Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G06839 AT5G06839 AT5G06839 |
| fragaria_vesca | FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 FvH4_6g22750 |
| malus_domestica | MD12G1061900.v1.1 MD14G1062300.v1.1 |
| prunus_persica | Prupe.7G073000_v2.0.a1 Prupe.7G073000_v2.0.a1 |
| pyrus_communis | pycom12g05460 pycom14g04990 |
| rosa_chinensis | RchiOBHm_Chr3g0480361 |
| rosa_laevigata | RLG00000023490 |
| rosa_roxburghii | Rroxscaffold_6G00401490 |
| rosa_rugosa | Rorug03G0183200 |
| rosa_samantha | Rh3AG234700 Rh3BG267200 Rh3CG264500 Rh3DG260400 |
| rosa_wichuraiana | Rw3G021070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AbsI | CCTCGAGG | 1 cut(s) | 1451 |
| Acc36I | ACCTGC | 1 cut(s) | 664 |
| AccII | CGCG | 1 cut(s) | 36 |
| AciI | CCGC | 2 cut(s) | 36, 685 |
| AclI | AACGTT | 1 cut(s) | 1183 |
| AcoI | YGGCCR | 2 cut(s) | 597, 1401 |
| AcsI | RAATTY | 1 cut(s) | 1512 |
| AcuI | CTGAAG | 2 cut(s) | 378, 1332 |
| AfaI | GTAC | 2 cut(s) | 1038, 1562 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 638 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1524 |
| AjnI | CCWGG | 1 cut(s) | 779 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 414, 446 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1427, 1459 |
| Alw21I | GWGCWC | 2 cut(s) | 1005, 1582 |
| Alw26I | GTCTC | 7 cut(s) | 565, 818, 1016, 1301, 1355, 1356, 1577 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 962 |
| Ama87I | CYCGRG | 1 cut(s) | 1451 |
| AoxI | GGCC | 4 cut(s) | 461, 597, 1211, 1401 |
| ApoI | RAATTY | 1 cut(s) | 1512 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 479 |
| AspS9I | GGNCC | 5 cut(s) | 379, 641, 692, 722, 1212 |
| AsuHPI | GGTGA | 3 cut(s) | 59, 206, 401 |
| AvaI | CYCGRG | 1 cut(s) | 1451 |
| AvaII | GGWCC | 4 cut(s) | 379, 641, 692, 722 |
| BalI | TGGCCA | 2 cut(s) | 599, 1403 |
| BanII | GRGCYC | 1 cut(s) | 1582 |
| BbsI | GAAGAC | 1 cut(s) | 1175 |
| Bbv12I | GWGCWC | 2 cut(s) | 1005, 1582 |
| BceAI | ACGGC | 1 cut(s) | 950 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1525, 1559 |
| BciT130I | CCWGG | 1 cut(s) | 781 |
| BcoDI | GTCTC | 7 cut(s) | 565, 818, 1016, 1301, 1355, 1356, 1577 |
| BfaI | CTAG | 1 cut(s) | 951 |
| BfmI | CTRYAG | 2 cut(s) | 1032, 1425 |
| BfuAI | ACCTGC | 1 cut(s) | 664 |
| BglII | AGATCT | 1 cut(s) | 875 |
| BmcAI | AGTACT | 1 cut(s) | 1562 |
| Bme1390I | CCNGG | 1 cut(s) | 781 |
| Bme18I | GGWCC | 4 cut(s) | 379, 641, 692, 722 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1524 |
| BmeT110I | CYCGRG | 1 cut(s) | 1451 |
| BmgT120I | GGNCC | 5 cut(s) | 379, 641, 692, 722, 1212 |
| BmiI | GGNNCC | 2 cut(s) | 693, 724 |
| BmrFI | CCNGG | 1 cut(s) | 781 |
| BmsI | GCATC | 3 cut(s) | 217, 246, 486 |
| BpiI | GAAGAC | 1 cut(s) | 1175 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1375, 1407 |
| BpmI | CTGGAG | 1 cut(s) | 1016 |
| BpuEI | CTTGAG | 2 cut(s) | 864, 1311 |
| BsaBI | GATNNNNATC | 1 cut(s) | 207 |
| BsaI | GGTCTC | 2 cut(s) | 565, 1355 |
| BsaJI | CCNNGG | 1 cut(s) | 588 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 610, 640, 891, 921, 1427, 1457 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 638 |
| Bse118I | RCCGGY | 1 cut(s) | 1500 |
| Bse1I | ACTGG | 1 cut(s) | 855 |
| Bse3DI | GCAATG | 1 cut(s) | 616 |
| Bse8I | GATNNNNATC | 1 cut(s) | 207 |
| BseBI | CCWGG | 1 cut(s) | 781 |
| BseDI | CCNNGG | 1 cut(s) | 588 |
| BseGI | GGATG | 3 cut(s) | 258, 1203, 1602 |
| BseJI | GATNNNNATC | 1 cut(s) | 207 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 638 |
| BseMI | GCAATG | 1 cut(s) | 616 |
| BseMII | CTCAG | 8 cut(s) | 503, 776, 969, 1209, 1371, 1472, 1548, 1597 |
| BseNI | ACTGG | 1 cut(s) | 855 |
| BseRI | GAGGAG | 5 cut(s) | 618, 621, 912, 927, 1013 |
| BseYI | CCCAGC | 1 cut(s) | 284 |
| BsgI | GTGCAG | 1 cut(s) | 833 |
| Bsh1236I | CGCG | 1 cut(s) | 36 |
| BshFI | GGCC | 4 cut(s) | 463, 599, 1213, 1403 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1005, 1582 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1451 |
| BsiSI | CCGG | 3 cut(s) | 1052, 1175, 1501 |
| BslFI | GGGAC | 2 cut(s) | 705, 1428 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 638 |
| BsmAI | GTCTC | 7 cut(s) | 565, 818, 1016, 1301, 1355, 1356, 1577 |
| BsmBI | CGTCTC | 2 cut(s) | 1016, 1577 |
| BsmFI | GGGAC | 2 cut(s) | 705, 1428 |
| BsnI | GGCC | 4 cut(s) | 463, 599, 1213, 1403 |
| Bso31I | GGTCTC | 2 cut(s) | 565, 1355 |
| BsoBI | CYCGRG | 1 cut(s) | 1451 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1005, 1582 |
| Bsp143I | GATC | 5 cut(s) | 64, 202, 340, 875, 1615 |
| Bsp19I | CCATGG | 1 cut(s) | 588 |
| BspACI | CCGC | 2 cut(s) | 36, 685 |
| BspANI | GGCC | 4 cut(s) | 463, 599, 1213, 1403 |
| BspCNI | CTCAG | 8 cut(s) | 502, 775, 968, 1210, 1370, 1473, 1549, 1596 |
| BspFNI | CGCG | 1 cut(s) | 36 |
| BspLI | GGNNCC | 2 cut(s) | 693, 724 |
| BspMAI | CTGCAG | 1 cut(s) | 1036 |
| BspMI | ACCTGC | 1 cut(s) | 664 |
| BspTNI | GGTCTC | 2 cut(s) | 565, 1355 |
| BsrDI | GCAATG | 1 cut(s) | 616 |
| BsrFI | RCCGGY | 1 cut(s) | 1500 |
| BsrI | ACTGG | 1 cut(s) | 855 |
| BssAI | RCCGGY | 1 cut(s) | 1500 |
| BssECI | CCNNGG | 1 cut(s) | 588 |
| BssMI | GATC | 5 cut(s) | 64, 202, 340, 875, 1615 |
| BssT1I | CCWWGG | 1 cut(s) | 588 |
| Bst2UI | CCWGG | 1 cut(s) | 781 |
| Bst4CI | ACNGT | 4 cut(s) | 311, 372, 585, 1010 |
| Bst6I | CTCTTC | 1 cut(s) | 42 |
| BstC8I | GCNNGC | 4 cut(s) | 607, 759, 791, 1548 |
| BstDSI | CCRYGG | 1 cut(s) | 588 |
| BstEII | GGTNACC | 1 cut(s) | 680 |
| BstF5I | GGATG | 3 cut(s) | 258, 1203, 1602 |
| BstFNI | CGCG | 1 cut(s) | 36 |
| BstKTI | GATC | 5 cut(s) | 67, 205, 343, 878, 1618 |
| BstMAI | GTCTC | 7 cut(s) | 565, 818, 1016, 1301, 1355, 1356, 1577 |
| BstMBI | GATC | 5 cut(s) | 64, 202, 340, 875, 1615 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 232, 235, 505, 1000 |
| BstNI | CCWGG | 1 cut(s) | 781 |
| BstNSI | RCATGY | 2 cut(s) | 503, 889 |
| BstPI | GGTNACC | 1 cut(s) | 680 |
| BstSCI | CCNGG | 1 cut(s) | 779 |
| BstSFI | CTRYAG | 2 cut(s) | 1032, 1425 |
| BstUI | CGCG | 1 cut(s) | 36 |
| BstV2I | GAAGAC | 1 cut(s) | 1175 |
| BstX2I | RGATCY | 1 cut(s) | 875 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 595, 1411 |
| BstYI | RGATCY | 1 cut(s) | 875 |
| BsuRI | GGCC | 4 cut(s) | 463, 599, 1213, 1403 |
| BtgI | CCRYGG | 1 cut(s) | 588 |
| BtsCI | GGATG | 3 cut(s) | 258, 1203, 1602 |
| BveI | ACCTGC | 1 cut(s) | 664 |
| Cac8I | GCNNGC | 4 cut(s) | 607, 759, 791, 1548 |
| CaiI | CAGNNNCTG | 1 cut(s) | 962 |
| Cfr10I | RCCGGY | 1 cut(s) | 1500 |
| Cfr13I | GGNCC | 5 cut(s) | 379, 641, 692, 722, 1212 |
| CseI | GACGC | 2 cut(s) | 42, 968 |
| Csp6I | GTAC | 2 cut(s) | 1037, 1561 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 292, 327 |
| CviQI | GTAC | 2 cut(s) | 1037, 1561 |
| DpnI | GATC | 5 cut(s) | 66, 204, 342, 877, 1617 |
| DpnII | GATC | 5 cut(s) | 64, 202, 340, 875, 1615 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1524 |
| EaeI | YGGCCR | 2 cut(s) | 597, 1401 |
| Eam1104I | CTCTTC | 1 cut(s) | 42 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1524 |
| EarI | CTCTTC | 1 cut(s) | 42 |
| Ecl136II | GAGCTC | 1 cut(s) | 1580 |
| Eco130I | CCWWGG | 1 cut(s) | 588 |
| Eco147I | AGGCCT | 1 cut(s) | 463 |
| Eco24I | GRGCYC | 1 cut(s) | 1582 |
| Eco31I | GGTCTC | 2 cut(s) | 565, 1355 |
| Eco47I | GGWCC | 4 cut(s) | 379, 641, 692, 722 |
| Eco53kI | GAGCTC | 1 cut(s) | 1580 |
| Eco57I | CTGAAG | 2 cut(s) | 378, 1332 |
| Eco88I | CYCGRG | 1 cut(s) | 1451 |
| Eco91I | GGTNACC | 1 cut(s) | 680 |
| EcoICRI | GAGCTC | 1 cut(s) | 1580 |
| EcoO109I | RGGNCCY | 1 cut(s) | 722 |
| EcoO65I | GGTNACC | 1 cut(s) | 680 |
| EcoRII | CCWGG | 1 cut(s) | 779 |
| EcoT14I | CCWWGG | 1 cut(s) | 588 |
| EcoT22I | ATGCAT | 1 cut(s) | 501 |
| EcoT38I | GRGCYC | 1 cut(s) | 1582 |
| ErhI | CCWWGG | 1 cut(s) | 588 |
| Esp3I | CGTCTC | 2 cut(s) | 1016, 1577 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 97, 129 |
| FaqI | GGGAC | 2 cut(s) | 705, 1428 |
| FauNDI | CATATG | 1 cut(s) | 808 |
| FokI | GGATG | 3 cut(s) | 265, 1210, 1609 |
| FriOI | GRGCYC | 1 cut(s) | 1582 |
| FspBI | CTAG | 1 cut(s) | 951 |
| GsaI | CCCAGC | 1 cut(s) | 288 |
| GsuI | CTGGAG | 1 cut(s) | 1016 |
| HaeIII | GGCC | 4 cut(s) | 463, 599, 1213, 1403 |
| HapII | CCGG | 3 cut(s) | 1052, 1175, 1501 |
| HgaI | GACGC | 2 cut(s) | 42, 968 |
| HinfI | GANTC | 5 cut(s) | 241, 614, 1171, 1240, 1376 |
| HpaII | CCGG | 3 cut(s) | 1052, 1175, 1501 |
| HphI | GGTGA | 3 cut(s) | 59, 206, 401 |
| Hpy166II | GTNNAC | 2 cut(s) | 409, 1078 |
| Hpy188III | TCNNGA | 8 cut(s) | 12, 416, 453, 639, 650, 1228, 1334, 1594 |
| Hpy8I | GTNNAC | 2 cut(s) | 409, 1078 |
| HpyAV | CCTTC | 8 cut(s) | 105, 402, 561, 645, 654, 713, 747, 938 |
| HpyCH4III | ACNGT | 4 cut(s) | 311, 372, 585, 1010 |
| HpyCH4IV | ACGT | 1 cut(s) | 1183 |
| HpyCH4V | TGCA | 7 cut(s) | 104, 259, 499, 814, 865, 986, 1034 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 232, 235, 505, 1000 |
| HpySE526I | ACGT | 1 cut(s) | 1183 |
| Kzo9I | GATC | 5 cut(s) | 64, 202, 340, 875, 1615 |
| LmnI | GCTCC | 3 cut(s) | 314, 1000, 1261 |
| LweI | GCATC | 3 cut(s) | 217, 246, 486 |
| MaeI | CTAG | 1 cut(s) | 951 |
| MaeII | ACGT | 1 cut(s) | 1183 |
| MaeIII | GTNAC | 2 cut(s) | 680, 1287 |
| MalI | GATC | 5 cut(s) | 66, 204, 342, 877, 1617 |
| MboI | GATC | 5 cut(s) | 64, 202, 340, 875, 1615 |
| MboII | GAAGA | 7 cut(s) | 59, 90, 111, 114, 422, 1180, 1325 |
| MflI | RGATCY | 1 cut(s) | 875 |
| MhlI | GDGCHC | 2 cut(s) | 1005, 1582 |
| MlsI | TGGCCA | 2 cut(s) | 599, 1403 |
| MluCI | AATT | 4 cut(s) | 335, 442, 1494, 1512 |
| MluNI | TGGCCA | 2 cut(s) | 599, 1403 |
| MlyI | GAGTC | 1 cut(s) | 1165 |
| MmeI | TCCRAC | 1 cut(s) | 491 |
| Mox20I | TGGCCA | 2 cut(s) | 599, 1403 |
| Mph1103I | ATGCAT | 1 cut(s) | 501 |
| MroXI | GAANNNNTTC | 1 cut(s) | 479 |
| MscI | TGGCCA | 2 cut(s) | 599, 1403 |
| MseI | TTAA | 2 cut(s) | 837, 1256 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1098, 1196 |
| Msp20I | TGGCCA | 2 cut(s) | 599, 1403 |
| MspA1I | CMGCKG | 1 cut(s) | 530 |
| MspI | CCGG | 3 cut(s) | 1052, 1175, 1501 |
| MspR9I | CCNGG | 1 cut(s) | 781 |
| MvaI | CCWGG | 1 cut(s) | 781 |
| MvnI | CGCG | 1 cut(s) | 36 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 232, 235, 505, 1000 |
| NcoI | CCATGG | 1 cut(s) | 588 |
| NdeI | CATATG | 1 cut(s) | 808 |
| NdeII | GATC | 5 cut(s) | 64, 202, 340, 875, 1615 |
| NlaIV | GGNNCC | 2 cut(s) | 693, 724 |
| NsiI | ATGCAT | 1 cut(s) | 501 |
| NspI | RCATGY | 2 cut(s) | 503, 889 |
| PaeR7I | CTCGAG | 1 cut(s) | 1451 |
| PceI | AGGCCT | 1 cut(s) | 463 |
| PdmI | GAANNNNTTC | 1 cut(s) | 479 |
| PfeI | GAWTC | 4 cut(s) | 241, 614, 1240, 1376 |
| PleI | GAGTC | 1 cut(s) | 1165 |
| PpsI | GAGTC | 1 cut(s) | 1165 |
| PpuMI | RGGWCCY | 1 cut(s) | 722 |
| Psp124BI | GAGCTC | 1 cut(s) | 1582 |
| Psp1406I | AACGTT | 1 cut(s) | 1183 |
| Psp5II | RGGWCCY | 1 cut(s) | 722 |
| Psp6I | CCWGG | 1 cut(s) | 779 |
| PspEI | GGTNACC | 1 cut(s) | 680 |
| PspFI | CCCAGC | 1 cut(s) | 284 |
| PspGI | CCWGG | 1 cut(s) | 779 |
| PspN4I | GGNNCC | 2 cut(s) | 693, 724 |
| PspPI | GGNCC | 5 cut(s) | 379, 641, 692, 722, 1212 |
| PspPPI | RGGWCCY | 1 cut(s) | 722 |
| PspXI | VCTCGAGB | 1 cut(s) | 1451 |
| PstI | CTGCAG | 1 cut(s) | 1036 |
| PstNI | CAGNNNCTG | 1 cut(s) | 962 |
| PsuI | RGATCY | 1 cut(s) | 875 |
| PvuII | CAGCTG | 1 cut(s) | 530 |
| RsaI | GTAC | 2 cut(s) | 1038, 1562 |
| RsaNI | GTAC | 2 cut(s) | 1037, 1561 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1098, 1196 |
| SacI | GAGCTC | 1 cut(s) | 1582 |
| SaqAI | TTAA | 2 cut(s) | 837, 1256 |
| Sau3AI | GATC | 5 cut(s) | 64, 202, 340, 875, 1615 |
| Sau96I | GGNCC | 5 cut(s) | 379, 641, 692, 722, 1212 |
| ScaI | AGTACT | 1 cut(s) | 1562 |
| SchI | GAGTC | 1 cut(s) | 1165 |
| ScrFI | CCNGG | 1 cut(s) | 781 |
| SduI | GDGCHC | 2 cut(s) | 1005, 1582 |
| SfaNI | GCATC | 3 cut(s) | 217, 246, 486 |
| SfcI | CTRYAG | 2 cut(s) | 1032, 1425 |
| Sfr274I | CTCGAG | 1 cut(s) | 1451 |
| SinI | GGWCC | 4 cut(s) | 379, 641, 692, 722 |
| SlaI | CTCGAG | 1 cut(s) | 1451 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1098, 1196 |
| SmlI | CTYRAG | 3 cut(s) | 879, 1326, 1451 |
| SmoI | CTYRAG | 3 cut(s) | 879, 1326, 1451 |
| Sse9I | AATT | 4 cut(s) | 335, 442, 1494, 1512 |
| SseBI | AGGCCT | 1 cut(s) | 463 |
| SsiI | CCGC | 2 cut(s) | 36, 685 |
| SspI | AATATT | 2 cut(s) | 277, 478 |
| SspMI | CTAG | 1 cut(s) | 951 |
| SstI | GAGCTC | 1 cut(s) | 1582 |
| StuI | AGGCCT | 1 cut(s) | 463 |
| StyD4I | CCNGG | 1 cut(s) | 779 |
| StyI | CCWWGG | 1 cut(s) | 588 |
| TaaI | ACNGT | 4 cut(s) | 311, 372, 585, 1010 |
| TaiI | ACGT | 1 cut(s) | 1186 |
| TaqI | TCGA | 4 cut(s) | 1027, 1248, 1452, 1609 |
| TasI | AATT | 4 cut(s) | 335, 442, 1494, 1512 |
| TatI | WGTACW | 2 cut(s) | 1036, 1560 |
| TfiI | GAWTC | 4 cut(s) | 241, 614, 1240, 1376 |
| Tru1I | TTAA | 2 cut(s) | 837, 1256 |
| Tru9I | TTAA | 2 cut(s) | 837, 1256 |
| TspDTI | ATGAA | 8 cut(s) | 105, 283, 422, 1074, 1116, 1180, 1368, 1448 |
| TspGWI | ACGGA | 1 cut(s) | 1274 |
| VpaK11BI | GGWCC | 4 cut(s) | 379, 641, 692, 722 |
| XapI | RAATTY | 1 cut(s) | 1512 |
| XceI | RCATGY | 2 cut(s) | 503, 889 |
| XhoI | CTCGAG | 1 cut(s) | 1451 |
| XmnI | GAANNNNTTC | 1 cut(s) | 479 |
| XspI | CTAG | 1 cut(s) | 951 |
| ZrmI | AGTACT | 1 cut(s) | 1562 |
| Zsp2I | ATGCAT | 1 cut(s) | 501 |