Prupe.2G043600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0005747
Physical Location & Seq
Forward (+)
4825538 .. 4830474
4937 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G043600.1

Sequence Viewer

Length: 1260 bp
ATGGAGTGGTATTACGGGAGTGGCATGGATGATGTTGTTGTTCCAAATGATGGGGGATCGGACAGGCTTCCATCTCCGGACAGTTGGTCGAAATGGGGAATCAGTGCTTCCGAATGCTTTCAGCCCACTAATAAATGCTTTTCTATATATCCACAATTCACTAAAGAGCTCAACTATAATGGTAGCAGTTTATTTGATGACATGGAGATGGAAACTTCTGTTAATGAAAAAGATCTATCTAGCAGTTCAAGTGTGTGTGAAGGATTTTCCGAGGACTCTCTTCAGCAGACCACACATTCATTAAATCGAACCAATAATCAGCTTGAAGACCTAGCAGGACTCGAACAGATGGATGACATTTTCTTGAGTTCCTTACTTGATGATCTTCCTGGGGCAGAAAATGTCCACAAGTCATTCTATTTTTGTCCTGATTCCAATGGCATGTTGCCCCCTGATAATATCTCGACAAGCATGAGTTTGGAATCACAAAGTTTCTCAAGCAGTGCACATAGTGCAGGAAGCTCAAAGTATCTTAAAAATCATGCATTTTCACCAGCGGCGGGTTCAGAGAAGGGGCATGCCACTACTTCACAGTATATTCAATGCAACTCAGAGCAAAAAGCTTGCCCATCAGTAAAGGCAGAAAGCGGCTTTGCCCCACCTGAGCAAGGCAGCATGAATGGACTTCTGGGTGAGGAAACATCAGTTGAAGAATCGGTATTGCATGAACTGGAAATGGTGATGACACAGTTGAATGAAAAGACACGAATTTGCTTTCGCGATGCCTTATACCGCCTTGCCAACAACTCAAAAGGAAATCTTGCTACACAGAGCCAAGATGGAGACCAAGCGAGTGAAATTGCAGAACCCTCTTCATGGACAGCTCAGGATGAGACTATCAGGTCAGGGAGCAATAAGGGTACAGAATCAGAGACAAACACCATTGACAGAGCCATTGCAAACCTCATGTTCAATGAGATGGACTTTAATGTGCAACCTCTTTCTGGAGGAGCACCGTTAGACCCCAAACAAGAAGCCAGTGGAGTGACTGGGCAGCAAACTGACAACACCTGTCGGCCACAAATCTCCCATTCACATCTCCTGTCATTTGTACCACATGATGCTGAAGTTCCAATACTTGGAGAACGAAGCATGCATGCTGAAACAGATCATCAAATACACAAAAGTTTCTCTGCATGTAATGCAGGTGGAAAGAGGAAGGCTCCAATGACCGAGTTCGAGTCTACAACTGGGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

420

Amino Acids

45.69

Weight (kDa)

4.53

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1196
AasI GACNNNNNNGTC 1 cut(s) 901
Acc36I ACCTGC 1 cut(s) 1196
AccB7I CCANNNNNTGG 2 cut(s) 50, 1139
AccI GTMKAC 1 cut(s) 1244
AccII CGCG 1 cut(s) 780
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 4 cut(s) 557, 560, 648, 793
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 1076
AcsI RAATTY 1 cut(s) 768
AcuI CTGAAG 2 cut(s) 266, 1146
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 3 cut(s) 922, 1113, 1256
AfiI CCNNNNNNNGG 6 cut(s) 50, 560, 668, 876, 1004, 1139
AgsI TTSAA 6 cut(s) 249, 326, 602, 710, 754, 973
AhdI GACNNNNNGTC 1 cut(s) 85
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 5 cut(s) 169, 322, 522, 623, 884
AluI AGCT 5 cut(s) 169, 322, 522, 623, 884
Alw21I GWGCWC 3 cut(s) 171, 508, 1015
Alw26I GTCTC 3 cut(s) 837, 887, 926
Alw44I GTGCAC 1 cut(s) 504
AlwI GGATC 1 cut(s) 64
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 1 cut(s) 1076
ApaLI GTGCAC 1 cut(s) 504
ApeKI GCWGC 2 cut(s) 672, 1054
ApoI RAATTY 1 cut(s) 768
Asp700I GAANNNNTTC 1 cut(s) 117
AsuHPI GGTGA 3 cut(s) 543, 704, 751
BaeGI GKGCMC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 171
BarI GAAGNNNNNNTAC 2 cut(s) 1119, 1151
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 3 cut(s) 171, 508, 1015
BbvI GCAGC 2 cut(s) 684, 1066
BccI CCATC 7 cut(s) 44, 79, 202, 343, 637, 833, 973
BciT130I CCWGG 1 cut(s) 390
BcoDI GTCTC 3 cut(s) 837, 887, 926
BfaI CTAG 2 cut(s) 240, 332
BfuAI ACCTGC 1 cut(s) 1196
BglII AGATCT 1 cut(s) 232
BisI GCNGC 4 cut(s) 558, 649, 673, 1055
BlsI GCNGC 4 cut(s) 559, 650, 674, 1056
Bme1390I CCNGG 1 cut(s) 390
BmeRI GACNNNNNGTC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 1224
BmrFI CCNGG 1 cut(s) 390
BmrI ACTGGG 2 cut(s) 1059, 1260
BmsI GCATC 2 cut(s) 772, 1111
BmuI ACTGGG 2 cut(s) 1059, 1260
BpiI GAAGAC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 1207, 1239
BpmI CTGGAG 1 cut(s) 1026
Bpu10I CCTNAGC 2 cut(s) 663, 885
BpuEI CTTGAG 2 cut(s) 385, 481
BsaI GGTCTC 1 cut(s) 837
BsaJI CCNNGG 2 cut(s) 270, 389
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 560, 668, 876, 1004, 1139
Bse1I ACTGG 4 cut(s) 735, 1038, 1054, 1255
Bse3DI GCAATG 1 cut(s) 954
BseAI TCCGGA 1 cut(s) 76
BseBI CCWGG 1 cut(s) 390
BseDI CCNNGG 2 cut(s) 270, 389
BseGI GGATG 3 cut(s) 34, 358, 895
BseLI CCNNNNNNNGG 6 cut(s) 50, 560, 668, 876, 1004, 1139
BseMI GCAATG 1 cut(s) 954
BseMII CTCAG 3 cut(s) 624, 654, 899
BseNI ACTGG 4 cut(s) 735, 1038, 1054, 1255
BseRI GAGGAG 1 cut(s) 1023
BseSI GKGCMC 1 cut(s) 508
BseXI GCAGC 2 cut(s) 684, 1066
BsgI GTGCAG 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 780
BshFI GGCC 1 cut(s) 1078
BsiHKAI GWGCWC 3 cut(s) 171, 508, 1015
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 6 cut(s) 50, 560, 668, 876, 1004, 1139
BsmAI GTCTC 3 cut(s) 837, 887, 926
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 1 cut(s) 1078
Bso31I GGTCTC 1 cut(s) 837
Bsp1286I GDGCHC 3 cut(s) 171, 508, 1015
Bsp13I TCCGGA 1 cut(s) 76
Bsp143I GATC 4 cut(s) 56, 232, 382, 1168
Bsp68I TCGCGA 1 cut(s) 780
BspACI CCGC 4 cut(s) 557, 560, 648, 793
BspANI GGCC 1 cut(s) 1078
BspCNI CTCAG 3 cut(s) 623, 655, 898
BspEI TCCGGA 1 cut(s) 76
BspFNI CGCG 1 cut(s) 780
BspLI GGNNCC 1 cut(s) 1224
BspMI ACCTGC 1 cut(s) 1196
BspPI GGATC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 837
BsrDI GCAATG 1 cut(s) 954
BsrI ACTGG 4 cut(s) 735, 1038, 1054, 1255
BssECI CCNNGG 2 cut(s) 270, 389
BssMI GATC 4 cut(s) 56, 232, 382, 1168
Bst2UI CCWGG 1 cut(s) 390
Bst4CI ACNGT 4 cut(s) 83, 594, 750, 1017
Bst6I CTCTTC 2 cut(s) 285, 877
BstAPI GCANNNNNTGC 2 cut(s) 512, 1202
BstC8I GCNNGC 4 cut(s) 579, 625, 1154, 1158
BstDEI CTNAG 3 cut(s) 610, 663, 885
BstENI CCTNNNNNAGG 1 cut(s) 666
BstF5I GGATG 3 cut(s) 34, 358, 895
BstFNI CGCG 1 cut(s) 780
BstKTI GATC 4 cut(s) 59, 235, 385, 1171
BstMAI GTCTC 3 cut(s) 837, 887, 926
BstMBI GATC 4 cut(s) 56, 232, 382, 1168
BstMWI GCNNNNNNNGC 2 cut(s) 512, 1202
BstNI CCWGG 1 cut(s) 390
BstNSI RCATGY 5 cut(s) 445, 581, 1156, 1160, 1200
BstSCI CCNGG 1 cut(s) 388
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 1 cut(s) 780
BstV1I GCAGC 2 cut(s) 684, 1066
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 1078
BtgZI GCGATG 1 cut(s) 795
BtsCI GGATG 3 cut(s) 34, 358, 895
BtsI GCAGTG 1 cut(s) 508
BtsIMutI CAGTG 3 cut(s) 109, 508, 1045
BtuMI TCGCGA 1 cut(s) 780
BveI ACCTGC 1 cut(s) 1196
Cac8I GCNNGC 4 cut(s) 579, 625, 1154, 1158
Csp6I GTAC 3 cut(s) 921, 1112, 1255
CviQI GTAC 3 cut(s) 921, 1112, 1255
DdeI CTNAG 3 cut(s) 610, 663, 885
DpnI GATC 4 cut(s) 58, 234, 384, 1170
DpnII GATC 4 cut(s) 56, 232, 382, 1168
DraIII CACNNNGTG 1 cut(s) 512
DrdI GACNNNNNNGTC 1 cut(s) 901
DriI GACNNNNNGTC 1 cut(s) 85
DseDI GACNNNNNNGTC 1 cut(s) 901
EaeI YGGCCR 1 cut(s) 1076
Eam1104I CTCTTC 2 cut(s) 285, 877
Eam1105I GACNNNNNGTC 1 cut(s) 85
EarI CTCTTC 2 cut(s) 285, 877
Ecl136II GAGCTC 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 171
Eco31I GGTCTC 1 cut(s) 837
Eco53kI GAGCTC 1 cut(s) 169
Eco57I CTGAAG 2 cut(s) 266, 1146
EcoICRI GAGCTC 1 cut(s) 169
EcoNI CCTNNNNNAGG 1 cut(s) 666
EcoRII CCWGG 1 cut(s) 388
EcoT22I ATGCAT 2 cut(s) 547, 1158
EcoT38I GRGCYC 1 cut(s) 171
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FauI CCCGC 1 cut(s) 553
FblI GTMKAC 1 cut(s) 1244
Fnu4HI GCNGC 4 cut(s) 558, 649, 673, 1055
FokI GGATG 3 cut(s) 41, 365, 902
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 4 cut(s) 558, 649, 673, 1055
FspBI CTAG 2 cut(s) 240, 332
GluI GCNGC 4 cut(s) 558, 649, 673, 1055
GsuI CTGGAG 1 cut(s) 1026
HaeIII GGCC 1 cut(s) 1078
HapII CCGG 1 cut(s) 77
HindIII AAGCTT 1 cut(s) 621
HinfI GANTC 8 cut(s) 99, 275, 339, 431, 482, 713, 926, 1241
HpaII CCGG 1 cut(s) 77
HphI GGTGA 3 cut(s) 543, 704, 751
Hpy166II GTNNAC 3 cut(s) 406, 506, 1245
Hpy188I TCNGA 6 cut(s) 61, 112, 271, 568, 613, 931
Hpy188III TCNNGA 7 cut(s) 77, 364, 428, 463, 779, 887, 1005
Hpy8I GTNNAC 3 cut(s) 406, 506, 1245
HpyAV CCTTC 3 cut(s) 254, 565, 1213
HpyCH4III ACNGT 4 cut(s) 83, 594, 750, 1017
HpyF10VI GCNNNNNNNGC 2 cut(s) 512, 1202
HpyF3I CTNAG 3 cut(s) 610, 663, 885
Kpn2I TCCGGA 1 cut(s) 76
Kzo9I GATC 4 cut(s) 56, 232, 382, 1168
LmnI GCTCC 3 cut(s) 909, 1010, 1228
Lsp1109I GCAGC 2 cut(s) 684, 1066
LweI GCATC 2 cut(s) 772, 1111
MaeI CTAG 2 cut(s) 240, 332
MaeIII GTNAC 1 cut(s) 1045
MalI GATC 4 cut(s) 58, 234, 384, 1170
MboI GATC 4 cut(s) 56, 232, 382, 1168
MboII GAAGA 5 cut(s) 272, 338, 377, 722, 864
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 3 cut(s) 171, 508, 1015
MluCI AATT 3 cut(s) 155, 768, 858
MlyI GAGTC 3 cut(s) 269, 333, 1250
MnlI CCTC 7 cut(s) 265, 688, 880, 974, 1001, 1008, 1209
Mph1103I ATGCAT 2 cut(s) 547, 1158
MroI TCCGGA 1 cut(s) 76
MroXI GAANNNNTTC 1 cut(s) 117
MseI TTAA 4 cut(s) 222, 302, 534, 987
MslI CAYNNNNRTG 1 cut(s) 206
MspA1I CMGCKG 1 cut(s) 557
MspI CCGG 1 cut(s) 77
MspR9I CCNGG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 1 cut(s) 390
MvnI CGCG 1 cut(s) 780
MwoI GCNNNNNNNGC 2 cut(s) 512, 1202
NdeII GATC 4 cut(s) 56, 232, 382, 1168
NlaIV GGNNCC 1 cut(s) 1224
NmuCI GTSAC 1 cut(s) 1045
NruI TCGCGA 1 cut(s) 780
NsiI ATGCAT 2 cut(s) 547, 1158
NspI RCATGY 5 cut(s) 445, 581, 1156, 1160, 1200
PaeI GCATGC 3 cut(s) 581, 1156, 1160
PaqCI CACCTGC 1 cut(s) 1196
PctI GAATGC 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 117
PfeI GAWTC 5 cut(s) 99, 431, 482, 713, 926
PflMI CCANNNNNTGG 2 cut(s) 50, 1139
PkrI GCNGC 4 cut(s) 559, 650, 674, 1056
PleI GAGTC 3 cut(s) 269, 333, 1249
PpsI GAGTC 3 cut(s) 269, 333, 1249
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspN4I GGNNCC 1 cut(s) 1224
PsuI RGATCY 1 cut(s) 232
RruI TCGCGA 1 cut(s) 780
RsaI GTAC 3 cut(s) 922, 1113, 1256
RsaNI GTAC 3 cut(s) 921, 1112, 1255
RseI CAYNNNNRTG 1 cut(s) 206
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 4 cut(s) 222, 302, 534, 987
SatI GCNGC 4 cut(s) 558, 649, 673, 1055
Sau3AI GATC 4 cut(s) 56, 232, 382, 1168
SchI GAGTC 3 cut(s) 269, 333, 1250
ScrFI CCNGG 1 cut(s) 390
SduI GDGCHC 3 cut(s) 171, 508, 1015
SfaNI GCATC 2 cut(s) 772, 1111
SmiMI CAYNNNNRTG 1 cut(s) 206
SmlI CTYRAG 2 cut(s) 364, 496
SmoI CTYRAG 2 cut(s) 364, 496
SphI GCATGC 3 cut(s) 581, 1156, 1160
Sse9I AATT 3 cut(s) 155, 768, 858
SsiI CCGC 4 cut(s) 557, 560, 648, 793
SspMI CTAG 2 cut(s) 240, 332
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 1 cut(s) 388
TaaI ACNGT 4 cut(s) 83, 594, 750, 1017
TaqI TCGA 5 cut(s) 89, 307, 342, 464, 1239
TaqII GACCGA 1 cut(s) 1247
TasI AATT 3 cut(s) 155, 768, 858
TauI GCSGC 2 cut(s) 560, 651
TfiI GAWTC 5 cut(s) 99, 431, 482, 713, 926
Tru1I TTAA 4 cut(s) 222, 302, 534, 987
Tru9I TTAA 4 cut(s) 222, 302, 534, 987
TscAI CASTG 3 cut(s) 109, 508, 1045
TseFI GTSAC 1 cut(s) 1045
TseI GCWGC 2 cut(s) 672, 1054
Tsp45I GTSAC 1 cut(s) 1045
TspDTI ATGAA 6 cut(s) 240, 288, 692, 741, 771, 864
TspRI CASTG 3 cut(s) 109, 508, 1045
Van91I CCANNNNNTGG 2 cut(s) 50, 1139
VneI GTGCAC 1 cut(s) 504
XagI CCTNNNNNAGG 1 cut(s) 666
XapI RAATTY 1 cut(s) 768
XceI RCATGY 5 cut(s) 445, 581, 1156, 1160, 1200
XmiI GTMKAC 1 cut(s) 1244
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 2 cut(s) 240, 332
Zsp2I ATGCAT 2 cut(s) 547, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.