCAACCCACGCAAAATTGATGCTGCTGCTCCATCTGGACTTCCTGAACCTGCCAAGACTATCAAGCGTGAGGGTAACCGCAAGGGACCAACTACATCAAGTTCAGAGCAAGAAGGACCAAAAACACCAGACCCTAAGACACTGAGAAGGCTTGCTCAGAATAGAGAGGCAGCCAGGAAAAGCAGGCTCAGAAAAAAGGCATATGTTCAGCAGTTAGAGTCGAGTAGGATTAAGCTCACCCAGCTGGAACAAGAGCTGCAAAGAGCTAGAACCCAGGGCATGTTCTTTGGAGGTGGTCTTGTAGGAGCAGAACAAGGTGTTCCAGTTGGTATAAACAACATTAGCTCAGACGCTGCAGTTTTCGACATGGAGTATGCTCGTTGGCTTGAGGAGCACCACCGCCTGATGTGTGAGCTCCGAGCAGCTGTGCAAGAGCATTTGCCAGAGAATGAGCTGAGGCTGTTTGTGGACAACTGTTTGGCACACTATGATGAGGTGATGAACCTCAAGAGCATGGTGGCCAAAACCGATGTGTTTCACATTGTTTCAGGCATGTGGAAGACTCCAGCTGAAAGATGCTTCATGTGGATGGGTGGATTCCGGCCCTCTGAGGTCATTAAGATTATTGTGACCCAAATCGAGCCACTGACGGAGCAGCAACTAATGGCTATTTGTTCGTTACAACAATCCACAAGTGAAGCTGAAGACGCTCTCACCCAAGGGCTTGAAGCTCTGAACCAGTCTCTCTCAGACACCATAGCTTCCGATTCACTGAGCATGCCCCCTAACATGGCTAACTACATGGGTCAGATGGCTTTAGCCATGAACAAGCTCTCTACTCTTGAAGGGTTCGTCAGACAGGCTGATAATCTGAGGCTGCAGACGATTCACCGGCTGCAAACACTCCTGACCACTCGCCAATCAGCGCGGTGTTTGCTGGCAATCGCCGAGTACTTCCATCGCCTCCGAGCTCTCAGCTCTCTCTGGATGGGCCGTCCTAGACAAGATCATCAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

DOG1 bZIP_1 bZIP_2

Protein Analysis

449

Amino Acids

49.98

Weight (kDa)

7.0

Isoelectric Point (pI)

62.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	153 - 197	1.7e-07	Basic region leucine zipper
bZIP_1	PF00170	156 - 196	3.1e-08	bZIP transcription factor
DOG1	PF14144	246 - 320	1.6e-32	Seed dormancy control

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06839 AT5G06839 AT5G06839
fragaria_vesca	FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750
malus_domestica	MD12G1061900.v1.1 MD14G1062300.v1.1
prunus_persica	Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1
pyrus_communis	pycom12g05460 pycom14g04990
rosa_chinensis	RchiOBHm_Chr3g0480361
rosa_laevigata	RLG00000023490
rosa_roxburghii	Rroxscaffold_6G00401490
rosa_rugosa	Rorug03G0183200
rosa_samantha	Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400
rosa_wichuraiana	Rw3G021070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AccII	CGCG	1 cut(s)	1258
AciI	CCGC	3 cut(s)	409, 730, 1258
AcoI	YGGCCR	2 cut(s)	330, 849
AcuI	CTGAAG	1 cut(s)	1053
AfaI	GTAC	2 cut(s)	265, 1283
AfiI	CCNNNNNNNGG	1 cut(s)	1120
AgsI	TTSAA	5 cut(s)	161, 208, 300, 1058, 1175
AjnI	CCWGG	2 cut(s)	503, 603
Alw21I	GWGCWC	3 cut(s)	726, 747, 1303
Alw26I	GTCTC	2 cut(s)	298, 1077
AlwNI	CAGNNNCTG	1 cut(s)	683
AoxI	GGCC	5 cut(s)	194, 330, 849, 932, 1321
Asp700I	GAANNNNTTC	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	1258
AspS9I	GGNCC	4 cut(s)	416, 446, 933, 1321
AsuHPI	GGTGA	4 cut(s)	559, 838, 1036, 1211
AvaII	GGWCC	2 cut(s)	416, 446
BalI	TGGCCA	2 cut(s)	332, 851
BanII	GRGCYC	2 cut(s)	747, 1303
BbsI	GAAGAC	2 cut(s)	896, 1041
Bbv12I	GWGCWC	3 cut(s)	726, 747, 1303
BbvCI	CCTCAGC	1 cut(s)	785
BceAI	ACGGC	2 cut(s)	301, 1308
BciT130I	CCWGG	2 cut(s)	505, 605
BcoDI	GTCTC	2 cut(s)	298, 1077
BfaI	CTAG	4 cut(s)	86, 180, 597, 1329
BfmI	CTRYAG	3 cut(s)	267, 684, 1208
BfuAI	ACCTGC	1 cut(s)	388
BmcAI	AGTACT	2 cut(s)	265, 1283
Bme1390I	CCNGG	2 cut(s)	505, 605
Bme18I	GGWCC	2 cut(s)	416, 446
BmgT120I	GGNCC	4 cut(s)	416, 446, 933, 1321
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	2 cut(s)	505, 605
BmsI	GCATC	2 cut(s)	340, 896
BpiI	GAAGAC	2 cut(s)	896, 1041
BpmI	CTGGAG	1 cut(s)	879
Bpu10I	CCTNAGC	2 cut(s)	184, 785
BpuEI	CTTGAG	2 cut(s)	737, 821
BsaBI	GATNNNNATC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	298
BsaJI	CCNNGG	4 cut(s)	321, 603, 604, 1048
Bsc4I	CCNNNNNNNGG	1 cut(s)	1120
Bse118I	RCCGGY	1 cut(s)	1221
Bse1I	ACTGG	2 cut(s)	653, 1069
Bse8I	GATNNNNATC	1 cut(s)	129
BseBI	CCWGG	2 cut(s)	505, 605
BseDI	CCNNGG	4 cut(s)	321, 603, 604, 1048
BseGI	GGATG	4 cut(s)	14, 24, 924, 1323
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	1120
BseNI	ACTGG	2 cut(s)	653, 1069
BseRI	GAGGAG	2 cut(s)	138, 734
BseYI	CCCAGC	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	1258
BshFI	GGCC	5 cut(s)	196, 332, 851, 934, 1323
BsiHKAI	GWGCWC	3 cut(s)	726, 747, 1303
BsiSI	CCGG	2 cut(s)	931, 1222
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	1120
BsmAI	GTCTC	2 cut(s)	298, 1077
BsmFI	GGGAC	1 cut(s)	429
BsnI	GGCC	5 cut(s)	196, 332, 851, 934, 1323
Bso31I	GGTCTC	1 cut(s)	298
Bsp1286I	GDGCHC	3 cut(s)	726, 747, 1303
Bsp143I	GATC	4 cut(s)	73, 88, 124, 1336
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	3 cut(s)	409, 730, 1258
BspANI	GGCC	5 cut(s)	196, 332, 851, 934, 1323
BspFNI	CGCG	1 cut(s)	1258
BspLI	GGNNCC	1 cut(s)	417
BspMAI	CTGCAG	3 cut(s)	271, 688, 1212
BspMI	ACCTGC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	298
BsrFI	RCCGGY	1 cut(s)	1221
BsrI	ACTGG	2 cut(s)	653, 1069
BssAI	RCCGGY	1 cut(s)	1221
BssECI	CCNNGG	4 cut(s)	321, 603, 604, 1048
BssMI	GATC	4 cut(s)	73, 88, 124, 1336
BssT1I	CCWWGG	2 cut(s)	321, 1048
Bst2UI	CCWGG	2 cut(s)	505, 605
Bst4CI	ACNGT	2 cut(s)	62, 806
BstC8I	GCNNGC	5 cut(s)	83, 483, 515, 1109, 1269
BstDSI	CCRYGG	1 cut(s)	321
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	4 cut(s)	14, 24, 924, 1323
BstFNI	CGCG	1 cut(s)	1258
BstHHI	GCGC	1 cut(s)	1258
BstKTI	GATC	4 cut(s)	76, 91, 127, 1339
BstMAI	GTCTC	2 cut(s)	298, 1077
BstMBI	GATC	4 cut(s)	73, 88, 124, 1336
BstMWI	GCNNNNNNNGC	5 cut(s)	238, 571, 721, 1037, 1264
BstNI	CCWGG	2 cut(s)	505, 605
BstNSI	RCATGY	4 cut(s)	236, 613, 886, 1111
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	503, 603
BstSFI	CTRYAG	3 cut(s)	267, 684, 1208
BstUI	CGCG	1 cut(s)	1258
BstV2I	GAAGAC	2 cut(s)	896, 1041
BstXI	CCANNNNNNTGG	1 cut(s)	328
BsuRI	GGCC	5 cut(s)	196, 332, 851, 934, 1323
BtgI	CCRYGG	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	1274
BtsCI	GGATG	4 cut(s)	14, 24, 924, 1323
BtsIMutI	CAGTG	4 cut(s)	67, 470, 974, 1100
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	5 cut(s)	83, 483, 515, 1109, 1269
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	1 cut(s)	1258
Cfr10I	RCCGGY	1 cut(s)	1221
Cfr13I	GGNCC	4 cut(s)	416, 446, 933, 1321
CseI	GACGC	2 cut(s)	689, 1046
Csp6I	GTAC	2 cut(s)	264, 1282
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviQI	GTAC	2 cut(s)	264, 1282
DpnI	GATC	4 cut(s)	75, 90, 126, 1338
DpnII	GATC	4 cut(s)	73, 88, 124, 1336
EaeI	YGGCCR	2 cut(s)	330, 849
Ecl136II	GAGCTC	2 cut(s)	745, 1301
Eco130I	CCWWGG	2 cut(s)	321, 1048
Eco147I	AGGCCT	1 cut(s)	196
Eco24I	GRGCYC	2 cut(s)	747, 1303
Eco31I	GGTCTC	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	416, 446
Eco53kI	GAGCTC	2 cut(s)	745, 1301
Eco57I	CTGAAG	1 cut(s)	1053
Eco91I	GGTNACC	1 cut(s)	404
EcoICRI	GAGCTC	2 cut(s)	745, 1301
EcoO65I	GGTNACC	1 cut(s)	404
EcoRII	CCWGG	2 cut(s)	503, 603
EcoT14I	CCWWGG	2 cut(s)	321, 1048
EcoT22I	ATGCAT	1 cut(s)	234
EcoT38I	GRGCYC	2 cut(s)	747, 1303
ErhI	CCWWGG	2 cut(s)	321, 1048
FaqI	GGGAC	1 cut(s)	429
FauNDI	CATATG	2 cut(s)	70, 532
FokI	GGATG	3 cut(s)	11, 931, 1330
FriOI	GRGCYC	2 cut(s)	747, 1303
FspBI	CTAG	4 cut(s)	86, 180, 597, 1329
GlaI	GCGC	1 cut(s)	1257
GsaI	CCCAGC	1 cut(s)	574
GsuI	CTGGAG	1 cut(s)	879
HaeIII	GGCC	5 cut(s)	196, 332, 851, 934, 1323
HapII	CCGG	2 cut(s)	931, 1222
HgaI	GACGC	2 cut(s)	689, 1046
HhaI	GCGC	1 cut(s)	1258
Hin6I	GCGC	1 cut(s)	1256
HinP1I	GCGC	1 cut(s)	1256
HinfI	GANTC	5 cut(s)	548, 892, 927, 1097, 1216
HpaII	CCGG	2 cut(s)	931, 1222
HphI	GGTGA	4 cut(s)	559, 838, 1036, 1211
Hpy166II	GTNNAC	1 cut(s)	799
Hpy188III	TCNNGA	8 cut(s)	161, 186, 366, 374, 838, 1172, 1237, 1315
Hpy8I	GTNNAC	1 cut(s)	799
HpyAV	CCTTC	3 cut(s)	437, 471, 1169
HpyCH4III	ACNGT	2 cut(s)	62, 806
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	9 cut(s)	7, 232, 269, 287, 589, 686, 760, 1210, 1228
HpyF10VI	GCNNNNNNNGC	5 cut(s)	238, 571, 721, 1037, 1264
HpySE526I	ACGT	1 cut(s)	156
HspAI	GCGC	1 cut(s)	1256
Kzo9I	GATC	4 cut(s)	73, 88, 124, 1336
LmnI	GCTCC	7 cut(s)	65, 151, 364, 635, 721, 750, 982
LweI	GCATC	2 cut(s)	340, 896
MaeI	CTAG	4 cut(s)	86, 180, 597, 1329
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	3 cut(s)	404, 958, 1008
MalI	GATC	4 cut(s)	75, 90, 126, 1338
MboI	GATC	4 cut(s)	73, 88, 124, 1336
MboII	GAAGA	3 cut(s)	273, 901, 1046
MhlI	GDGCHC	3 cut(s)	726, 747, 1303
MlsI	TGGCCA	2 cut(s)	332, 851
MluCI	AATT	1 cut(s)	345
MluNI	TGGCCA	2 cut(s)	332, 851
MlyI	GAGTC	2 cut(s)	557, 886
MmeI	TCCRAC	2 cut(s)	45, 224
Mox20I	TGGCCA	2 cut(s)	332, 851
Mph1103I	ATGCAT	1 cut(s)	234
MroXI	GAANNNNTTC	1 cut(s)	277
MscI	TGGCCA	2 cut(s)	332, 851
MseI	TTAA	2 cut(s)	561, 948
MslI	CAYNNNNRTG	2 cut(s)	819, 917
Msp20I	TGGCCA	2 cut(s)	332, 851
MspA1I	CMGCKG	3 cut(s)	574, 755, 899
MspI	CCGG	2 cut(s)	931, 1222
MspR9I	CCNGG	2 cut(s)	505, 605
MvaI	CCWGG	2 cut(s)	505, 605
MvnI	CGCG	1 cut(s)	1258
MwoI	GCNNNNNNNGC	5 cut(s)	238, 571, 721, 1037, 1264
NcoI	CCATGG	1 cut(s)	321
NdeI	CATATG	2 cut(s)	70, 532
NdeII	GATC	4 cut(s)	73, 88, 124, 1336
NlaIV	GGNNCC	1 cut(s)	417
NmeAIII	GCCGAG	1 cut(s)	1303
NmuCI	GTSAC	1 cut(s)	958
NsiI	ATGCAT	1 cut(s)	234
NspI	RCATGY	4 cut(s)	236, 613, 886, 1111
PaeI	GCATGC	1 cut(s)	1111
PasI	CCCWGGG	1 cut(s)	604
PceI	AGGCCT	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	927, 1097, 1216
PleI	GAGTC	2 cut(s)	556, 886
PpsI	GAGTC	2 cut(s)	556, 886
Psp124BI	GAGCTC	2 cut(s)	747, 1303
Psp6I	CCWGG	2 cut(s)	503, 603
PspEI	GGTNACC	1 cut(s)	404
PspFI	CCCAGC	1 cut(s)	570
PspGI	CCWGG	2 cut(s)	503, 603
PspN4I	GGNNCC	1 cut(s)	417
PspPI	GGNCC	4 cut(s)	416, 446, 933, 1321
PstI	CTGCAG	3 cut(s)	271, 688, 1212
PstNI	CAGNNNCTG	1 cut(s)	683
PvuII	CAGCTG	3 cut(s)	574, 755, 899
RsaI	GTAC	2 cut(s)	265, 1283
RsaNI	GTAC	2 cut(s)	264, 1282
RseI	CAYNNNNRTG	2 cut(s)	819, 917
SacI	GAGCTC	2 cut(s)	747, 1303
SaqAI	TTAA	2 cut(s)	561, 948
Sau3AI	GATC	4 cut(s)	73, 88, 124, 1336
Sau96I	GGNCC	4 cut(s)	416, 446, 933, 1321
ScaI	AGTACT	2 cut(s)	265, 1283
SchI	GAGTC	2 cut(s)	557, 886
ScrFI	CCNGG	2 cut(s)	505, 605
SduI	GDGCHC	3 cut(s)	726, 747, 1303
SfaNI	GCATC	2 cut(s)	340, 896
SfcI	CTRYAG	3 cut(s)	267, 684, 1208
SinI	GGWCC	2 cut(s)	416, 446
SmiMI	CAYNNNNRTG	2 cut(s)	819, 917
SmlI	CTYRAG	2 cut(s)	716, 836
SmoI	CTYRAG	2 cut(s)	716, 836
SphI	GCATGC	1 cut(s)	1111
Sse9I	AATT	1 cut(s)	345
SseBI	AGGCCT	1 cut(s)	196
SsiI	CCGC	3 cut(s)	409, 730, 1258
SspMI	CTAG	4 cut(s)	86, 180, 597, 1329
SstI	GAGCTC	2 cut(s)	747, 1303
StuI	AGGCCT	1 cut(s)	196
StyD4I	CCNGG	2 cut(s)	503, 603
StyI	CCWWGG	2 cut(s)	321, 1048
TaaI	ACNGT	2 cut(s)	62, 806
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	551, 693, 969
TasI	AATT	1 cut(s)	345
TatI	WGTACW	2 cut(s)	263, 1281
TfiI	GAWTC	3 cut(s)	927, 1097, 1216
Tru1I	TTAA	2 cut(s)	561, 948
Tru9I	TTAA	2 cut(s)	561, 948
TscAI	CASTG	4 cut(s)	67, 477, 981, 1107
TseFI	GTSAC	1 cut(s)	958
Tsp45I	GTSAC	1 cut(s)	958
TspDTI	ATGAA	4 cut(s)	31, 845, 901, 1169
TspGWI	ACGGA	1 cut(s)	995
TspRI	CASTG	4 cut(s)	67, 477, 981, 1107
VpaK11BI	GGWCC	2 cut(s)	416, 446
XceI	RCATGY	4 cut(s)	236, 613, 886, 1111
XmnI	GAANNNNTTC	1 cut(s)	277
XspI	CTAG	4 cut(s)	86, 180, 597, 1329
ZrmI	AGTACT	2 cut(s)	265, 1283
Zsp2I	ATGCAT	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.