Rh1BG066200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005747
Physical Location & Seq
Forward (+)
10088545 .. 10093279
4735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG066200.1

Sequence Viewer

Length: 954 bp
ATGGATTGGTATTTCGGGAATGGAATTGATGACCTTGTTGTTCCAAATGATGGAGGATCTGACAGGCTTCCATCACCAGATAGCTGGTCAAAATGGGGAATAAGTGCATCTGAGTACTTTCCTAATAAATGCTTTTCCATGTATCCACAATTCAATAAAGAACTCAACATCAGCAGTGGAAAAGGTTTATTTGATGAAGGTGAGATGGGAGCTTCTGCTAATGACAGAGATCTATCTAGCAGTTCAAGTATTTGTGAAGGATTGTGTGAGGACTCTCTTCAGAAGACCTCACTTTCCTACAGTCGGGCCTACAATCAACTTGAGGACCTAGCAGGACTCCAACAGATGGATGACATTTTCTTGAGTTCCTTACTTGATGATCTTCCTGGGGCAGAAAATGTACATAAATCGTTCTATTTTCGCTCTGATTCCAGTGGCATGTTAGCCAGTGATAGTATCTCGACAAGTATGAATTTGGAATCACAAAGTATTTCAAGCAGTGTTCACAGTGCTGGCAGCTCAAAGTATCTCAAAACTCATGCATTTTCTCCGGAATTGGGTTCCGAGAAGGGGCATACCACTACTTCACAGTTCAGTCCATGCAACTCAGAGCAAAAAGACTCTCCACCAGTAAAGGCACAGACAGTTAGACTCATGTCTCCATCTGAGCAAGGGTGCATGCCTAGTGGTGTGGATGAGGAAACATCAGTTGAAGAATCTGTATTGCAGGAGCTGGAAATGGTGATGACACAGTTGACCAAAAAGACCCGAATCTGTTTTCGAGATGCTTTATACCGCCTTGCCGATAACTCAAAAGGAAATCCAGTTTCCCAGAGCCAAGATGGAGACCTTGCTGTTGAAGAACTGTCTTCATGGGCAGCACATGATGAAACAACGAGGTATATTCTATGCTTTTTTTTTTCTACATTTGAATTCTGTTCCTCGGGATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

34.81

Weight (kDa)

4.42

Isoelectric Point (pI)

58.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 50, 346
AccIII TCCGGA 1 cut(s) 550
AciI CCGC 1 cut(s) 796
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 2 cut(s) 472, 932
AcuI CTGAAG 1 cut(s) 263
AfaI GTAC 2 cut(s) 116, 402
AfiI CCNNNNNNNGG 5 cut(s) 50, 303, 346, 557, 570
AgsI TTSAA 6 cut(s) 154, 246, 495, 713, 860, 932
AjnI CCWGG 1 cut(s) 385
AluBI AGCT 4 cut(s) 84, 212, 519, 733
AluI AGCT 4 cut(s) 84, 212, 519, 733
Alw26I GTCTC 2 cut(s) 663, 840
AlwI GGATC 1 cut(s) 64
AlwNI CAGNNNCTG 1 cut(s) 733
Ama87I CYCGRG 1 cut(s) 943
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 1 cut(s) 306
ApeKI GCWGC 2 cut(s) 516, 878
ApoI RAATTY 2 cut(s) 472, 932
AspS9I GGNCC 2 cut(s) 306, 325
AsuHPI GGTGA 3 cut(s) 66, 212, 754
AvaI CYCGRG 1 cut(s) 943
AvaII GGWCC 1 cut(s) 325
BbsI GAAGAC 2 cut(s) 290, 861
BbvI GCAGC 2 cut(s) 528, 890
BccI CCATC 6 cut(s) 44, 79, 199, 340, 670, 836
BciT130I CCWGG 1 cut(s) 387
BciVI GTATCC 1 cut(s) 153
BcoDI GTCTC 2 cut(s) 663, 840
BfaI CTAG 3 cut(s) 237, 329, 684
BfmI CTRYAG 1 cut(s) 298
BfuI GTATCC 1 cut(s) 153
BglII AGATCT 1 cut(s) 229
BisI GCNGC 2 cut(s) 517, 879
BlsI GCNGC 2 cut(s) 518, 880
BmcAI AGTACT 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 387
Bme18I GGWCC 1 cut(s) 325
BmeT110I CYCGRG 1 cut(s) 943
BmgT120I GGNCC 2 cut(s) 306, 325
BmiI GGNNCC 1 cut(s) 562
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 116, 775
BoxI GACNNNNGTC 1 cut(s) 655
BpiI GAAGAC 2 cut(s) 290, 861
BpuEI CTTGAG 2 cut(s) 341, 382
BsaI GGTCTC 1 cut(s) 840
BsaJI CCNNGG 2 cut(s) 386, 942
BsaWI WCCGGW 1 cut(s) 550
Bsc4I CCNNNNNNNGG 5 cut(s) 50, 303, 346, 557, 570
Bse1I ACTGG 4 cut(s) 432, 447, 629, 824
BseAI TCCGGA 1 cut(s) 550
BseBI CCWGG 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 386, 942
BseGI GGATG 2 cut(s) 355, 700
BseLI CCNNNNNNNGG 5 cut(s) 50, 303, 346, 557, 570
BseMII CTCAG 3 cut(s) 102, 621, 657
BseNI ACTGG 4 cut(s) 432, 447, 629, 824
BseXI GCAGC 2 cut(s) 528, 890
BshFI GGCC 1 cut(s) 308
BsiHKCI CYCGRG 1 cut(s) 943
BsiSI CCGG 1 cut(s) 551
BslI CCNNNNNNNGG 5 cut(s) 50, 303, 346, 557, 570
BsmAI GTCTC 2 cut(s) 663, 840
BsnI GGCC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 840
BsoBI CYCGRG 1 cut(s) 943
Bsp13I TCCGGA 1 cut(s) 550
Bsp1407I TGTACA 1 cut(s) 400
Bsp143I GATC 3 cut(s) 56, 229, 379
BspACI CCGC 1 cut(s) 796
BspANI GGCC 1 cut(s) 308
BspCNI CTCAG 3 cut(s) 103, 620, 658
BspEI TCCGGA 1 cut(s) 550
BspLI GGNNCC 1 cut(s) 562
BspPI GGATC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 840
BsrGI TGTACA 1 cut(s) 400
BsrI ACTGG 4 cut(s) 432, 447, 629, 824
BssECI CCNNGG 2 cut(s) 386, 942
BssMI GATC 3 cut(s) 56, 229, 379
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 6 cut(s) 302, 509, 591, 646, 753, 867
Bst6I CTCTTC 1 cut(s) 282
BstAUI TGTACA 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 514, 680
BstDEI CTNAG 3 cut(s) 111, 607, 666
BstF5I GGATG 2 cut(s) 355, 700
BstKTI GATC 3 cut(s) 59, 232, 382
BstMAI GTCTC 2 cut(s) 663, 840
BstMBI GATC 3 cut(s) 56, 229, 379
BstNI CCWGG 1 cut(s) 387
BstNSI RCATGY 2 cut(s) 442, 682
BstPAI GACNNNNGTC 1 cut(s) 655
BstSCI CCNGG 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 298
BstV1I GCAGC 2 cut(s) 528, 890
BstV2I GAAGAC 2 cut(s) 290, 861
BstX2I RGATCY 2 cut(s) 56, 229
BstXI CCANNNNNNTGG 1 cut(s) 84
BstYI RGATCY 2 cut(s) 56, 229
BsuI GTATCC 1 cut(s) 153
BsuRI GGCC 1 cut(s) 308
BtsCI GGATG 2 cut(s) 355, 700
BtsI GCAGTG 2 cut(s) 181, 505
BtsIMutI CAGTG 5 cut(s) 181, 439, 454, 505, 514
Cac8I GCNNGC 2 cut(s) 514, 680
CaiI CAGNNNCTG 1 cut(s) 733
Cfr13I GGNCC 2 cut(s) 306, 325
Csp6I GTAC 2 cut(s) 115, 401
CviAII CATG 8 cut(s) 139, 439, 539, 600, 655, 679, 873, 884
CviJI RGCY 8 cut(s) 67, 84, 212, 308, 446, 519, 733, 837
CviKI_1 RGCY 8 cut(s) 67, 84, 212, 308, 446, 519, 733, 837
CviQI GTAC 2 cut(s) 115, 401
DdeI CTNAG 3 cut(s) 111, 607, 666
DpnI GATC 3 cut(s) 58, 231, 381
DpnII GATC 3 cut(s) 56, 229, 379
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 840
Eco47I GGWCC 1 cut(s) 325
Eco57I CTGAAG 1 cut(s) 263
Eco88I CYCGRG 1 cut(s) 943
EcoO109I RGGNCCY 1 cut(s) 325
EcoRI GAATTC 1 cut(s) 932
EcoRII CCWGG 1 cut(s) 385
EcoT22I ATGCAT 1 cut(s) 544
FaeI CATG 8 cut(s) 142, 442, 542, 603, 658, 682, 876, 887
FatI CATG 8 cut(s) 138, 438, 538, 599, 654, 678, 872, 883
Fnu4HI GCNGC 2 cut(s) 517, 879
FokI GGATG 2 cut(s) 362, 707
Fsp4HI GCNGC 2 cut(s) 517, 879
FspBI CTAG 3 cut(s) 237, 329, 684
GluI GCNGC 2 cut(s) 517, 879
HaeIII GGCC 1 cut(s) 308
HapII CCGG 1 cut(s) 551
Hin1II CATG 8 cut(s) 142, 442, 542, 603, 658, 682, 876, 887
HincII GTYRAC 1 cut(s) 756
HindII GTYRAC 1 cut(s) 756
HinfI GANTC 8 cut(s) 272, 336, 428, 479, 620, 651, 716, 771
HpaII CCGG 1 cut(s) 551
HphI GGTGA 3 cut(s) 66, 212, 754
Hpy166II GTNNAC 2 cut(s) 505, 756
Hpy188I TCNGA 7 cut(s) 61, 112, 282, 427, 565, 610, 667
Hpy188III TCNNGA 6 cut(s) 16, 361, 460, 551, 782, 945
Hpy8I GTNNAC 2 cut(s) 505, 756
HpyAV CCTTC 3 cut(s) 191, 251, 562
HpyCH4III ACNGT 6 cut(s) 302, 509, 591, 646, 753, 867
HpyCH4V TGCA 5 cut(s) 107, 542, 603, 678, 727
HpyF3I CTNAG 3 cut(s) 111, 607, 666
Hsp92II CATG 8 cut(s) 142, 442, 542, 603, 658, 682, 876, 887
Kpn2I TCCGGA 1 cut(s) 550
Kzo9I GATC 3 cut(s) 56, 229, 379
LmnI GCTCC 2 cut(s) 209, 730
Lsp1109I GCAGC 2 cut(s) 528, 890
LweI GCATC 2 cut(s) 116, 775
MaeI CTAG 3 cut(s) 237, 329, 684
MalI GATC 3 cut(s) 58, 231, 381
MboI GATC 3 cut(s) 56, 229, 379
MboII GAAGA 6 cut(s) 269, 295, 374, 725, 861, 872
MflI RGATCY 2 cut(s) 56, 229
MluCI AATT 5 cut(s) 24, 149, 472, 554, 932
MlyI GAGTC 4 cut(s) 266, 330, 614, 645
MmeI TCCRAC 1 cut(s) 364
MnlI CCTC 7 cut(s) 47, 262, 298, 316, 691, 891, 952
Mph1103I ATGCAT 1 cut(s) 544
MroI TCCGGA 1 cut(s) 550
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 387
NdeII GATC 3 cut(s) 56, 229, 379
NlaIII CATG 8 cut(s) 142, 442, 542, 603, 658, 682, 876, 887
NlaIV GGNNCC 1 cut(s) 562
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 2 cut(s) 442, 682
PaeI GCATGC 1 cut(s) 682
PfeI GAWTC 4 cut(s) 428, 479, 716, 771
PflMI CCANNNNNTGG 2 cut(s) 50, 346
PkrI GCNGC 2 cut(s) 518, 880
PleI GAGTC 4 cut(s) 266, 330, 614, 645
PpsI GAGTC 4 cut(s) 266, 330, 614, 645
PpuMI RGGWCCY 1 cut(s) 325
PshAI GACNNNNGTC 1 cut(s) 655
Psp5II RGGWCCY 1 cut(s) 325
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 562
PspPI GGNCC 2 cut(s) 306, 325
PspPPI RGGWCCY 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 733
PsuI RGATCY 2 cut(s) 56, 229
RsaI GTAC 2 cut(s) 116, 402
RsaNI GTAC 2 cut(s) 115, 401
SatI GCNGC 2 cut(s) 517, 879
Sau3AI GATC 3 cut(s) 56, 229, 379
Sau96I GGNCC 2 cut(s) 306, 325
ScaI AGTACT 1 cut(s) 116
SchI GAGTC 4 cut(s) 266, 330, 614, 645
ScrFI CCNGG 1 cut(s) 387
SfaNI GCATC 2 cut(s) 116, 775
SfcI CTRYAG 1 cut(s) 298
SinI GGWCC 1 cut(s) 325
SmlI CTYRAG 2 cut(s) 320, 361
SmoI CTYRAG 2 cut(s) 320, 361
SphI GCATGC 1 cut(s) 682
Sse9I AATT 5 cut(s) 24, 149, 472, 554, 932
SsiI CCGC 1 cut(s) 796
SspMI CTAG 3 cut(s) 237, 329, 684
StyD4I CCNGG 1 cut(s) 385
TaaI ACNGT 6 cut(s) 302, 509, 591, 646, 753, 867
TaqI TCGA 2 cut(s) 461, 781
TasI AATT 5 cut(s) 24, 149, 472, 554, 932
TatI WGTACW 2 cut(s) 114, 400
TfiI GAWTC 4 cut(s) 428, 479, 716, 771
TscAI CASTG 5 cut(s) 181, 439, 454, 505, 514
TseI GCWGC 2 cut(s) 516, 878
TspDTI ATGAA 4 cut(s) 210, 485, 861, 903
TspRI CASTG 5 cut(s) 181, 439, 454, 505, 514
Van91I CCANNNNNTGG 2 cut(s) 50, 346
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 2 cut(s) 472, 932
XceI RCATGY 2 cut(s) 442, 682
XcmI CCANNNNNNNNNTGG 1 cut(s) 839
XspI CTAG 3 cut(s) 237, 329, 684
ZrmI AGTACT 1 cut(s) 116
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.