Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005747

Physical Location & Seq

Genomic Coordinates Reverse (-)

53220254 .. 53224478

Gene Structure 4225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGATTGGTATTTTGGGAATGGAATTGATGACCTTGTTGTTCCAAATGATGGAGGATCTGACAGGCTTCCATCACCAGATAGCTGGTCAAAATGGGGAATAAGTGCATCTGAGTGCTTTCCTAATAAATGCTTTTCCATGTATCCACAATTCAATAAAGAACTCAACATCAGCAGTGGAAAAGGTTTATTTGATGAAGGTGAGATGGGAGCTTCTGCTAATGACAGAGATCTATCTAGCAGTTCAAGTGTTTGTGAAGGATTGTCTGAGGACTCTCTTCAGAAGACCTCACTTTCCTACAATCGGGCCTACAATCAACTTGAGGACCTAGCAGGACTCCAACAGATGGATGACATTTTCTTGTACAAGCTTGTGGGATCACATGAAAACCAATGGAAATTGAATTGCTCCGTTGTGAGTTCCTTACTCGATGATCTTCCTGGGGCAGAAAATGTACATAAATCGTTCTATTTTCGCTCTGATTCCAGTGGCATGTTAGCCAGTGATAGTATCTCGACAAGTATGAATTTGGAATCACAAAGTATTTCAAGCAGTGTTCACAGTGCTGGCAGCTCAAAGTATCTCAAAACTCATGCATTTTCACCGGAATTGGGTTCAGAGAAGGGGCATACCACTACTTCACAGTTCAGTCCATGCAACTCAGAGCAAAAAGACTCTCCACCAGTAAAGGCACAGACAGTTAGACTCATGTCTCCATCTGAGCAAGGGTGCATGCCTAGTGGTGTGGATGAGGAAACATCAGTTGAAGAATCTGTATTGCAGGAGCTGGAAATGGTGATGACACAGTTGACCAAAAAGACCCGAATCTGTTTTCGAGATGCTTTATACCGCCTTGCCGATAACTCAAAAGGAAATCCAGTTTCCCAGAGCCAAGATGGAGACCTTGCTGTTGAAGAACTGTCTTCATGGGCAGCATATGATGAAACAACGAGGTCTGGGAGCAAGGAAGGCACAGAATCAGAGACAAACACCATTGACCGCGCAATTGCAAACCTCATGTTTAATGAGATAGACTTCAATGCACAAGACCTTTCTGGAGGATCATCATCAGACTCCAAACATGAAATCAATGGAGTGTCTGGTCAACAACAATCTGACAACCCCTGCCGGCTACAAATCTCTCATTTGCATCGCAATTCAGTTTTACCACATGATGCTGAAGTTCCTATACTTGGTGAAAGAGACGTGCATGGAAAGAGGAAGACTCCAATGAGTGAGTTTGGGTCTGCAACTGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

420

Amino Acids

45.94

Weight (kDa)

4.62

Isoelectric Point (pI)

56.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12320 AT3G12320 AT3G12320 AT5G06980 AT5G06980 AT5G06980 AT5G06980 AT5G06980
fragaria_vesca	FvH4_7g03880 FvH4_7g03880 FvH4_7g03880 FvH4_7g03880
malus_domestica	MD07G1043900.v1.1
prunus_persica	Prupe.2G043600_v2.0.a1
pyrus_communis	pycom02g23690 pycom07g03150
rosa_chinensis	RchiOBHm_Chr1g0327331
rosa_laevigata	RLG00000029998
rosa_multiflora	Rmu_sc0003600.1_g000038
rosa_roxburghii	Rroxscaffold_4G00322750
rosa_rugosa	Rorug01G0066400 Rorug01G0066500 Rorug01G0066600
rosa_samantha	Rh1AG083300 Rh1BG066200 Rh1CG081200 Rh1DG087600
rosa_wichuraiana	Rw1G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	50, 346
AccII	CGCG	1 cut(s)	1002
AciI	CCGC	2 cut(s)	850, 1000
AclWI	GGATC	3 cut(s)	64, 385, 1069
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	2 cut(s)	263, 1200
AfaI	GTAC	2 cut(s)	365, 456
AfiI	CCNNNNNNNGG	5 cut(s)	50, 303, 346, 611, 1193
AgsI	TTSAA	7 cut(s)	154, 246, 403, 549, 767, 914, 1039
AjiI	CACGTC	1 cut(s)	1207
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	5 cut(s)	84, 212, 370, 573, 787
AluI	AGCT	5 cut(s)	84, 212, 370, 573, 787
Alw26I	GTCTC	4 cut(s)	717, 894, 977, 1197
AlwI	GGATC	3 cut(s)	64, 385, 1069
AlwNI	CAGNNNCTG	1 cut(s)	787
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	570, 932
ApoI	RAATTY	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	1004
AspS9I	GGNCC	2 cut(s)	306, 325
AsuHPI	GGTGA	5 cut(s)	66, 212, 594, 808, 1208
AvaII	GGWCC	1 cut(s)	325
BarI	GAAGNNNNNNTAC	2 cut(s)	1173, 1205
BbsI	GAAGAC	3 cut(s)	290, 915, 1229
BbvI	GCAGC	2 cut(s)	582, 944
BccI	CCATC	6 cut(s)	44, 79, 199, 340, 724, 890
BciT130I	CCWGG	1 cut(s)	441
BciVI	GTATCC	1 cut(s)	153
BcoDI	GTCTC	4 cut(s)	717, 894, 977, 1197
BfaI	CTAG	3 cut(s)	237, 329, 738
BfuI	GTATCC	1 cut(s)	153
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	2 cut(s)	571, 933
BlsI	GCNGC	2 cut(s)	572, 934
Bme1390I	CCNGG	1 cut(s)	441
Bme18I	GGWCC	1 cut(s)	325
BmgBI	CACGTC	1 cut(s)	1207
BmgT120I	GGNCC	2 cut(s)	306, 325
BmrFI	CCNGG	1 cut(s)	441
BmsI	GCATC	4 cut(s)	116, 829, 1159, 1165
BoxI	GACNNNNGTC	1 cut(s)	709
BpiI	GAAGAC	3 cut(s)	290, 915, 1229
BplI	GAGNNNNNCTC	2 cut(s)	1210, 1242
BpmI	CTGGAG	1 cut(s)	1077
BpuEI	CTTGAG	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	1066
BsaI	GGTCTC	1 cut(s)	894
BsaJI	CCNNGG	1 cut(s)	440
BsaWI	WCCGGW	1 cut(s)	604
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 303, 346, 611, 1193
Bse118I	RCCGGY	1 cut(s)	1128
Bse1I	ACTGG	4 cut(s)	486, 501, 683, 878
Bse8I	GATNNNNATC	1 cut(s)	1066
BseBI	CCWGG	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	440
BseGI	GGATG	2 cut(s)	355, 754
BseJI	GATNNNNATC	1 cut(s)	1066
BseLI	CCNNNNNNNGG	5 cut(s)	50, 303, 346, 611, 1193
BseMII	CTCAG	5 cut(s)	102, 258, 675, 711, 1245
BseNI	ACTGG	4 cut(s)	486, 501, 683, 878
BseXI	GCAGC	2 cut(s)	582, 944
Bsh1236I	CGCG	1 cut(s)	1002
BshFI	GGCC	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	605, 1129
BslI	CCNNNNNNNGG	5 cut(s)	50, 303, 346, 611, 1193
BsmAI	GTCTC	4 cut(s)	717, 894, 977, 1197
BsmBI	CGTCTC	1 cut(s)	1197
BsnI	GGCC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	894
Bsp1407I	TGTACA	2 cut(s)	363, 454
Bsp143I	GATC	5 cut(s)	56, 229, 377, 433, 1061
BspACI	CCGC	2 cut(s)	850, 1000
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	5 cut(s)	103, 259, 674, 712, 1246
BspFNI	CGCG	1 cut(s)	1002
BspPI	GGATC	3 cut(s)	64, 385, 1069
BspTNI	GGTCTC	1 cut(s)	894
BsrFI	RCCGGY	1 cut(s)	1128
BsrGI	TGTACA	2 cut(s)	363, 454
BsrI	ACTGG	4 cut(s)	486, 501, 683, 878
BssAI	RCCGGY	1 cut(s)	1128
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	5 cut(s)	56, 229, 377, 433, 1061
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	5 cut(s)	563, 645, 700, 807, 921
Bst6I	CTCTTC	1 cut(s)	282
BstAUI	TGTACA	2 cut(s)	363, 454
BstC8I	GCNNGC	3 cut(s)	568, 734, 1130
BstDEI	CTNAG	5 cut(s)	111, 267, 661, 720, 1254
BstF5I	GGATG	2 cut(s)	355, 754
BstFNI	CGCG	1 cut(s)	1002
BstHHI	GCGC	1 cut(s)	1004
BstKTI	GATC	5 cut(s)	59, 232, 380, 436, 1064
BstMAI	GTCTC	4 cut(s)	717, 894, 977, 1197
BstMBI	GATC	5 cut(s)	56, 229, 377, 433, 1061
BstMWI	GCNNNNNNNGC	1 cut(s)	969
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	2 cut(s)	496, 736
BstPAI	GACNNNNGTC	1 cut(s)	709
BstSCI	CCNGG	1 cut(s)	439
BstUI	CGCG	1 cut(s)	1002
BstV1I	GCAGC	2 cut(s)	582, 944
BstV2I	GAAGAC	3 cut(s)	290, 915, 1229
BstX2I	RGATCY	2 cut(s)	56, 229
BstXI	CCANNNNNNTGG	1 cut(s)	84
BstYI	RGATCY	2 cut(s)	56, 229
BsuI	GTATCC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	1136
BtrI	CACGTC	1 cut(s)	1207
BtsCI	GGATG	2 cut(s)	355, 754
BtsI	GCAGTG	2 cut(s)	181, 559
BtsIMutI	CAGTG	5 cut(s)	181, 493, 508, 559, 568
Cac8I	GCNNGC	3 cut(s)	568, 734, 1130
CaiI	CAGNNNCTG	1 cut(s)	787
CfoI	GCGC	1 cut(s)	1004
Cfr10I	RCCGGY	1 cut(s)	1128
Cfr13I	GGNCC	2 cut(s)	306, 325
Csp6I	GTAC	2 cut(s)	364, 455
CviQI	GTAC	2 cut(s)	364, 455
DdeI	CTNAG	5 cut(s)	111, 267, 661, 720, 1254
DpnI	GATC	5 cut(s)	58, 231, 379, 435, 1063
DpnII	GATC	5 cut(s)	56, 229, 377, 433, 1061
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	894
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	2 cut(s)	263, 1200
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	439
EcoT22I	ATGCAT	1 cut(s)	598
Esp3I	CGTCTC	1 cut(s)	1197
FauNDI	CATATG	1 cut(s)	937
Fnu4HI	GCNGC	2 cut(s)	571, 933
FokI	GGATG	2 cut(s)	362, 761
Fsp4HI	GCNGC	2 cut(s)	571, 933
FspBI	CTAG	3 cut(s)	237, 329, 738
GlaI	GCGC	1 cut(s)	1003
GluI	GCNGC	2 cut(s)	571, 933
GsuI	CTGGAG	1 cut(s)	1077
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	2 cut(s)	605, 1129
HhaI	GCGC	1 cut(s)	1004
Hin6I	GCGC	1 cut(s)	1002
HinP1I	GCGC	1 cut(s)	1002
HincII	GTYRAC	2 cut(s)	810, 1106
HindII	GTYRAC	2 cut(s)	810, 1106
HindIII	AAGCTT	1 cut(s)	368
HpaII	CCGG	2 cut(s)	605, 1129
HphI	GGTGA	5 cut(s)	66, 212, 594, 808, 1208
Hpy166II	GTNNAC	3 cut(s)	559, 810, 1106
Hpy188III	TCNNGA	3 cut(s)	514, 836, 1056
Hpy8I	GTNNAC	3 cut(s)	559, 810, 1106
HpyAV	CCTTC	4 cut(s)	191, 251, 616, 962
HpyCH4III	ACNGT	5 cut(s)	563, 645, 700, 807, 921
HpyCH4IV	ACGT	1 cut(s)	1206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	969
HpyF3I	CTNAG	5 cut(s)	111, 267, 661, 720, 1254
HpySE526I	ACGT	1 cut(s)	1206
HspAI	GCGC	1 cut(s)	1002
KroI	GCCGGC	1 cut(s)	1128
KroNI	GCCGGC	1 cut(s)	1130
Kzo9I	GATC	5 cut(s)	56, 229, 377, 433, 1061
LmnI	GCTCC	4 cut(s)	209, 413, 784, 960
Lsp1109I	GCAGC	2 cut(s)	582, 944
LweI	GCATC	4 cut(s)	116, 829, 1159, 1165
MaeI	CTAG	3 cut(s)	237, 329, 738
MaeII	ACGT	1 cut(s)	1206
MalI	GATC	5 cut(s)	58, 231, 379, 435, 1063
MboI	GATC	5 cut(s)	56, 229, 377, 433, 1061
MboII	GAAGA	7 cut(s)	269, 295, 428, 779, 915, 926, 1234
MfeI	CAATTG	1 cut(s)	1005
MflI	RGATCY	2 cut(s)	56, 229
MluCI	AATT	8 cut(s)	24, 149, 398, 403, 526, 608, 1005, 1156
MlyI	GAGTC	6 cut(s)	266, 330, 668, 699, 1067, 1219
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	9 cut(s)	47, 262, 298, 316, 745, 945, 1025, 1052, 1212
Mph1103I	ATGCAT	1 cut(s)	598
MroNI	GCCGGC	1 cut(s)	1128
MseI	TTAA	1 cut(s)	1023
MslI	CAYNNNNRTG	1 cut(s)	112
MspI	CCGG	2 cut(s)	605, 1129
MspR9I	CCNGG	1 cut(s)	441
MunI	CAATTG	1 cut(s)	1005
MvaI	CCWGG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	1002
MwoI	GCNNNNNNNGC	1 cut(s)	969
NaeI	GCCGGC	1 cut(s)	1130
NdeI	CATATG	1 cut(s)	937
NdeII	GATC	5 cut(s)	56, 229, 377, 433, 1061
NgoMIV	GCCGGC	1 cut(s)	1128
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	2 cut(s)	496, 736
PaeI	GCATGC	1 cut(s)	736
PdiI	GCCGGC	1 cut(s)	1130
PfeI	GAWTC	5 cut(s)	482, 533, 770, 825, 977
PflMI	CCANNNNNTGG	2 cut(s)	50, 346
PkrI	GCNGC	2 cut(s)	572, 934
PleI	GAGTC	6 cut(s)	266, 330, 668, 699, 1067, 1219
PpsI	GAGTC	6 cut(s)	266, 330, 668, 699, 1067, 1219
PpuMI	RGGWCCY	1 cut(s)	325
PshAI	GACNNNNGTC	1 cut(s)	709
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	439
PspPI	GGNCC	2 cut(s)	306, 325
PspPPI	RGGWCCY	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	787
PsuI	RGATCY	2 cut(s)	56, 229
RsaI	GTAC	2 cut(s)	365, 456
RsaNI	GTAC	2 cut(s)	364, 455
RseI	CAYNNNNRTG	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	1023
SatI	GCNGC	2 cut(s)	571, 933
Sau3AI	GATC	5 cut(s)	56, 229, 377, 433, 1061
Sau96I	GGNCC	2 cut(s)	306, 325
SchI	GAGTC	6 cut(s)	266, 330, 668, 699, 1067, 1219
ScrFI	CCNGG	1 cut(s)	441
SfaNI	GCATC	4 cut(s)	116, 829, 1159, 1165
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	112
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SphI	GCATGC	1 cut(s)	736
Sse9I	AATT	8 cut(s)	24, 149, 398, 403, 526, 608, 1005, 1156
SsiI	CCGC	2 cut(s)	850, 1000
SspMI	CTAG	3 cut(s)	237, 329, 738
StyD4I	CCNGG	1 cut(s)	439
TaaI	ACNGT	5 cut(s)	563, 645, 700, 807, 921
TaiI	ACGT	1 cut(s)	1209
TaqI	TCGA	3 cut(s)	429, 515, 835
TasI	AATT	8 cut(s)	24, 149, 398, 403, 526, 608, 1005, 1156
TatI	WGTACW	2 cut(s)	363, 454
TfiI	GAWTC	5 cut(s)	482, 533, 770, 825, 977
Tru1I	TTAA	1 cut(s)	1023
Tru9I	TTAA	1 cut(s)	1023
TscAI	CASTG	5 cut(s)	181, 493, 508, 559, 568
TseI	GCWGC	2 cut(s)	570, 932
TspDTI	ATGAA	6 cut(s)	210, 399, 539, 915, 957, 1098
TspGWI	ACGGA	1 cut(s)	400
TspRI	CASTG	5 cut(s)	181, 493, 508, 559, 568
Van91I	CCANNNNNTGG	2 cut(s)	50, 346
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	2 cut(s)	496, 736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	893
XspI	CTAG	3 cut(s)	237, 329, 738
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.