Rmu_sc0003600.1_g000038

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003600.1
Physical Location & Seq
Reverse (-)
153049 .. 157563
4515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003600.1_g000038.1.cds

Sequence Viewer

Length: 1566 bp
ctgtttccgactgcatcttatccctttcgtcacaataaaccaatctataccttttttatcctcgccaacttgcacccctcctgctgtcctccattccctccgcgacgtcgccacgtgtcactcgcctccaagggcatccggccacgtgtccccctgcgggaacatatccaccgcgtgtccaggttccaaatctacgcggcgggggccaccaagaacgtgaagagctcccagcctcagacgtgtgaaatgaccactcgagccacgttcctctgcggaaactgggtcttgatcactttcttaattagtccatcacaagaaaaagtctccatggattggtattttgggaatggaattgatgaccttgttgttccaaatgatggaggatctgacaggcttccatcaccagatagctggtcaaaatggggaataagtgcatctgagtactttcctaataaatgtttttccatgtatccacaattcagtaaagaactcaacttcagcagtggaaaaggtttatttgatgaaggtgagatgggaacttctgctaatgacagagatctatccagcagttcaagtgtttgtgaaggattgtctgagggctctcttcagaagacctcactttcctacaatcgggcctacaatcaacttgaggacgtagcaggactacaacagatggatgacattttcttgagttccttacttgatgatcttcctggggcagaaaatgtacataaatcgtcgttttattttcgctctgattccagtgccatgttagccagtgacagtatctcgacaagtatgaatttggaatcacaaagtatttcaagcagtgttcacagtgctggcagctcaaagtatctcaaaactcatgcattttcaccggaattgggttcagagaaggggcataccactacttcacagtttagtccatgcaactcagagcaaaaagactctccaccagtaaaggcacgaacggttagactcatgtctccatctgagcaagggtgcatgcctagtggtgtggatgaggaaacgtcagttgaagaatctgtattgcaggagctggaaatggtgatgacacagttgaccaaaaagacccgaatctgttttcgagatgctttataccgccttgccgataactcaaaaggaaatccagtttcccagagccaagatggagaccttgctgttgaagaactgtcttcatgggcggcacatgatgaaacaacgaggtctgggagcaaggaaggcacagaatcagagacaaacaccattgaccgcgcaattgcaaacctcatgtttaatgagatagacttcaatgcacaagacctttctggaggatcatcatcagactccaaacatgaaatcaatggagtgtcttgtcaacaacaatctgacaacccctgccggctgcaaatctctcattcgcatcgcaattcagttttaccacatgatgctgaggttcctatacttggtcaaagagacgtgcataaaagtttctcaacaagtaatgctggtggaaagaggaagactccaatgagtgagtttgggtctgcaactgagttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

521

Amino Acids

57.33

Weight (kDa)

5.57

Isoelectric Point (pI)

59.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 109
AccB7I CCANNNNNTGG 2 cut(s) 333, 377
AccII CGCG 4 cut(s) 103, 174, 197, 1278
AciI CCGC 9 cut(s) 101, 157, 172, 197, 200, 273, 1126, 1208, 1276
AclWI GGATC 2 cut(s) 391, 1345
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 2 cut(s) 481, 590
AcvI CACGTG 2 cut(s) 115, 146
AcyI GRCGYC 1 cut(s) 106
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 2 cut(s) 443, 729
AfiI CCNNNNNNNGG 6 cut(s) 157, 333, 377, 630, 887, 1469
AflIII ACRYGT 3 cut(s) 114, 145, 239
AgsI TTSAA 5 cut(s) 573, 825, 1043, 1190, 1315
AjiI CACGTC 2 cut(s) 240, 1483
AjnI CCWGG 2 cut(s) 179, 712
AluBI AGCT 4 cut(s) 225, 411, 849, 1063
AluI AGCT 4 cut(s) 225, 411, 849, 1063
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 5 cut(s) 328, 993, 1170, 1253, 1473
AlwI GGATC 2 cut(s) 391, 1345
AlwNI CAGNNNCTG 1 cut(s) 1063
Ama87I CYCGRG 1 cut(s) 255
AoxI GGCC 3 cut(s) 140, 204, 633
ApeKI GCWGC 2 cut(s) 846, 1408
ApoI RAATTY 1 cut(s) 802
AspLEI GCGC 1 cut(s) 1280
AspS9I GGNCC 2 cut(s) 204, 633
AsuHPI GGTGA 4 cut(s) 393, 539, 870, 1084
AvaI CYCGRG 1 cut(s) 255
BanII GRGCYC 2 cut(s) 227, 602
BbrPI CACGTG 2 cut(s) 115, 146
BbsI GAAGAC 3 cut(s) 617, 1191, 1532
Bbv12I GWGCWC 1 cut(s) 227
BbvCI CCTCAGC 1 cut(s) 1455
BbvI GCAGC 2 cut(s) 858, 1395
BccI CCATC 7 cut(s) 316, 371, 406, 526, 667, 1000, 1166
BciT130I CCWGG 2 cut(s) 181, 714
BciVI GTATCC 1 cut(s) 480
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 5 cut(s) 328, 993, 1170, 1253, 1473
BfaI CTAG 1 cut(s) 1014
BfuI GTATCC 1 cut(s) 480
BglII AGATCT 1 cut(s) 556
BisI GCNGC 4 cut(s) 198, 847, 1209, 1409
BlsI GCNGC 4 cut(s) 199, 848, 1210, 1410
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 2 cut(s) 181, 714
BmeT110I CYCGRG 1 cut(s) 255
BmgBI CACGTC 2 cut(s) 240, 1483
BmgT120I GGNCC 2 cut(s) 204, 633
BmiI GGNNCC 3 cut(s) 185, 205, 1461
BmrFI CCNGG 2 cut(s) 181, 714
BmrI ACTGGG 1 cut(s) 289
BmsI GCATC 6 cut(s) 23, 144, 443, 1105, 1435, 1441
BmuI ACTGGG 1 cut(s) 289
BoxI GACNNNNGTC 1 cut(s) 985
BpiI GAAGAC 3 cut(s) 617, 1191, 1532
BplI GAGNNNNNCTC 2 cut(s) 1513, 1545
BpmI CTGGAG 1 cut(s) 1353
Bpu10I CCTNAGC 1 cut(s) 1455
BpuEI CTTGAG 2 cut(s) 668, 709
BsaAI YACGTR 2 cut(s) 115, 146
BsaBI GATNNNNATC 1 cut(s) 1342
BsaHI GRCGYC 1 cut(s) 106
BsaI GGTCTC 1 cut(s) 1170
BsaJI CCNNGG 3 cut(s) 129, 327, 713
BsaWI WCCGGW 1 cut(s) 880
Bsc4I CCNNNNNNNGG 6 cut(s) 157, 333, 377, 630, 887, 1469
Bse118I RCCGGY 1 cut(s) 1404
Bse1I ACTGG 5 cut(s) 284, 762, 777, 959, 1154
Bse8I GATNNNNATC 1 cut(s) 1342
BseBI CCWGG 2 cut(s) 181, 714
BseDI CCNNGG 3 cut(s) 129, 327, 713
BseGI GGATG 3 cut(s) 135, 682, 1030
BseJI GATNNNNATC 1 cut(s) 1342
BseLI CCNNNNNNNGG 6 cut(s) 157, 333, 377, 630, 887, 1469
BseMII CTCAG 7 cut(s) 248, 429, 585, 951, 987, 1446, 1548
BseNI ACTGG 5 cut(s) 284, 762, 777, 959, 1154
BseXI GCAGC 2 cut(s) 858, 1395
BseYI CCCAGC 1 cut(s) 228
Bsh1236I CGCG 4 cut(s) 103, 174, 197, 1278
BshFI GGCC 3 cut(s) 142, 206, 635
BsiHKAI GWGCWC 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 3 cut(s) 139, 881, 1405
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 6 cut(s) 157, 333, 377, 630, 887, 1469
BsmAI GTCTC 5 cut(s) 328, 993, 1170, 1253, 1473
BsmBI CGTCTC 1 cut(s) 1473
BsmFI GGGAC 1 cut(s) 134
BsnI GGCC 3 cut(s) 142, 206, 635
Bso31I GGTCTC 1 cut(s) 1170
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 227, 602
Bsp1407I TGTACA 1 cut(s) 727
Bsp143I GATC 5 cut(s) 288, 383, 556, 706, 1337
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 9 cut(s) 101, 157, 172, 197, 200, 273, 1126, 1208, 1276
BspANI GGCC 3 cut(s) 142, 206, 635
BspCNI CTCAG 7 cut(s) 247, 430, 586, 950, 988, 1447, 1549
BspFNI CGCG 4 cut(s) 103, 174, 197, 1278
BspLI GGNNCC 3 cut(s) 185, 205, 1461
BspPI GGATC 2 cut(s) 391, 1345
BspQI GCTCTTC 1 cut(s) 215
BspTNI GGTCTC 1 cut(s) 1170
BsrFI RCCGGY 1 cut(s) 1404
BsrGI TGTACA 1 cut(s) 727
BsrI ACTGG 5 cut(s) 284, 762, 777, 959, 1154
BssAI RCCGGY 1 cut(s) 1404
BssECI CCNNGG 3 cut(s) 129, 327, 713
BssMI GATC 5 cut(s) 288, 383, 556, 706, 1337
BssNI GRCGYC 1 cut(s) 106
BssT1I CCWWGG 2 cut(s) 129, 327
Bst2UI CCWGG 2 cut(s) 181, 714
Bst4CI ACNGT 6 cut(s) 785, 839, 921, 976, 1083, 1197
Bst6I CTCTTC 2 cut(s) 215, 609
BstACI GRCGYC 1 cut(s) 106
BstAUI TGTACA 1 cut(s) 727
BstBAI YACGTR 2 cut(s) 115, 146
BstC8I GCNNGC 3 cut(s) 844, 1010, 1406
BstDEI CTNAG 7 cut(s) 234, 438, 594, 937, 996, 1455, 1557
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 3 cut(s) 135, 682, 1030
BstFNI CGCG 4 cut(s) 103, 174, 197, 1278
BstHHI GCGC 1 cut(s) 1280
BstKTI GATC 5 cut(s) 291, 386, 559, 709, 1340
BstMAI GTCTC 5 cut(s) 328, 993, 1170, 1253, 1473
BstMBI GATC 5 cut(s) 288, 383, 556, 706, 1337
BstMWI GCNNNNNNNGC 3 cut(s) 203, 773, 1245
BstNI CCWGG 2 cut(s) 181, 714
BstNSI RCATGY 1 cut(s) 1012
BstPAI GACNNNNGTC 1 cut(s) 985
BstSCI CCNGG 2 cut(s) 179, 712
BstUI CGCG 4 cut(s) 103, 174, 197, 1278
BstV1I GCAGC 2 cut(s) 858, 1395
BstV2I GAAGAC 3 cut(s) 617, 1191, 1532
BstX2I RGATCY 2 cut(s) 383, 556
BstXI CCANNNNNNTGG 1 cut(s) 411
BstYI RGATCY 2 cut(s) 383, 556
BsuI GTATCC 1 cut(s) 480
BsuRI GGCC 3 cut(s) 142, 206, 635
BtgI CCRYGG 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 1412
BtrI CACGTC 2 cut(s) 240, 1483
BtsCI GGATG 3 cut(s) 135, 682, 1030
BtsI GCAGTG 2 cut(s) 508, 835
BtsIMutI CAGTG 5 cut(s) 508, 769, 784, 835, 844
Cac8I GCNNGC 3 cut(s) 844, 1010, 1406
CaiI CAGNNNCTG 1 cut(s) 1063
CfoI GCGC 1 cut(s) 1280
Cfr10I RCCGGY 1 cut(s) 1404
Cfr13I GGNCC 2 cut(s) 204, 633
Csp6I GTAC 2 cut(s) 442, 728
CviQI GTAC 2 cut(s) 442, 728
DdeI CTNAG 7 cut(s) 234, 438, 594, 937, 996, 1455, 1557
DpnI GATC 5 cut(s) 290, 385, 558, 708, 1339
DpnII GATC 5 cut(s) 288, 383, 556, 706, 1337
DraIII CACNNNGTG 1 cut(s) 175
EaeI YGGCCR 1 cut(s) 140
Eam1104I CTCTTC 2 cut(s) 215, 609
EarI CTCTTC 2 cut(s) 215, 609
Ecl136II GAGCTC 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 129, 327
Eco24I GRGCYC 2 cut(s) 227, 602
Eco31I GGTCTC 1 cut(s) 1170
Eco53kI GAGCTC 1 cut(s) 225
Eco57I CTGAAG 2 cut(s) 481, 590
Eco72I CACGTG 2 cut(s) 115, 146
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 179, 712
EcoT14I CCWWGG 2 cut(s) 129, 327
EcoT22I ATGCAT 1 cut(s) 874
EcoT38I GRGCYC 2 cut(s) 227, 602
ErhI CCWWGG 2 cut(s) 129, 327
Esp3I CGTCTC 1 cut(s) 1473
FaqI GGGAC 1 cut(s) 134
FauI CCCGC 2 cut(s) 150, 193
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 4 cut(s) 198, 847, 1209, 1409
FokI GGATG 3 cut(s) 122, 689, 1037
FriOI GRGCYC 2 cut(s) 227, 602
Fsp4HI GCNGC 4 cut(s) 198, 847, 1209, 1409
FspBI CTAG 1 cut(s) 1014
GlaI GCGC 1 cut(s) 1279
GluI GCNGC 4 cut(s) 198, 847, 1209, 1409
GsaI CCCAGC 1 cut(s) 232
GsuI CTGGAG 1 cut(s) 1353
HaeIII GGCC 3 cut(s) 142, 206, 635
HapII CCGG 3 cut(s) 139, 881, 1405
HhaI GCGC 1 cut(s) 1280
Hin1I GRCGYC 1 cut(s) 106
Hin6I GCGC 1 cut(s) 1278
HinP1I GCGC 1 cut(s) 1278
HincII GTYRAC 2 cut(s) 1086, 1382
HindII GTYRAC 2 cut(s) 1086, 1382
HinfI GANTC 9 cut(s) 758, 809, 950, 981, 1046, 1101, 1253, 1349, 1528
HpaII CCGG 3 cut(s) 139, 881, 1405
HphI GGTGA 4 cut(s) 393, 539, 870, 1084
Hpy166II GTNNAC 3 cut(s) 835, 1086, 1382
Hpy188III TCNNGA 5 cut(s) 286, 688, 790, 1112, 1332
Hpy8I GTNNAC 3 cut(s) 835, 1086, 1382
Hpy99I CGWCG 3 cut(s) 108, 111, 742
HpyAV CCTTC 4 cut(s) 518, 578, 892, 1238
HpyCH4III ACNGT 6 cut(s) 785, 839, 921, 976, 1083, 1197
HpyCH4IV ACGT 9 cut(s) 106, 114, 145, 216, 239, 263, 654, 1034, 1482
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 773, 1245
HpyF3I CTNAG 7 cut(s) 234, 438, 594, 937, 996, 1455, 1557
HpySE526I ACGT 9 cut(s) 106, 114, 145, 216, 239, 263, 654, 1034, 1482
Hsp92I GRCGYC 1 cut(s) 106
HspAI GCGC 1 cut(s) 1278
KroI GCCGGC 1 cut(s) 1404
KroNI GCCGGC 1 cut(s) 1406
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 5 cut(s) 288, 383, 556, 706, 1337
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 3 cut(s) 230, 1060, 1236
Lsp1109I GCAGC 2 cut(s) 858, 1395
LweI GCATC 6 cut(s) 23, 144, 443, 1105, 1435, 1441
MaeI CTAG 1 cut(s) 1014
MaeII ACGT 9 cut(s) 106, 114, 145, 216, 239, 263, 654, 1034, 1482
MaeIII GTNAC 3 cut(s) 29, 117, 779
MalI GATC 5 cut(s) 290, 385, 558, 708, 1339
MboI GATC 5 cut(s) 288, 383, 556, 706, 1337
MboII GAAGA 8 cut(s) 232, 596, 622, 701, 1055, 1191, 1202, 1537
MfeI CAATTG 1 cut(s) 1281
MflI RGATCY 2 cut(s) 383, 556
MhlI GDGCHC 2 cut(s) 227, 602
MluCI AATT 7 cut(s) 300, 351, 476, 802, 884, 1281, 1432
MlyI GAGTC 4 cut(s) 944, 975, 1343, 1522
MmeI TCCRAC 1 cut(s) 32
Mph1103I ATGCAT 1 cut(s) 874
MroNI GCCGGC 1 cut(s) 1404
MseI TTAA 2 cut(s) 299, 1299
MspI CCGG 3 cut(s) 139, 881, 1405
MspR9I CCNGG 2 cut(s) 181, 714
MunI CAATTG 1 cut(s) 1281
MvaI CCWGG 2 cut(s) 181, 714
MvnI CGCG 4 cut(s) 103, 174, 197, 1278
MwoI GCNNNNNNNGC 3 cut(s) 203, 773, 1245
NaeI GCCGGC 1 cut(s) 1406
NcoI CCATGG 1 cut(s) 327
NdeII GATC 5 cut(s) 288, 383, 556, 706, 1337
NgoMIV GCCGGC 1 cut(s) 1404
NlaIV GGNNCC 3 cut(s) 185, 205, 1461
NmuCI GTSAC 3 cut(s) 29, 117, 779
NsiI ATGCAT 1 cut(s) 874
NspI RCATGY 1 cut(s) 1012
PaeI GCATGC 1 cut(s) 1012
PaeR7I CTCGAG 1 cut(s) 255
PciSI GCTCTTC 1 cut(s) 215
PdiI GCCGGC 1 cut(s) 1406
PfeI GAWTC 5 cut(s) 758, 809, 1046, 1101, 1253
PflMI CCANNNNNTGG 2 cut(s) 333, 377
PkrI GCNGC 4 cut(s) 199, 848, 1210, 1410
PleI GAGTC 4 cut(s) 944, 975, 1343, 1522
PmaCI CACGTG 2 cut(s) 115, 146
PmlI CACGTG 2 cut(s) 115, 146
PpsI GAGTC 4 cut(s) 944, 975, 1343, 1522
Ppu21I YACGTR 2 cut(s) 115, 146
PshAI GACNNNNGTC 1 cut(s) 985
Psp124BI GAGCTC 1 cut(s) 227
Psp6I CCWGG 2 cut(s) 179, 712
PspCI CACGTG 2 cut(s) 115, 146
PspFI CCCAGC 1 cut(s) 228
PspGI CCWGG 2 cut(s) 179, 712
PspN4I GGNNCC 3 cut(s) 185, 205, 1461
PspPI GGNCC 2 cut(s) 204, 633
PspXI VCTCGAGB 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 1063
PsuI RGATCY 2 cut(s) 383, 556
RsaI GTAC 2 cut(s) 443, 729
RsaNI GTAC 2 cut(s) 442, 728
SacI GAGCTC 1 cut(s) 227
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 299, 1299
SatI GCNGC 4 cut(s) 198, 847, 1209, 1409
Sau3AI GATC 5 cut(s) 288, 383, 556, 706, 1337
Sau96I GGNCC 2 cut(s) 204, 633
ScaI AGTACT 1 cut(s) 443
SchI GAGTC 4 cut(s) 944, 975, 1343, 1522
ScrFI CCNGG 2 cut(s) 181, 714
SduI GDGCHC 2 cut(s) 227, 602
SfaNI GCATC 6 cut(s) 23, 144, 443, 1105, 1435, 1441
Sfr274I CTCGAG 1 cut(s) 255
SlaI CTCGAG 1 cut(s) 255
SmlI CTYRAG 3 cut(s) 255, 647, 688
SmoI CTYRAG 3 cut(s) 255, 647, 688
SphI GCATGC 1 cut(s) 1012
Sse9I AATT 7 cut(s) 300, 351, 476, 802, 884, 1281, 1432
SsiI CCGC 9 cut(s) 101, 157, 172, 197, 200, 273, 1126, 1208, 1276
SspMI CTAG 1 cut(s) 1014
SstI GAGCTC 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 179, 712
StyI CCWWGG 2 cut(s) 129, 327
TaaI ACNGT 6 cut(s) 785, 839, 921, 976, 1083, 1197
TaiI ACGT 9 cut(s) 109, 117, 148, 219, 242, 266, 657, 1037, 1485
TaqI TCGA 3 cut(s) 256, 791, 1111
TasI AATT 7 cut(s) 300, 351, 476, 802, 884, 1281, 1432
TatI WGTACW 2 cut(s) 441, 727
TauI GCSGC 2 cut(s) 200, 1211
TfiI GAWTC 5 cut(s) 758, 809, 1046, 1101, 1253
Tru1I TTAA 2 cut(s) 299, 1299
Tru9I TTAA 2 cut(s) 299, 1299
TscAI CASTG 5 cut(s) 508, 769, 784, 835, 844
TseFI GTSAC 3 cut(s) 29, 117, 779
TseI GCWGC 2 cut(s) 846, 1408
Tsp45I GTSAC 3 cut(s) 29, 117, 779
TspDTI ATGAA 5 cut(s) 537, 815, 1191, 1233, 1374
TspRI CASTG 5 cut(s) 508, 769, 784, 835, 844
Van91I CCANNNNNTGG 2 cut(s) 333, 377
XapI RAATTY 1 cut(s) 802
XceI RCATGY 1 cut(s) 1012
XcmI CCANNNNNNNNNTGG 1 cut(s) 1169
XhoI CTCGAG 1 cut(s) 255
XspI CTAG 1 cut(s) 1014
ZraI GACGTC 1 cut(s) 107
ZrmI AGTACT 1 cut(s) 443
Zsp2I ATGCAT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.