Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005747

Physical Location & Seq

Genomic Coordinates Reverse (-)

53103842 .. 53109147

Gene Structure 5306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029998

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGTCCACACTGATTGGACACACTGAAGGACCAACGATCAACCCTTACACCTTGAAGAGCCCGTCCGCTGCCGCCGCCATGAGGGGTTGTCGTCAGATAAGGCATGAGGGTGCAGTGAAGAAGGCCAAGCGCATTAGGGTCTCTAATAGGATTTTCTCTTTATTGATCTTAAACTGGGTCTTGATCACTTTCTCAATTAGGCCATCACAAGAACAAGTCTCCATGGATTGGTATTTCGGGAATGGAATTGATGACCTTGTTGTTCCAAATGATGGAGGATCTGACAGGCTTCCATCACCAGATAGCTGGTCAAAATGGGGAATAAGTGCATCTGAGTGCTTTCCTAATAAATGTTTTTCCATGTATCCACAATTCAGTAAAGAACTCAACTTCAGCAGTGGAAAAGGTTTATTTGATGAAGGTGAGATGGGAACTTCTGCTAATGACAGAGATCTATCCAGCAGTTCAAGTGTTTGTGAAGGATTGTCTGAGGGCTCTCTTCAGAAGACCTCACTTTCCTACAATCGGGCCTACAATCAACTTGAGGACGTAGCAGGACTCCAACAGATGGATGACATTTTCTTGAGTTCCTTACTTGATGATCTTCCTGGGGCAGAAAATGTACATAAATCGTTCTATTTTCGCTCTGATTCCAGTGGCATGTTAGCCAGTGATAGTATCTCGACAAGTATGAATTTGGAATCACAAAGTATTTCAAGCAGTGTTCACAGTGCTGGCAGCTCAAAGTATCTCAAAACTCATGCATTTTCACCGGAATTGGGTTCAGAGAAGGGGCATACCACTACTTCACAGTTCAGTCCATGCAACTCAGAGCAAAAAGACTCTCCACCAGTAAAGGCACAAACAGTTAGACTCATGTCTCCATCTGAGCAAGGGTGCATGCCTAGTGGTGTGGATGAGGAAACATCAGTTGAAGAATCTGTATTGCAGGAGTTGGAAATGGTGATGACACAGTTGACCAAAAAGACCCGAATCTGTTTTCGAGATGCTTTATACCGCCTTGCCGATAACTCAAAAGGAAATCCAGTTTCCCAGAGCCAAGATGGTGACCTTGCCATTGAAGAACTGTCTTCATGGGCAGCACATGATGAAACAACGAGGTCTGGGAGCAAGGAAGGCACAGAATCAGAGACAAACACCATTGACCGCGCAATTGCAAACCTCATGTTTAATGAGATAGACTTCAATGCACAAGACCTTTCTGGAGGATCATCATCAGACTCCAAACATGAAATCAATGGAGTGTCTGGTCAACAACAATCTGACAACCCCTGCCGGCTACAAATCTCTCATTCGCATCGCAATTCAGTTTTACCACATGATGCTGAGGTTCCTATACTTGGTCAAAGAGACGTGCATAAAAGTTTCTCAACCAGTAATGCTGGTGGAAAGAGGAAGACTCCATTGAGTGAGTTTGGGTCTGCAACTGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

486

Amino Acids

52.88

Weight (kDa)

5.11

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12320 AT3G12320 AT3G12320 AT5G06980 AT5G06980 AT5G06980 AT5G06980 AT5G06980
fragaria_vesca	FvH4_7g03880 FvH4_7g03880 FvH4_7g03880 FvH4_7g03880
malus_domestica	MD07G1043900.v1.1
prunus_persica	Prupe.2G043600_v2.0.a1
pyrus_communis	pycom02g23690 pycom07g03150
rosa_chinensis	RchiOBHm_Chr1g0327331
rosa_laevigata	RLG00000029998
rosa_multiflora	Rmu_sc0003600.1_g000038
rosa_roxburghii	Rroxscaffold_4G00322750
rosa_rugosa	Rorug01G0066400 Rorug01G0066500 Rorug01G0066600
rosa_samantha	Rh1AG083300 Rh1BG066200 Rh1CG081200 Rh1DG087600
rosa_wichuraiana	Rw1G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	228, 272, 568
AccII	CGCG	1 cut(s)	1170
AciI	CCGC	5 cut(s)	66, 72, 75, 1018, 1168
AclWI	GGATC	2 cut(s)	286, 1237
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	3 cut(s)	45, 376, 485
AfaI	GTAC	1 cut(s)	624
AfiI	CCNNNNNNNGG	7 cut(s)	81, 228, 272, 525, 568, 779, 1361
AgsI	TTSAA	6 cut(s)	55, 468, 717, 935, 1082, 1207
AjiI	CACGTC	1 cut(s)	1375
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	2 cut(s)	306, 741
AluI	AGCT	2 cut(s)	306, 741
Alw26I	GTCTC	5 cut(s)	145, 223, 885, 1145, 1365
AlwI	GGATC	2 cut(s)	286, 1237
AoxI	GGCC	3 cut(s)	123, 200, 528
ApeKI	GCWGC	3 cut(s)	68, 738, 1100
ApoI	RAATTY	1 cut(s)	694
AspLEI	GCGC	2 cut(s)	132, 1172
AspS9I	GGNCC	2 cut(s)	29, 528
AsuHPI	GGTGA	5 cut(s)	288, 434, 762, 976, 1079
AvaII	GGWCC	1 cut(s)	29
BanII	GRGCYC	2 cut(s)	62, 497
BbsI	GAAGAC	3 cut(s)	512, 1083, 1424
BbvCI	CCTCAGC	1 cut(s)	1347
BbvI	GCAGC	3 cut(s)	55, 750, 1112
BccI	CCATC	7 cut(s)	211, 266, 301, 421, 562, 892, 1058
BciT130I	CCWGG	1 cut(s)	609
BciVI	GTATCC	1 cut(s)	375
BclI	TGATCA	1 cut(s)	183
BcoDI	GTCTC	5 cut(s)	145, 223, 885, 1145, 1365
BfaI	CTAG	1 cut(s)	906
BfuI	GTATCC	1 cut(s)	375
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	5 cut(s)	69, 72, 75, 739, 1101
BlsI	GCNGC	5 cut(s)	70, 73, 76, 740, 1102
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	1 cut(s)	29
BmgBI	CACGTC	1 cut(s)	1375
BmgT120I	GGNCC	2 cut(s)	29, 528
BmiI	GGNNCC	1 cut(s)	1353
BmrFI	CCNGG	1 cut(s)	609
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	4 cut(s)	338, 997, 1327, 1333
BmuI	ACTGGG	1 cut(s)	184
BoxI	GACNNNNGTC	1 cut(s)	877
BpiI	GAAGAC	3 cut(s)	512, 1083, 1424
BplI	GAGNNNNNCTC	2 cut(s)	1405, 1437
BpmI	CTGGAG	1 cut(s)	1245
Bpu10I	CCTNAGC	1 cut(s)	1347
BpuEI	CTTGAG	2 cut(s)	563, 604
BsaBI	GATNNNNATC	1 cut(s)	1234
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	222, 608
BsaWI	WCCGGW	1 cut(s)	772
Bsc4I	CCNNNNNNNGG	7 cut(s)	81, 228, 272, 525, 568, 779, 1361
Bse118I	RCCGGY	1 cut(s)	1296
Bse1I	ACTGG	6 cut(s)	179, 654, 669, 851, 1046, 1395
Bse8I	GATNNNNATC	1 cut(s)	1234
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	2 cut(s)	222, 608
BseGI	GGATG	2 cut(s)	577, 922
BseJI	GATNNNNATC	1 cut(s)	1234
BseLI	CCNNNNNNNGG	7 cut(s)	81, 228, 272, 525, 568, 779, 1361
BseMII	CTCAG	6 cut(s)	324, 480, 843, 879, 1338, 1440
BseNI	ACTGG	6 cut(s)	179, 654, 669, 851, 1046, 1395
BseXI	GCAGC	3 cut(s)	55, 750, 1112
BsgI	GTGCAG	1 cut(s)	132
Bsh1236I	CGCG	1 cut(s)	1170
BshFI	GGCC	3 cut(s)	125, 202, 530
BsiSI	CCGG	2 cut(s)	773, 1297
BslI	CCNNNNNNNGG	7 cut(s)	81, 228, 272, 525, 568, 779, 1361
BsmAI	GTCTC	5 cut(s)	145, 223, 885, 1145, 1365
BsmBI	CGTCTC	1 cut(s)	1365
BsnI	GGCC	3 cut(s)	125, 202, 530
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	2 cut(s)	62, 497
Bsp1407I	TGTACA	1 cut(s)	622
Bsp143I	GATC	7 cut(s)	36, 165, 183, 278, 451, 601, 1229
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	5 cut(s)	66, 72, 75, 1018, 1168
BspANI	GGCC	3 cut(s)	125, 202, 530
BspCNI	CTCAG	6 cut(s)	325, 481, 842, 880, 1339, 1441
BspFNI	CGCG	1 cut(s)	1170
BspLI	GGNNCC	1 cut(s)	1353
BspPI	GGATC	2 cut(s)	286, 1237
BspQI	GCTCTTC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	1296
BsrGI	TGTACA	1 cut(s)	622
BsrI	ACTGG	6 cut(s)	179, 654, 669, 851, 1046, 1395
BssAI	RCCGGY	1 cut(s)	1296
BssECI	CCNNGG	2 cut(s)	222, 608
BssMI	GATC	7 cut(s)	36, 165, 183, 278, 451, 601, 1229
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	5 cut(s)	731, 813, 868, 975, 1089
Bst6I	CTCTTC	2 cut(s)	50, 504
BstAUI	TGTACA	1 cut(s)	622
BstC8I	GCNNGC	3 cut(s)	736, 902, 1298
BstDEI	CTNAG	6 cut(s)	333, 489, 829, 888, 1347, 1449
BstDSI	CCRYGG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	1067
BstF5I	GGATG	2 cut(s)	577, 922
BstFNI	CGCG	1 cut(s)	1170
BstHHI	GCGC	2 cut(s)	132, 1172
BstKTI	GATC	7 cut(s)	39, 168, 186, 281, 454, 604, 1232
BstMAI	GTCTC	5 cut(s)	145, 223, 885, 1145, 1365
BstMBI	GATC	7 cut(s)	36, 165, 183, 278, 451, 601, 1229
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 1137
BstNI	CCWGG	1 cut(s)	609
BstNSI	RCATGY	2 cut(s)	664, 904
BstPAI	GACNNNNGTC	1 cut(s)	877
BstPI	GGTNACC	1 cut(s)	1067
BstSCI	CCNGG	1 cut(s)	607
BstUI	CGCG	1 cut(s)	1170
BstV1I	GCAGC	3 cut(s)	55, 750, 1112
BstV2I	GAAGAC	3 cut(s)	512, 1083, 1424
BstX2I	RGATCY	2 cut(s)	278, 451
BstXI	CCANNNNNNTGG	1 cut(s)	306
BstYI	RGATCY	2 cut(s)	278, 451
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	125, 202, 530
BtgI	CCRYGG	1 cut(s)	222
BtgZI	GCGATG	1 cut(s)	1304
BtrI	CACGTC	1 cut(s)	1375
BtsCI	GGATG	2 cut(s)	577, 922
BtsI	GCAGTG	3 cut(s)	120, 403, 727
BtsIMutI	CAGTG	8 cut(s)	8, 21, 120, 403, 661, 676, 727, 736
Cac8I	GCNNGC	3 cut(s)	736, 902, 1298
CfoI	GCGC	2 cut(s)	132, 1172
Cfr10I	RCCGGY	1 cut(s)	1296
Cfr13I	GGNCC	2 cut(s)	29, 528
Csp6I	GTAC	1 cut(s)	623
CspCI	CAANNNNNGTGG	1 cut(s)	30
CviQI	GTAC	1 cut(s)	623
DdeI	CTNAG	6 cut(s)	333, 489, 829, 888, 1347, 1449
DpnI	GATC	7 cut(s)	38, 167, 185, 280, 453, 603, 1231
DpnII	GATC	7 cut(s)	36, 165, 183, 278, 451, 601, 1229
Eam1104I	CTCTTC	2 cut(s)	50, 504
EarI	CTCTTC	2 cut(s)	50, 504
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	2 cut(s)	62, 497
Eco31I	GGTCTC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	3 cut(s)	45, 376, 485
Eco91I	GGTNACC	1 cut(s)	1067
EcoO65I	GGTNACC	1 cut(s)	1067
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	1 cut(s)	766
EcoT38I	GRGCYC	2 cut(s)	62, 497
ErhI	CCWWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	1365
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	5 cut(s)	69, 72, 75, 739, 1101
FokI	GGATG	2 cut(s)	584, 929
FriOI	GRGCYC	2 cut(s)	62, 497
Fsp4HI	GCNGC	5 cut(s)	69, 72, 75, 739, 1101
FspBI	CTAG	1 cut(s)	906
GlaI	GCGC	2 cut(s)	131, 1171
GluI	GCNGC	5 cut(s)	69, 72, 75, 739, 1101
GsuI	CTGGAG	1 cut(s)	1245
HaeIII	GGCC	3 cut(s)	125, 202, 530
HapII	CCGG	2 cut(s)	773, 1297
HhaI	GCGC	2 cut(s)	132, 1172
Hin6I	GCGC	2 cut(s)	130, 1170
HinP1I	GCGC	2 cut(s)	130, 1170
HincII	GTYRAC	2 cut(s)	978, 1274
HindII	GTYRAC	2 cut(s)	978, 1274
HpaII	CCGG	2 cut(s)	773, 1297
HphI	GGTGA	5 cut(s)	288, 434, 762, 976, 1079
Hpy166II	GTNNAC	4 cut(s)	6, 727, 978, 1274
Hpy188III	TCNNGA	6 cut(s)	181, 238, 583, 682, 1004, 1224
Hpy8I	GTNNAC	4 cut(s)	6, 727, 978, 1274
HpyAV	CCTTC	6 cut(s)	20, 115, 413, 473, 784, 1130
HpyCH4III	ACNGT	5 cut(s)	731, 813, 868, 975, 1089
HpyCH4IV	ACGT	2 cut(s)	549, 1374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 1137
HpyF3I	CTNAG	6 cut(s)	333, 489, 829, 888, 1347, 1449
HpySE526I	ACGT	2 cut(s)	549, 1374
HspAI	GCGC	2 cut(s)	130, 1170
KroI	GCCGGC	1 cut(s)	1296
KroNI	GCCGGC	1 cut(s)	1298
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	7 cut(s)	36, 165, 183, 278, 451, 601, 1229
LguI	GCTCTTC	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	1128
Lsp1109I	GCAGC	3 cut(s)	55, 750, 1112
LweI	GCATC	4 cut(s)	338, 997, 1327, 1333
MaeI	CTAG	1 cut(s)	906
MaeII	ACGT	2 cut(s)	549, 1374
MaeIII	GTNAC	1 cut(s)	1067
MalI	GATC	7 cut(s)	38, 167, 185, 280, 453, 603, 1231
MboI	GATC	7 cut(s)	36, 165, 183, 278, 451, 601, 1229
MboII	GAAGA	9 cut(s)	67, 130, 491, 517, 596, 947, 1083, 1094, 1429
MfeI	CAATTG	1 cut(s)	1173
MflI	RGATCY	2 cut(s)	278, 451
MhlI	GDGCHC	2 cut(s)	62, 497
MluCI	AATT	7 cut(s)	195, 246, 371, 694, 776, 1173, 1324
MlyI	GAGTC	5 cut(s)	552, 836, 867, 1235, 1414
MmeI	TCCRAC	2 cut(s)	586, 936
Mph1103I	ATGCAT	1 cut(s)	766
MroNI	GCCGGC	1 cut(s)	1296
MseI	TTAA	2 cut(s)	170, 1191
MslI	CAYNNNNRTG	2 cut(s)	108, 334
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	773, 1297
MspR9I	CCNGG	1 cut(s)	609
MunI	CAATTG	1 cut(s)	1173
MvaI	CCWGG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	1170
MwoI	GCNNNNNNNGC	2 cut(s)	74, 1137
NaeI	GCCGGC	1 cut(s)	1298
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	7 cut(s)	36, 165, 183, 278, 451, 601, 1229
NgoMIV	GCCGGC	1 cut(s)	1296
NlaIV	GGNNCC	1 cut(s)	1353
NmuCI	GTSAC	1 cut(s)	1067
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	2 cut(s)	664, 904
PaeI	GCATGC	1 cut(s)	904
PciSI	GCTCTTC	1 cut(s)	50
PdiI	GCCGGC	1 cut(s)	1298
PfeI	GAWTC	5 cut(s)	650, 701, 938, 993, 1145
PflMI	CCANNNNNTGG	3 cut(s)	228, 272, 568
PkrI	GCNGC	5 cut(s)	70, 73, 76, 740, 1102
PleI	GAGTC	5 cut(s)	552, 836, 867, 1235, 1414
PpsI	GAGTC	5 cut(s)	552, 836, 867, 1235, 1414
PshAI	GACNNNNGTC	1 cut(s)	877
Psp6I	CCWGG	1 cut(s)	607
PspEI	GGTNACC	1 cut(s)	1067
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	1 cut(s)	1353
PspPI	GGNCC	2 cut(s)	29, 528
PsuI	RGATCY	2 cut(s)	278, 451
RsaI	GTAC	1 cut(s)	624
RsaNI	GTAC	1 cut(s)	623
RseI	CAYNNNNRTG	2 cut(s)	108, 334
SapI	GCTCTTC	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	170, 1191
SatI	GCNGC	5 cut(s)	69, 72, 75, 739, 1101
Sau3AI	GATC	7 cut(s)	36, 165, 183, 278, 451, 601, 1229
Sau96I	GGNCC	2 cut(s)	29, 528
SchI	GAGTC	5 cut(s)	552, 836, 867, 1235, 1414
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	2 cut(s)	62, 497
SfaNI	GCATC	4 cut(s)	338, 997, 1327, 1333
SinI	GGWCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	108, 334
SmlI	CTYRAG	2 cut(s)	542, 583
SmoI	CTYRAG	2 cut(s)	542, 583
SphI	GCATGC	1 cut(s)	904
Sse9I	AATT	7 cut(s)	195, 246, 371, 694, 776, 1173, 1324
SsiI	CCGC	5 cut(s)	66, 72, 75, 1018, 1168
SspMI	CTAG	1 cut(s)	906
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	5 cut(s)	731, 813, 868, 975, 1089
TaiI	ACGT	2 cut(s)	552, 1377
TaqI	TCGA	2 cut(s)	683, 1003
TasI	AATT	7 cut(s)	195, 246, 371, 694, 776, 1173, 1324
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	2 cut(s)	74, 77
TfiI	GAWTC	5 cut(s)	650, 701, 938, 993, 1145
Tru1I	TTAA	2 cut(s)	170, 1191
Tru9I	TTAA	2 cut(s)	170, 1191
TscAI	CASTG	8 cut(s)	15, 28, 120, 403, 661, 676, 727, 736
TseFI	GTSAC	1 cut(s)	1067
TseI	GCWGC	3 cut(s)	68, 738, 1100
Tsp45I	GTSAC	1 cut(s)	1067
TspDTI	ATGAA	5 cut(s)	432, 707, 1083, 1125, 1266
TspRI	CASTG	8 cut(s)	15, 28, 120, 403, 661, 676, 727, 736
Van91I	CCANNNNNTGG	3 cut(s)	228, 272, 568
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	1 cut(s)	694
XceI	RCATGY	2 cut(s)	664, 904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1061
XspI	CTAG	1 cut(s)	906
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.