Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005747

Physical Location & Seq

Genomic Coordinates Forward (+)

4414590 .. 4419257

Gene Structure 4668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGATTGGTATTTCGGTAACGGGATCGATGACCTTGTTGTCCCAAATGATGGAGGATCTGACAGGCTTCCATCACCAGATAGCTGGTCGAAGTGGGGGATAAGTGCATCTGAGTGCTTTCAGTCCCCGAATAAATGCTATTCCATGTATCCACAATTCAGTAAAGAAGTCAACTTCAGTGGGAAAGGTTTATTAGATGAAGGTGAGATGGGAACTTCTGCTAATGACAGAGATCTATCTAGCAGTTCAAGTGTTTGTGAAGGATTGTCTGATGACTCTCTTCAGAAGACCTCACTTTCTTACAATCGGACCTACAATCAACTTGAGGACCTAGCAGGACTCCAACAGATGGATGACATATTCTTGAGTTCCTTACTTGATGATCTTCCTGGGGTAGAAAATGTACATAAATCGTTCTTTTTCCGTTCTGATTCCAGTGGCATGTTAGCGAGTGATAGTATTTCGACAAGCATGAATTTGGAAACACAAAGTATTTCAAGCAGTGTTCACAGTGCTGGCAGCTCAAAATATCTCAAAACTCATGCATTTTCACCGGAATTGGGTTCAGAGAAGGGGCATACCACTATCTCACATATCAGTCCCTGCAACTCAGAGCGTAATGACTGCTCACCAATAAAGGCACAGACAGATAAACTCATGCTTCCAACTGAGCAAGGGTGCATGCATGGTGGTGCGGATGATGAAACATCAGTTGAAGAATCTGTATTGCAGGAGCTGGAAATGGTGATGACACAGTTGACTGAAAAGACCCGAATCTGTTTTCGAGATGCTTTGTATCGTCTTGCTGATAACTCAAAAGGGAATCATGTTACACAGAGCCAGGACAGAGACCTTGCCATTGAGAAACCGTCTTCATGGGCAGACCATGATGAAACAACAAGGTCTGGAAGCAAGAAAGTCACAGAATCAGAGACAAACACCATTGACCGAGCAATTGCGAACCTCATGTTTAATGAGATTGACTTCAATGCACAAGACCTCTCTGGAGGATCATCATCAGACTCCAAACATGAATTCAATGGAGCTTCTGGGCAACAACTATCTGAAAATTCCTACCGGCCGGAAGTCTCTCATTCGCATCACAATTCAGTTTTGCCACATGATGCTGAAGTTCCAACACTTGGTCAAAGAGACATGCATAAAAATTTCACAATAAATGCTGGTGGAAAGAGGAAGACTCCAATGACGGAGTTTGGCTCTGCGACCGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

412

Amino Acids

45.12

Weight (kDa)

4.74

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12320 AT3G12320 AT3G12320 AT5G06980 AT5G06980 AT5G06980 AT5G06980 AT5G06980
fragaria_vesca	FvH4_7g03880 FvH4_7g03880 FvH4_7g03880 FvH4_7g03880
malus_domestica	MD07G1043900.v1.1
prunus_persica	Prupe.2G043600_v2.0.a1
pyrus_communis	pycom02g23690 pycom07g03150
rosa_chinensis	RchiOBHm_Chr1g0327331
rosa_laevigata	RLG00000029998
rosa_multiflora	Rmu_sc0003600.1_g000038
rosa_roxburghii	Rroxscaffold_4G00322750
rosa_rugosa	Rorug01G0066400 Rorug01G0066500 Rorug01G0066600
rosa_samantha	Rh1AG083300 Rh1BG066200 Rh1CG081200 Rh1DG087600
rosa_wichuraiana	Rw1G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccB7I	CCANNNNNTGG	3 cut(s)	50, 349, 1142
AciI	CCGC	1 cut(s)	695
AclWI	GGATC	3 cut(s)	32, 64, 1018
AcoI	YGGCCR	1 cut(s)	1079
AcsI	RAATTY	4 cut(s)	475, 1034, 1069, 1165
AcuI	CTGAAG	3 cut(s)	160, 266, 1149
AfaI	GTAC	1 cut(s)	405
AfiI	CCNNNNNNNGG	4 cut(s)	50, 349, 560, 1142
AgsI	TTSAA	5 cut(s)	249, 498, 716, 988, 1039
AjnI	CCWGG	2 cut(s)	388, 840
AjuI	GAANNNNNNNTTGG	2 cut(s)	1019, 1051
AluBI	AGCT	4 cut(s)	84, 522, 736, 1046
AluI	AGCT	4 cut(s)	84, 522, 736, 1046
Alw26I	GTCTC	4 cut(s)	843, 926, 1093, 1146
AlwI	GGATC	3 cut(s)	32, 64, 1018
AlwNI	CAGNNNCTG	2 cut(s)	603, 736
AoxI	GGCC	1 cut(s)	1079
ApeKI	GCWGC	1 cut(s)	519
ApoI	RAATTY	4 cut(s)	475, 1034, 1069, 1165
AspS9I	GGNCC	2 cut(s)	309, 328
AsuHPI	GGTGA	5 cut(s)	66, 215, 543, 621, 757
AvaII	GGWCC	2 cut(s)	309, 328
BbsI	GAAGAC	3 cut(s)	293, 864, 1202
BbvI	GCAGC	1 cut(s)	531
BccI	CCATC	4 cut(s)	44, 79, 202, 343
BciT130I	CCWGG	2 cut(s)	390, 842
BciVI	GTATCC	1 cut(s)	159
BcoDI	GTCTC	4 cut(s)	843, 926, 1093, 1146
BfaI	CTAG	2 cut(s)	240, 332
BfuI	GTATCC	1 cut(s)	159
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	1 cut(s)	520
BlsI	GCNGC	1 cut(s)	521
Bme1390I	CCNGG	2 cut(s)	390, 842
Bme18I	GGWCC	2 cut(s)	309, 328
BmgT120I	GGNCC	2 cut(s)	309, 328
BmrFI	CCNGG	2 cut(s)	390, 842
BmsI	GCATC	4 cut(s)	116, 778, 1108, 1114
BpiI	GAAGAC	3 cut(s)	293, 864, 1202
BplI	GAGNNNNNCTC	4 cut(s)	1183, 1215, 1202, 1234
BpmI	CTGGAG	1 cut(s)	1026
BpuEI	CTTGAG	2 cut(s)	344, 385
Bsa29I	ATCGAT	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	1015
BsaI	GGTCTC	1 cut(s)	843
BsaJI	CCNNGG	1 cut(s)	389
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 349, 560, 1142
Bse118I	RCCGGY	1 cut(s)	1077
Bse1I	ACTGG	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	1015
BseBI	CCWGG	2 cut(s)	390, 842
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	389
BseGI	GGATG	2 cut(s)	358, 703
BseJI	GATNNNNATC	1 cut(s)	1015
BseLI	CCNNNNNNNGG	4 cut(s)	50, 349, 560, 1142
BseMII	CTCAG	3 cut(s)	102, 624, 660
BseNI	ACTGG	1 cut(s)	435
BseX3I	CGGCCG	1 cut(s)	1079
BseXI	GCAGC	1 cut(s)	531
Bsh1285I	CGRYCG	2 cut(s)	1082, 1227
BshFI	GGCC	1 cut(s)	1081
BshVI	ATCGAT	1 cut(s)	27
BsiEI	CGRYCG	2 cut(s)	1082, 1227
BsiSI	CCGG	3 cut(s)	554, 1078, 1082
BslFI	GGGAC	3 cut(s)	26, 109, 585
BslI	CCNNNNNNNGG	4 cut(s)	50, 349, 560, 1142
BsmAI	GTCTC	4 cut(s)	843, 926, 1093, 1146
BsmFI	GGGAC	3 cut(s)	26, 109, 585
BsnI	GGCC	1 cut(s)	1081
Bso31I	GGTCTC	1 cut(s)	843
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	5 cut(s)	24, 56, 232, 382, 1010
BspACI	CCGC	1 cut(s)	695
BspANI	GGCC	1 cut(s)	1081
BspCNI	CTCAG	3 cut(s)	103, 623, 661
BspDI	ATCGAT	1 cut(s)	27
BspPI	GGATC	3 cut(s)	32, 64, 1018
BspTNI	GGTCTC	1 cut(s)	843
BsrFI	RCCGGY	1 cut(s)	1077
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	1 cut(s)	435
BssAI	RCCGGY	1 cut(s)	1077
BssECI	CCNNGG	1 cut(s)	389
BssMI	GATC	5 cut(s)	24, 56, 232, 382, 1010
Bst2UI	CCWGG	2 cut(s)	390, 842
Bst4CI	ACNGT	3 cut(s)	512, 756, 870
Bst6I	CTCTTC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	517, 683
BstDEI	CTNAG	3 cut(s)	111, 610, 669
BstF5I	GGATG	2 cut(s)	358, 703
BstKTI	GATC	5 cut(s)	27, 59, 235, 385, 1013
BstMAI	GTCTC	4 cut(s)	843, 926, 1093, 1146
BstMBI	GATC	5 cut(s)	24, 56, 232, 382, 1010
BstMCI	CGRYCG	2 cut(s)	1082, 1227
BstNI	CCWGG	2 cut(s)	390, 842
BstNSI	RCATGY	3 cut(s)	445, 685, 1159
BstSCI	CCNGG	2 cut(s)	388, 840
BstV1I	GCAGC	1 cut(s)	531
BstV2I	GAAGAC	3 cut(s)	293, 864, 1202
BstX2I	RGATCY	2 cut(s)	56, 232
BstXI	CCANNNNNNTGG	1 cut(s)	84
BstYI	RGATCY	2 cut(s)	56, 232
BstZI	CGGCCG	1 cut(s)	1079
Bsu15I	ATCGAT	1 cut(s)	27
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	1 cut(s)	1081
BsuTUI	ATCGAT	1 cut(s)	27
BtsCI	GGATG	2 cut(s)	358, 703
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	4 cut(s)	184, 442, 508, 517
Cac8I	GCNNGC	2 cut(s)	517, 683
CaiI	CAGNNNCTG	2 cut(s)	603, 736
Cfr10I	RCCGGY	1 cut(s)	1077
Cfr13I	GGNCC	2 cut(s)	309, 328
ClaI	ATCGAT	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	404
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviJI	RGCY	8 cut(s)	67, 84, 522, 736, 840, 1046, 1081, 1218
CviKI_1	RGCY	8 cut(s)	67, 84, 522, 736, 840, 1046, 1081, 1218
CviQI	GTAC	1 cut(s)	404
DdeI	CTNAG	3 cut(s)	111, 610, 669
DpnI	GATC	5 cut(s)	26, 58, 234, 384, 1012
DpnII	GATC	5 cut(s)	24, 56, 232, 382, 1010
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
EaeI	YGGCCR	1 cut(s)	1079
EagI	CGGCCG	1 cut(s)	1079
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EclXI	CGGCCG	1 cut(s)	1079
Eco31I	GGTCTC	1 cut(s)	843
Eco47I	GGWCC	2 cut(s)	309, 328
Eco52I	CGGCCG	1 cut(s)	1079
Eco57I	CTGAAG	3 cut(s)	160, 266, 1149
EcoO109I	RGGNCCY	1 cut(s)	328
EcoRI	GAATTC	1 cut(s)	1034
EcoRII	CCWGG	2 cut(s)	388, 840
EcoT22I	ATGCAT	3 cut(s)	547, 687, 1161
FaqI	GGGAC	3 cut(s)	26, 109, 585
Fnu4HI	GCNGC	1 cut(s)	520
FokI	GGATG	2 cut(s)	365, 710
Fsp4HI	GCNGC	1 cut(s)	520
FspBI	CTAG	2 cut(s)	240, 332
GluI	GCNGC	1 cut(s)	520
GsuI	CTGGAG	1 cut(s)	1026
HaeIII	GGCC	1 cut(s)	1081
HapII	CCGG	3 cut(s)	554, 1078, 1082
HincII	GTYRAC	2 cut(s)	172, 759
HindII	GTYRAC	2 cut(s)	172, 759
HinfI	GANTC	9 cut(s)	275, 339, 431, 719, 774, 823, 926, 1022, 1198
HpaII	CCGG	3 cut(s)	554, 1078, 1082
HphI	GGTGA	5 cut(s)	66, 215, 543, 621, 757
Hpy166II	GTNNAC	3 cut(s)	172, 508, 759
Hpy188III	TCNNGA	4 cut(s)	364, 785, 906, 1005
Hpy8I	GTNNAC	3 cut(s)	172, 508, 759
HpyAV	CCTTC	3 cut(s)	194, 254, 565
HpyCH4III	ACNGT	3 cut(s)	512, 756, 870
HpyCH4V	TGCA	8 cut(s)	107, 545, 606, 681, 685, 730, 992, 1159
HpyF3I	CTNAG	3 cut(s)	111, 610, 669
Kzo9I	GATC	5 cut(s)	24, 56, 232, 382, 1010
LmnI	GCTCC	2 cut(s)	733, 1043
Lsp1109I	GCAGC	1 cut(s)	531
LweI	GCATC	4 cut(s)	116, 778, 1108, 1114
MaeI	CTAG	2 cut(s)	240, 332
MaeIII	GTNAC	3 cut(s)	17, 829, 919
MalI	GATC	5 cut(s)	26, 58, 234, 384, 1012
MboI	GATC	5 cut(s)	24, 56, 232, 382, 1010
MboII	GAAGA	6 cut(s)	272, 298, 377, 728, 864, 1207
MfeI	CAATTG	1 cut(s)	954
MflI	RGATCY	2 cut(s)	56, 232
MluCI	AATT	8 cut(s)	155, 475, 557, 954, 1034, 1069, 1105, 1165
MlyI	GAGTC	4 cut(s)	269, 333, 1016, 1192
MmeI	TCCRAC	3 cut(s)	367, 689, 1160
MnlI	CCTC	7 cut(s)	47, 301, 319, 974, 1001, 1010, 1185
Mph1103I	ATGCAT	3 cut(s)	547, 687, 1161
MseI	TTAA	1 cut(s)	972
MslI	CAYNNNNRTG	2 cut(s)	112, 690
MspI	CCGG	3 cut(s)	554, 1078, 1082
MspR9I	CCNGG	2 cut(s)	390, 842
MunI	CAATTG	1 cut(s)	954
MvaI	CCWGG	2 cut(s)	390, 842
NdeII	GATC	5 cut(s)	24, 56, 232, 382, 1010
NmuCI	GTSAC	1 cut(s)	919
NsiI	ATGCAT	3 cut(s)	547, 687, 1161
NspI	RCATGY	3 cut(s)	445, 685, 1159
PaeI	GCATGC	1 cut(s)	685
PfeI	GAWTC	5 cut(s)	431, 719, 774, 823, 926
PflMI	CCANNNNNTGG	3 cut(s)	50, 349, 1142
PkrI	GCNGC	1 cut(s)	521
PleI	GAGTC	4 cut(s)	269, 333, 1016, 1192
PpsI	GAGTC	4 cut(s)	269, 333, 1016, 1192
PpuMI	RGGWCCY	1 cut(s)	328
Psp5II	RGGWCCY	1 cut(s)	328
Psp6I	CCWGG	2 cut(s)	388, 840
PspGI	CCWGG	2 cut(s)	388, 840
PspPI	GGNCC	2 cut(s)	309, 328
PspPPI	RGGWCCY	1 cut(s)	328
PstNI	CAGNNNCTG	2 cut(s)	603, 736
PsuI	RGATCY	2 cut(s)	56, 232
RsaI	GTAC	1 cut(s)	405
RsaNI	GTAC	1 cut(s)	404
RseI	CAYNNNNRTG	2 cut(s)	112, 690
SaqAI	TTAA	1 cut(s)	972
SatI	GCNGC	1 cut(s)	520
Sau3AI	GATC	5 cut(s)	24, 56, 232, 382, 1010
Sau96I	GGNCC	2 cut(s)	309, 328
SchI	GAGTC	4 cut(s)	269, 333, 1016, 1192
ScrFI	CCNGG	2 cut(s)	390, 842
SfaNI	GCATC	4 cut(s)	116, 778, 1108, 1114
SinI	GGWCC	2 cut(s)	309, 328
SmiMI	CAYNNNNRTG	2 cut(s)	112, 690
SmlI	CTYRAG	2 cut(s)	323, 364
SmoI	CTYRAG	2 cut(s)	323, 364
SphI	GCATGC	1 cut(s)	685
Sse9I	AATT	8 cut(s)	155, 475, 557, 954, 1034, 1069, 1105, 1165
SsiI	CCGC	1 cut(s)	695
SspMI	CTAG	2 cut(s)	240, 332
StyD4I	CCNGG	2 cut(s)	388, 840
TaaI	ACNGT	3 cut(s)	512, 756, 870
TaqI	TCGA	4 cut(s)	27, 89, 464, 784
TaqII	GACCGA	1 cut(s)	963
TasI	AATT	8 cut(s)	155, 475, 557, 954, 1034, 1069, 1105, 1165
TatI	WGTACW	1 cut(s)	403
TfiI	GAWTC	5 cut(s)	431, 719, 774, 823, 926
Tru1I	TTAA	1 cut(s)	972
Tru9I	TTAA	1 cut(s)	972
TscAI	CASTG	4 cut(s)	184, 442, 508, 517
TseFI	GTSAC	1 cut(s)	919
TseI	GCWGC	1 cut(s)	519
Tsp45I	GTSAC	1 cut(s)	919
TspDTI	ATGAA	6 cut(s)	213, 488, 717, 864, 906, 1047
TspGWI	ACGGA	2 cut(s)	413, 1223
TspRI	CASTG	4 cut(s)	184, 442, 508, 517
Van91I	CCANNNNNTGG	3 cut(s)	50, 349, 1142
VpaK11BI	GGWCC	2 cut(s)	309, 328
XapI	RAATTY	4 cut(s)	475, 1034, 1069, 1165
XceI	RCATGY	3 cut(s)	445, 685, 1159
XspI	CTAG	2 cut(s)	240, 332
Zsp2I	ATGCAT	3 cut(s)	547, 687, 1161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.