Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005747

Physical Location & Seq

Genomic Coordinates Forward (+)

2167120 .. 2169437

Gene Structure 2318 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGATCGTTATTCGAGGAGGAATTTAGAGGATCTTGTTGTGCCTAACTATCAAGAGACATCAGATTCGTACCCTTCTCCTGATATGTGGGGTACTGGATGGAGCATGAACTCTTCAGAAGCTGCTGAGAAATGTTTTGATTATGATGTGATTCACAATGGTTTCAGTGGAGGATTATACAGTCAGATGGAGATGGATATGGGAACTAGTGAACAAGTAGAAGAAGAAACTAAGAAGTTAAAGGCTAGTGGTTGTTTTGACCGTTCGCTTCATGATTTTGATGAAATCCAACACATGGATGACATGTTCTTAAGTTCCATTTTGGAGGATGTTCCAGGGAATGAGAATTTTCTTTCTTTCAAGGAGTCGGATAATAACAACAGCTCCAGTTCCTCCTATCTCGACACAACTGATGGCAGGGAAGTCCCTTTGTTCCATTACAACTGGGAAACTTGTCAAGATATGCCACTTATGGAGGAGGATGCACCTATGAATCTGTGTGAGGAGAACAAGGAGGAGGCATCTGCTGAAGAAGTTGTGTTGCAGGATCTACAAAGGGCTACAGAAATGTTGACTGATGATACCCGCAAGTGCTTCCGCGATACCTTTTACCGGCTTGCAAAGAACTCACAACAGAAGTCAGACTCCAACTCGGATGAGTTCCTTGAGGATAGAACCAGTAGGGAAACTGAATTTGAAACCAAACTCAATCGACAGAGCCGTGGCCAATCTCACATTCAACAAGATGGAATCCAACATGAGAAATATGCCTCCACCGAAGAGACTTTCTTCTGTTCAAGGATAAGAGAGTTTCATCATATTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

32.13

Weight (kDa)

4.41

Isoelectric Point (pI)

62.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12320 AT3G12320 AT3G12320 AT5G06980 AT5G06980 AT5G06980 AT5G06980 AT5G06980
fragaria_vesca	FvH4_7g03880 FvH4_7g03880 FvH4_7g03880 FvH4_7g03880
malus_domestica	MD07G1043900.v1.1
prunus_persica	Prupe.2G043600_v2.0.a1
pyrus_communis	pycom02g23690 pycom07g03150
rosa_chinensis	RchiOBHm_Chr1g0327331
rosa_laevigata	RLG00000029998
rosa_multiflora	Rmu_sc0003600.1_g000038
rosa_roxburghii	Rroxscaffold_4G00322750
rosa_rugosa	Rorug01G0066400 Rorug01G0066500 Rorug01G0066600
rosa_samantha	Rh1AG083300 Rh1BG066200 Rh1CG081200 Rh1DG087600
rosa_wichuraiana	Rw1G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccII	CGCG	1 cut(s)	600
AciI	CCGC	2 cut(s)	586, 598
AclWI	GGATC	3 cut(s)	12, 39, 555
AcoI	YGGCCR	1 cut(s)	724
AcsI	RAATTY	3 cut(s)	22, 346, 692
AcuI	CTGAAG	2 cut(s)	99, 549
AfaI	GTAC	2 cut(s)	71, 94
AfiI	CCNNNNNNNGG	2 cut(s)	295, 612
AflII	CTTAAG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	4 cut(s)	361, 698, 740, 798
AhlI	ACTAGT	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	334
AjuI	GAANNNNNNNTTGG	2 cut(s)	720, 752
AloI	GAACNNNNNNTCC	2 cut(s)	290, 322
AluBI	AGCT	2 cut(s)	122, 384
AluI	AGCT	2 cut(s)	122, 384
Alw26I	GTCTC	2 cut(s)	50, 776
AlwI	GGATC	3 cut(s)	12, 39, 555
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	1 cut(s)	724
ApeKI	GCWGC	1 cut(s)	122
ApoI	RAATTY	3 cut(s)	22, 346, 692
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
BalI	TGGCCA	1 cut(s)	726
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	5 cut(s)	93, 181, 187, 407, 740
BceAI	ACGGC	1 cut(s)	705
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	2 cut(s)	50, 776
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	2 cut(s)	207, 246
BfmI	CTRYAG	1 cut(s)	561
BfrI	CTTAAG	1 cut(s)	310
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	336
BmrFI	CCNGG	1 cut(s)	336
BmrI	ACTGGG	1 cut(s)	454
BmsI	GCATC	2 cut(s)	472, 530
BmuI	ACTGGG	1 cut(s)	454
BpmI	CTGGAG	1 cut(s)	370
BpuEI	CTTGAG	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	335, 721
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 612
Bse118I	RCCGGY	1 cut(s)	612
Bse1I	ACTGG	4 cut(s)	100, 387, 449, 678
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	335, 721
BseGI	GGATG	5 cut(s)	104, 304, 334, 487, 661
BseLI	CCNNNNNNNGG	2 cut(s)	295, 612
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	4 cut(s)	100, 387, 449, 678
BseRI	GAGGAG	4 cut(s)	31, 491, 518, 530
BseXI	GCAGC	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	1 cut(s)	726
BsiSI	CCGG	1 cut(s)	613
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	2 cut(s)	295, 612
BsmAI	GTCTC	2 cut(s)	50, 776
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	726
Bsp143I	GATC	3 cut(s)	4, 31, 547
BspACI	CCGC	2 cut(s)	586, 598
BspANI	GGCC	1 cut(s)	726
BspCNI	CTCAG	1 cut(s)	118
BspFNI	CGCG	1 cut(s)	600
BspHI	TCATGA	1 cut(s)	271
BspPI	GGATC	3 cut(s)	12, 39, 555
BspTI	CTTAAG	1 cut(s)	310
BsrFI	RCCGGY	1 cut(s)	612
BsrI	ACTGG	4 cut(s)	100, 387, 449, 678
BssAI	RCCGGY	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	335, 721
BssMI	GATC	3 cut(s)	4, 31, 547
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	2 cut(s)	182, 263
Bst6I	CTCTTC	2 cut(s)	118, 774
BstAFI	CTTAAG	1 cut(s)	310
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	2 cut(s)	126, 231
BstDSI	CCRYGG	1 cut(s)	721
BstF5I	GGATG	5 cut(s)	104, 304, 334, 487, 661
BstFNI	CGCG	1 cut(s)	600
BstKTI	GATC	3 cut(s)	7, 34, 550
BstMAI	GTCTC	2 cut(s)	50, 776
BstMBI	GATC	3 cut(s)	4, 31, 547
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	561
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	1 cut(s)	109
BstX2I	RGATCY	2 cut(s)	31, 547
BstYI	RGATCY	2 cut(s)	31, 547
BsuRI	GGCC	1 cut(s)	726
BtgI	CCRYGG	1 cut(s)	721
BtsCI	GGATG	5 cut(s)	104, 304, 334, 487, 661
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	618
CaiI	CAGNNNCTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	271
Cfr10I	RCCGGY	1 cut(s)	612
Csp6I	GTAC	2 cut(s)	70, 93
CviAII	CATG	5 cut(s)	106, 272, 295, 304, 758
CviJI	RGCY	7 cut(s)	122, 245, 384, 560, 616, 720, 726
CviKI_1	RGCY	7 cut(s)	122, 245, 384, 560, 616, 720, 726
CviQI	GTAC	2 cut(s)	70, 93
DdeI	CTNAG	2 cut(s)	126, 231
DpnI	GATC	3 cut(s)	6, 33, 549
DpnII	GATC	3 cut(s)	4, 31, 547
EaeI	YGGCCR	1 cut(s)	724
Eam1104I	CTCTTC	2 cut(s)	118, 774
EarI	CTCTTC	2 cut(s)	118, 774
Eco57I	CTGAAG	2 cut(s)	99, 549
EcoRII	CCWGG	1 cut(s)	334
FaeI	CATG	5 cut(s)	109, 275, 298, 307, 761
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	5 cut(s)	105, 271, 294, 303, 757
FauI	CCCGC	1 cut(s)	593
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	5 cut(s)	111, 311, 341, 494, 668
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	2 cut(s)	207, 246
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	726
HapII	CCGG	1 cut(s)	613
Hin1II	CATG	5 cut(s)	109, 275, 298, 307, 761
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HinfI	GANTC	6 cut(s)	65, 151, 365, 493, 644, 750
HpaII	CCGG	1 cut(s)	613
Hpy166II	GTNNAC	2 cut(s)	212, 573
Hpy188I	TCNGA	6 cut(s)	64, 118, 186, 370, 643, 655
Hpy188III	TCNNGA	5 cut(s)	53, 80, 272, 401, 458
Hpy8I	GTNNAC	2 cut(s)	212, 573
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	2 cut(s)	182, 263
HpyCH4V	TGCA	3 cut(s)	485, 544, 620
HpyF3I	CTNAG	2 cut(s)	126, 231
Hsp92II	CATG	5 cut(s)	109, 275, 298, 307, 761
Kzo9I	GATC	3 cut(s)	4, 31, 547
LmnI	GCTCC	2 cut(s)	102, 389
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	2 cut(s)	472, 530
MaeI	CTAG	2 cut(s)	207, 246
MalI	GATC	3 cut(s)	6, 33, 549
MboI	GATC	3 cut(s)	4, 31, 547
MboII	GAAGA	6 cut(s)	105, 233, 236, 542, 781, 791
MflI	RGATCY	2 cut(s)	31, 547
MlsI	TGGCCA	1 cut(s)	726
MluCI	AATT	3 cut(s)	22, 346, 692
MluNI	TGGCCA	1 cut(s)	726
MlyI	GAGTC	2 cut(s)	374, 638
MmeI	TCCRAC	4 cut(s)	313, 348, 672, 778
Mox20I	TGGCCA	1 cut(s)	726
MscI	TGGCCA	1 cut(s)	726
MseI	TTAA	2 cut(s)	239, 311
MslI	CAYNNNNRTG	1 cut(s)	297
Msp20I	TGGCCA	1 cut(s)	726
MspCI	CTTAAG	1 cut(s)	310
MspI	CCGG	1 cut(s)	613
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MvnI	CGCG	1 cut(s)	600
NdeII	GATC	3 cut(s)	4, 31, 547
NlaIII	CATG	5 cut(s)	109, 275, 298, 307, 761
NspI	RCATGY	1 cut(s)	307
PagI	TCATGA	1 cut(s)	271
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	718
PfeI	GAWTC	4 cut(s)	65, 151, 493, 750
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	2 cut(s)	373, 638
PpsI	GAGTC	2 cut(s)	373, 638
PscI	ACATGT	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	2 cut(s)	31, 547
RsaI	GTAC	2 cut(s)	71, 94
RsaNI	GTAC	2 cut(s)	70, 93
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	2 cut(s)	239, 311
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	3 cut(s)	4, 31, 547
SchI	GAGTC	2 cut(s)	374, 638
ScrFI	CCNGG	1 cut(s)	336
SetI	ASST	4 cut(s)	124, 386, 490, 608
SfaNI	GCATC	2 cut(s)	472, 530
SfcI	CTRYAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	310, 665
SmoI	CTYRAG	2 cut(s)	310, 665
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	3 cut(s)	22, 346, 692
SsiI	CCGC	2 cut(s)	586, 598
SspMI	CTAG	2 cut(s)	207, 246
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	2 cut(s)	182, 263
TaqI	TCGA	3 cut(s)	14, 402, 712
TasI	AATT	3 cut(s)	22, 346, 692
TfiI	GAWTC	4 cut(s)	65, 151, 493, 750
Tru1I	TTAA	2 cut(s)	239, 311
Tru9I	TTAA	2 cut(s)	239, 311
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	5 cut(s)	122, 260, 297, 506, 803
TspRI	CASTG	1 cut(s)	172
Van91I	CCANNNNNTGG	1 cut(s)	295
Vha464I	CTTAAG	1 cut(s)	310
XapI	RAATTY	3 cut(s)	22, 346, 692
XceI	RCATGY	1 cut(s)	307
XspI	CTAG	2 cut(s)	207, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.