Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005747

Physical Location & Seq

Genomic Coordinates Reverse (-)

3765951 .. 3770941

Gene Structure 4991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1043900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGAGATTAAGTCTCATGGATTTGTATTACGGAACTGGCGTTGATGATTTTGTTGTTCCAAATGATGGACAATCGGATAGGCTTCCATCACCAGACAGTTGGTCAAGATGGGGAATAAGTCCATCTGAATGTTTTCAGTCGACTAATAAATGCTTTTCAATGTATCCACAATTCAATAGAGAGCTCAACTTCAGTGGTAACAGTTTGTCTGGTGAAGCCATGATGGAAACTTCTGTTAATGAAAAAGATCTGTCGAGCAGTTCAAGTGCATGTGAAGGATTGTCCGAGGCCTCTCTTCAGCAGACCAGTCTTTCATACAATCGGGCCTGTAATCAACTTGAAGACCTAGCAGGACTCGACCAGATGGATGACATTTTCTTGAGTTCCTTACTTGATGATCTTCCTGGATCAGAAAATGCACACAAATCATTCTATTTTTGTTCTGATTCCAATGGCATGTTACCTGCTGATAGTATCTCGACAAGCATGAGTTTGGAATCACCAAGTATCTCGAGCAGTGTGCACAGTGCAGGAAATTCAATGTATCTTCAAACTCATGCCTTGTCACCAACTGTGGGTTCAGATAAAGGGGATGTCACTACTTCACAGTTTATTCAATGCAACTCGGAGCACAAAGATTGTCTTCCATTAAAGACAGCAGAAACCAGCATGATTGGACTTGGTGGTGAGGAGTCATCAGTTGAAGAGTCTGTATTACATGAACTAGAAATGGTGATGAAACAGTTGAATGAGAAGACCCGAATTTGCTTTCGAGATTCCTTGTACCGACTTGCCAATAACTCAAAAGAAAATCACGCTACACAGAGCCAAGATGGAGATGAAGCAATGGAAAATGAAAACGCTTCATCATGGACAGCCCAGGATGAAACAGTCAGGCCAGGGAGCAAGAAAAGGATGGAATCAGAGACGAACACCATTGACAGAGCCGTTGCAAACCTCATGTTTAATGAGATGGACTTTAATGCACAAGACCTTTCTGGAGGAGCATCATTGGACTCCAAACAAGAAGTCTTTGGAGCGACTGAGCAACAAACTGACAACACTTACCGGCCTCAAATCTCTCATTCACATATTCACTCGCTTTTACCACAAGATGCTGAAGTTCCAACACTAGGTGAAGGAGACATGGATGTGGTGACAGATGATCAAATGCACAGCAGTTTACCGTCATGTAATGCTCATGGGAAGCGAAAAGCTCCAATGAGGGAGTTCGAGTCTACAACTGGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

418

Amino Acids

45.78

Weight (kDa)

4.43

Isoelectric Point (pI)

52.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12320 AT3G12320 AT3G12320 AT5G06980 AT5G06980 AT5G06980 AT5G06980 AT5G06980
fragaria_vesca	FvH4_7g03880 FvH4_7g03880 FvH4_7g03880 FvH4_7g03880
malus_domestica	MD07G1043900.v1.1
prunus_persica	Prupe.2G043600_v2.0.a1
pyrus_communis	pycom02g23690 pycom07g03150
rosa_chinensis	RchiOBHm_Chr1g0327331
rosa_laevigata	RLG00000029998
rosa_multiflora	Rmu_sc0003600.1_g000038
rosa_roxburghii	Rroxscaffold_4G00322750
rosa_rugosa	Rorug01G0066400 Rorug01G0066500 Rorug01G0066600
rosa_samantha	Rh1AG083300 Rh1BG066200 Rh1CG081200 Rh1DG087600
rosa_wichuraiana	Rw1G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	472
AccB7I	CCANNNNNTGG	1 cut(s)	65
AccI	GTMKAC	2 cut(s)	140, 1238
AclWI	GGATC	1 cut(s)	415
AcsI	RAATTY	2 cut(s)	535, 762
AcuI	CTGAAG	3 cut(s)	175, 281, 1140
AdeI	CACNNNGTG	1 cut(s)	1136
AfaI	GTAC	1 cut(s)	785
AfiI	CCNNNNNNNGG	3 cut(s)	65, 575, 1133
AgsI	TTSAA	9 cut(s)	159, 175, 264, 341, 540, 551, 617, 704, 748
AhdI	GACNNNNNGTC	1 cut(s)	100
AjnI	CCWGG	3 cut(s)	403, 879, 898
AjuI	GAANNNNNNNTTGG	2 cut(s)	562, 594
AluBI	AGCT	2 cut(s)	184, 1217
AluI	AGCT	2 cut(s)	184, 1217
Alw21I	GWGCWC	3 cut(s)	186, 525, 633
Alw26I	GTCTC	3 cut(s)	17, 920, 1137
Alw44I	GTGCAC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	511
AoxI	GGCC	4 cut(s)	288, 324, 896, 1070
ApaLI	GTGCAC	1 cut(s)	521
ApoI	RAATTY	2 cut(s)	535, 762
ArsI	GACNNNNNNTTYG	2 cut(s)	1014, 1046
Asp700I	GAANNNNTTC	1 cut(s)	132
AspS9I	GGNCC	1 cut(s)	324
AsuHPI	GGTGA	8 cut(s)	81, 224, 492, 558, 698, 745, 1148, 1168
AvaI	CYCGRG	1 cut(s)	511
BaeGI	GKGCMC	1 cut(s)	525
BanII	GRGCYC	1 cut(s)	186
BbsI	GAAGAC	3 cut(s)	348, 635, 761
Bbv12I	GWGCWC	3 cut(s)	186, 525, 633
BccI	CCATC	9 cut(s)	59, 94, 102, 130, 217, 358, 827, 910, 967
BceAI	ACGGC	1 cut(s)	932
BcgI	CGANNNNNNTGC	2 cut(s)	502, 536
BciT130I	CCWGG	3 cut(s)	405, 881, 900
BciVI	GTATCC	1 cut(s)	174
BclI	TGATCA	1 cut(s)	1165
BcoDI	GTCTC	3 cut(s)	17, 920, 1137
BfaI	CTAG	3 cut(s)	347, 725, 1133
BfuAI	ACCTGC	1 cut(s)	472
BfuI	GTATCC	1 cut(s)	174
BglII	AGATCT	1 cut(s)	247
Bme1390I	CCNGG	3 cut(s)	405, 881, 900
BmeRI	GACNNNNNGTC	1 cut(s)	100
BmeT110I	CYCGRG	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	405, 881, 900
BmrI	ACTGGG	1 cut(s)	1254
BmsI	GCATC	2 cut(s)	1016, 1105
BmuI	ACTGGG	1 cut(s)	1254
BpiI	GAAGAC	3 cut(s)	348, 635, 761
BpmI	CTGGAG	1 cut(s)	1020
BpuEI	CTTGAG	1 cut(s)	400
BsaJI	CCNNGG	3 cut(s)	285, 879, 899
BsaXI	ACNNNNNCTCC	2 cut(s)	1220, 1250
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 575, 1133
Bse118I	RCCGGY	1 cut(s)	1068
Bse1I	ACTGG	3 cut(s)	40, 306, 1249
Bse3DI	GCAATG	1 cut(s)	852
BseBI	CCWGG	3 cut(s)	405, 881, 900
BseDI	CCNNGG	3 cut(s)	285, 879, 899
BseGI	GGATG	5 cut(s)	373, 598, 889, 921, 1156
BseLI	CCNNNNNNNGG	3 cut(s)	65, 575, 1133
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	1 cut(s)	1035
BseNI	ACTGG	3 cut(s)	40, 306, 1249
BseRI	GAGGAG	2 cut(s)	704, 1017
BseSI	GKGCMC	1 cut(s)	525
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	4 cut(s)	290, 326, 898, 1072
BsiHKAI	GWGCWC	3 cut(s)	186, 525, 633
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	1069
BslI	CCNNNNNNNGG	3 cut(s)	65, 575, 1133
BsmAI	GTCTC	3 cut(s)	17, 920, 1137
BsmBI	CGTCTC	1 cut(s)	920
BsnI	GGCC	4 cut(s)	290, 326, 898, 1072
BsoBI	CYCGRG	1 cut(s)	511
Bsp1286I	GDGCHC	3 cut(s)	186, 525, 633
Bsp143I	GATC	4 cut(s)	247, 397, 407, 1165
BspANI	GGCC	4 cut(s)	290, 326, 898, 1072
BspCNI	CTCAG	1 cut(s)	1036
BspMI	ACCTGC	1 cut(s)	472
BspPI	GGATC	1 cut(s)	415
BsrDI	GCAATG	1 cut(s)	852
BsrFI	RCCGGY	1 cut(s)	1068
BsrI	ACTGG	3 cut(s)	40, 306, 1249
BssAI	RCCGGY	1 cut(s)	1068
BssECI	CCNNGG	3 cut(s)	285, 879, 899
BssMI	GATC	4 cut(s)	247, 397, 407, 1165
Bst2UI	CCWGG	3 cut(s)	405, 881, 900
Bst4CI	ACNGT	8 cut(s)	98, 203, 527, 574, 609, 744, 892, 1188
Bst6I	CTCTTC	2 cut(s)	300, 699
BstDEI	CTNAG	1 cut(s)	1044
BstF5I	GGATG	5 cut(s)	373, 598, 889, 921, 1156
BstKTI	GATC	4 cut(s)	250, 400, 410, 1168
BstMAI	GTCTC	3 cut(s)	17, 920, 1137
BstMBI	GATC	4 cut(s)	247, 397, 407, 1165
BstNI	CCWGG	3 cut(s)	405, 881, 900
BstNSI	RCATGY	2 cut(s)	273, 460
BstSCI	CCNGG	3 cut(s)	403, 879, 898
BstSLI	GKGCMC	1 cut(s)	525
BstV2I	GAAGAC	3 cut(s)	348, 635, 761
BstX2I	RGATCY	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	4 cut(s)	290, 326, 898, 1072
BtsCI	GGATG	5 cut(s)	373, 598, 889, 921, 1156
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	3 cut(s)	199, 523, 532
BveI	ACCTGC	1 cut(s)	472
Cfr10I	RCCGGY	1 cut(s)	1068
Cfr13I	GGNCC	1 cut(s)	324
Csp6I	GTAC	1 cut(s)	784
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	1 cut(s)	1044
DpnI	GATC	4 cut(s)	249, 399, 409, 1167
DpnII	GATC	4 cut(s)	247, 397, 407, 1165
DraIII	CACNNNGTG	1 cut(s)	1136
DriI	GACNNNNNGTC	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	300, 699
Eam1105I	GACNNNNNGTC	1 cut(s)	100
EarI	CTCTTC	2 cut(s)	300, 699
Ecl136II	GAGCTC	1 cut(s)	184
Eco147I	AGGCCT	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	184
Eco57I	CTGAAG	3 cut(s)	175, 281, 1140
Eco88I	CYCGRG	1 cut(s)	511
EcoICRI	GAGCTC	1 cut(s)	184
EcoRII	CCWGG	3 cut(s)	403, 879, 898
EcoT38I	GRGCYC	1 cut(s)	186
Esp3I	CGTCTC	1 cut(s)	920
FalI	AAGNNNNNCTT	2 cut(s)	627, 659
FbaI	TGATCA	1 cut(s)	1165
FblI	GTMKAC	2 cut(s)	140, 1238
FokI	GGATG	5 cut(s)	380, 605, 896, 928, 1163
FriOI	GRGCYC	1 cut(s)	186
FspBI	CTAG	3 cut(s)	347, 725, 1133
GsuI	CTGGAG	1 cut(s)	1020
HaeIII	GGCC	4 cut(s)	290, 326, 898, 1072
HapII	CCGG	1 cut(s)	1069
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	9 cut(s)	354, 446, 497, 692, 707, 776, 920, 1016, 1235
HpaII	CCGG	1 cut(s)	1069
HphI	GGTGA	8 cut(s)	81, 224, 492, 558, 698, 745, 1148, 1168
Hpy166II	GTNNAC	4 cut(s)	141, 523, 1184, 1239
Hpy188I	TCNGA	8 cut(s)	76, 127, 286, 412, 445, 583, 628, 925
Hpy188III	TCNNGA	6 cut(s)	105, 379, 478, 511, 773, 999
Hpy8I	GTNNAC	4 cut(s)	141, 523, 1184, 1239
HpyAV	CCTTC	2 cut(s)	269, 1133
HpyCH4III	ACNGT	8 cut(s)	98, 203, 527, 574, 609, 744, 892, 1188
HpyCH4V	TGCA	8 cut(s)	269, 419, 523, 530, 621, 953, 986, 1174
HpyF3I	CTNAG	1 cut(s)	1044
Ksp22I	TGATCA	1 cut(s)	1165
Kzo9I	GATC	4 cut(s)	247, 397, 407, 1165
LmnI	GCTCC	5 cut(s)	628, 903, 1004, 1037, 1222
LweI	GCATC	2 cut(s)	1016, 1105
MaeI	CTAG	3 cut(s)	347, 725, 1133
MaeIII	GTNAC	5 cut(s)	197, 459, 564, 595, 1156
MalI	GATC	4 cut(s)	249, 399, 409, 1167
MboI	GATC	4 cut(s)	247, 397, 407, 1165
MboII	GAAGA	7 cut(s)	287, 353, 392, 539, 635, 716, 766
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	3 cut(s)	186, 525, 633
MluCI	AATT	3 cut(s)	170, 535, 762
MlyI	GAGTC	5 cut(s)	348, 701, 716, 1010, 1244
MmeI	TCCRAC	1 cut(s)	1151
MnlI	CCTC	7 cut(s)	280, 301, 682, 968, 995, 1083, 1218
MroXI	GAANNNNTTC	1 cut(s)	132
MseI	TTAA	5 cut(s)	8, 237, 650, 966, 981
MslI	CAYNNNNRTG	2 cut(s)	127, 1151
MspI	CCGG	1 cut(s)	1069
MspR9I	CCNGG	3 cut(s)	405, 881, 900
MvaI	CCWGG	3 cut(s)	405, 881, 900
NdeII	GATC	4 cut(s)	247, 397, 407, 1165
NmuCI	GTSAC	3 cut(s)	564, 595, 1156
NspI	RCATGY	2 cut(s)	273, 460
PaeR7I	CTCGAG	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	4 cut(s)	446, 497, 776, 920
PflMI	CCANNNNNTGG	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	403
PleI	GAGTC	5 cut(s)	348, 700, 715, 1010, 1243
PpsI	GAGTC	5 cut(s)	348, 700, 715, 1010, 1243
Psp124BI	GAGCTC	1 cut(s)	186
Psp6I	CCWGG	3 cut(s)	403, 879, 898
PspGI	CCWGG	3 cut(s)	403, 879, 898
PspPI	GGNCC	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
RseI	CAYNNNNRTG	2 cut(s)	127, 1151
SacI	GAGCTC	1 cut(s)	186
SalI	GTCGAC	1 cut(s)	139
SaqAI	TTAA	5 cut(s)	8, 237, 650, 966, 981
Sau3AI	GATC	4 cut(s)	247, 397, 407, 1165
Sau96I	GGNCC	1 cut(s)	324
SchI	GAGTC	5 cut(s)	348, 701, 716, 1010, 1244
ScrFI	CCNGG	3 cut(s)	405, 881, 900
SduI	GDGCHC	3 cut(s)	186, 525, 633
SetI	ASST	7 cut(s)	186, 348, 466, 960, 996, 1138, 1219
SfaNI	GCATC	2 cut(s)	1016, 1105
Sfr274I	CTCGAG	1 cut(s)	511
SlaI	CTCGAG	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	127, 1151
SmlI	CTYRAG	2 cut(s)	379, 511
SmoI	CTYRAG	2 cut(s)	379, 511
Sse9I	AATT	3 cut(s)	170, 535, 762
SseBI	AGGCCT	1 cut(s)	290
SspMI	CTAG	3 cut(s)	347, 725, 1133
SstI	GAGCTC	1 cut(s)	186
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	3 cut(s)	403, 879, 898
TaaI	ACNGT	8 cut(s)	98, 203, 527, 574, 609, 744, 892, 1188
TaqI	TCGA	7 cut(s)	140, 254, 357, 479, 512, 772, 1233
TasI	AATT	3 cut(s)	170, 535, 762
TfiI	GAWTC	4 cut(s)	446, 497, 776, 920
Tru1I	TTAA	5 cut(s)	8, 237, 650, 966, 981
Tru9I	TTAA	5 cut(s)	8, 237, 650, 966, 981
TscAI	CASTG	3 cut(s)	199, 523, 532
TseFI	GTSAC	3 cut(s)	564, 595, 1156
Tsp45I	GTSAC	3 cut(s)	564, 595, 1156
TspDTI	ATGAA	8 cut(s)	255, 303, 735, 752, 855, 855, 870, 900
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	3 cut(s)	199, 523, 532
Van91I	CCANNNNNTGG	1 cut(s)	65
VneI	GTGCAC	1 cut(s)	521
XapI	RAATTY	2 cut(s)	535, 762
XceI	RCATGY	2 cut(s)	273, 460
XhoI	CTCGAG	1 cut(s)	511
XmiI	GTMKAC	2 cut(s)	140, 1238
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	3 cut(s)	347, 725, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.