Rorug01G0066500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0005747
Physical Location & Seq
Forward (+)
10749755 .. 10751760
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0066500.1

Sequence Viewer

Length: 690 bp
ATGTTGGCAATGGCAACATTCACAAGCTCTGAAGGGCATTCGCAAAACTACGCGGATGCTTTGTCGAAGAGTATTTTGTTTTCCGAAGGACAGAGGTCGGAAGTTCAACTTTCCCATGGCCTTCACAACAACAATGCGATCATGGAGTGTGTTGGAGTTCTGGCAATCTTTAGATTCGGAACTCCAGCATGCAAAGGAATGGGGGACGGATACTTTCTTAAATCCACAAACGTTCCTGGTTCTGTGGTAGGCGTTGTTGGTAACCCAAATGGTGACTACACTTGTTGGGAAAGACTCGAAGACATGGACACTCCTCGAATGTCCTACATAATAACAAAACAAAATCCAGGCTCTGAAGTCTCGGCTGAAACTGCAGCCACCCCTGCAGCTTCTTCCATGGTGTTTAGAGGTTCGGACAACAGGTACTCGACTTTGCTTCTTAACCGAGCCATAGAGGTTTTCGAGTTTGCAGACAAGTATAGAGGATCTTATAACAATAGCATTCCCAATAGAGCGTGTCCGTTTTATTGCGACTACAATGGATACATGGATGAGTTGGTTTGGGGAGCTACGTGGTTGTATGATGCGCTAGAAAGCAGCACGCAATTTAACCCTGGCTTGGATGTTTGTTGCATTTTCAATAAGCGGCGCAATTTGTTCCTCGCGTATGACATATTGCGAGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.45

Weight (kDa)

5.09

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 71 - 199 5.9e-39 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 492
AccII CGCG 2 cut(s) 53, 665
AciI CCGC 2 cut(s) 53, 646
AclI AACGTT 1 cut(s) 231
AclWI GGATC 1 cut(s) 493
AcuI CTGAAG 2 cut(s) 51, 375
AfaI GTAC 1 cut(s) 425
AfiI CCNNNNNNNGG 1 cut(s) 619
AgsI TTSAA 2 cut(s) 107, 640
AjnI CCWGG 3 cut(s) 235, 346, 613
AluBI AGCT 3 cut(s) 27, 389, 569
AluI AGCT 3 cut(s) 27, 389, 569
Alw26I GTCTC 2 cut(s) 364, 675
AlwI GGATC 1 cut(s) 493
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 3 cut(s) 374, 386, 597
AspLEI GCGC 2 cut(s) 589, 651
AsuHPI GGTGA 1 cut(s) 284
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 3 cut(s) 386, 398, 609
BciT130I CCWGG 3 cut(s) 237, 348, 615
BciVI GTATCC 2 cut(s) 203, 536
BcoDI GTCTC 2 cut(s) 364, 675
BfaI CTAG 1 cut(s) 590
BfmI CTRYAG 2 cut(s) 372, 384
BfuI GTATCC 2 cut(s) 203, 536
BisI GCNGC 4 cut(s) 375, 387, 598, 647
BlsI GCNGC 4 cut(s) 376, 388, 599, 648
Bme1390I CCNGG 3 cut(s) 237, 348, 615
BmrFI CCNGG 3 cut(s) 237, 348, 615
BmsI GCATC 2 cut(s) 46, 574
BoxI GACNNNNGTC 1 cut(s) 94
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 168
BsaAI YACGTR 1 cut(s) 573
BsaJI CCNNGG 3 cut(s) 115, 396, 613
Bsc4I CCNNNNNNNGG 1 cut(s) 619
Bse3DI GCAATG 1 cut(s) 15
BseBI CCWGG 3 cut(s) 237, 348, 615
BseDI CCNNGG 3 cut(s) 115, 396, 613
BseGI GGATG 3 cut(s) 61, 556, 628
BseLI CCNNNNNNNGG 1 cut(s) 619
BseMI GCAATG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 3 cut(s) 386, 398, 609
Bsh1236I CGCG 2 cut(s) 53, 665
BshFI GGCC 1 cut(s) 120
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 619
BsmAI GTCTC 2 cut(s) 364, 675
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 2 cut(s) 37, 501
BsnI GGCC 1 cut(s) 120
Bsp143I GATC 2 cut(s) 138, 485
Bsp19I CCATGG 2 cut(s) 115, 396
BspACI CCGC 2 cut(s) 53, 646
BspANI GGCC 1 cut(s) 120
BspFNI CGCG 2 cut(s) 53, 665
BspMAI CTGCAG 2 cut(s) 376, 388
BspPI GGATC 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 15
BssECI CCNNGG 3 cut(s) 115, 396, 613
BssMI GATC 2 cut(s) 138, 485
BssT1I CCWWGG 2 cut(s) 115, 396
Bst2UI CCWGG 3 cut(s) 237, 348, 615
Bst6I CTCTTC 1 cut(s) 62
BstBAI YACGTR 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 190, 602
BstDSI CCRYGG 2 cut(s) 115, 396
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 3 cut(s) 61, 556, 628
BstFNI CGCG 2 cut(s) 53, 665
BstHHI GCGC 2 cut(s) 589, 651
BstKTI GATC 2 cut(s) 141, 488
BstMAI GTCTC 2 cut(s) 364, 675
BstMBI GATC 2 cut(s) 138, 485
BstMWI GCNNNNNNNGC 2 cut(s) 371, 383
BstNI CCWGG 3 cut(s) 237, 348, 615
BstNSI RCATGY 1 cut(s) 192
BstPAI GACNNNNGTC 1 cut(s) 94
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 3 cut(s) 235, 346, 613
BstSFI CTRYAG 2 cut(s) 372, 384
BstUI CGCG 2 cut(s) 53, 665
BstV1I GCAGC 3 cut(s) 386, 398, 609
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BsuI GTATCC 2 cut(s) 203, 536
BsuRI GGCC 1 cut(s) 120
BtgI CCRYGG 2 cut(s) 115, 396
BtsCI GGATG 3 cut(s) 61, 556, 628
Cac8I GCNNGC 2 cut(s) 190, 602
CaiI CAGNNNCTG 1 cut(s) 353
CfoI GCGC 2 cut(s) 589, 651
Csp6I GTAC 1 cut(s) 424
CviAII CATG 6 cut(s) 116, 142, 189, 304, 397, 547
CviJI RGCY 9 cut(s) 27, 120, 351, 365, 377, 389, 449, 569, 618
CviKI_1 RGCY 9 cut(s) 27, 120, 351, 365, 377, 389, 449, 569, 618
CviQI GTAC 1 cut(s) 424
DpnI GATC 2 cut(s) 140, 487
DpnII GATC 2 cut(s) 138, 485
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 2 cut(s) 115, 396
Eco57I CTGAAG 2 cut(s) 51, 375
Eco91I GGTNACC 1 cut(s) 260
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 3 cut(s) 235, 346, 613
EcoT14I CCWWGG 2 cut(s) 115, 396
ErhI CCWWGG 2 cut(s) 115, 396
FaeI CATG 6 cut(s) 119, 145, 192, 307, 400, 550
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FaqI GGGAC 1 cut(s) 218
FatI CATG 6 cut(s) 115, 141, 188, 303, 396, 546
Fnu4HI GCNGC 4 cut(s) 375, 387, 598, 647
FokI GGATG 3 cut(s) 68, 563, 635
Fsp4HI GCNGC 4 cut(s) 375, 387, 598, 647
FspBI CTAG 1 cut(s) 590
GlaI GCGC 2 cut(s) 588, 650
GluI GCNGC 4 cut(s) 375, 387, 598, 647
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 120
HhaI GCGC 2 cut(s) 589, 651
Hin1II CATG 6 cut(s) 119, 145, 192, 307, 400, 550
Hin6I GCGC 2 cut(s) 587, 649
HinP1I GCGC 2 cut(s) 587, 649
HinfI GANTC 2 cut(s) 174, 294
HphI GGTGA 1 cut(s) 284
Hpy188I TCNGA 6 cut(s) 31, 85, 100, 179, 355, 415
HpyAV CCTTC 3 cut(s) 26, 80, 131
HpyCH4IV ACGT 2 cut(s) 231, 572
HpyCH4V TGCA 5 cut(s) 192, 374, 386, 470, 633
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 383
HpySE526I ACGT 2 cut(s) 231, 572
Hsp92II CATG 6 cut(s) 119, 145, 192, 307, 400, 550
HspAI GCGC 2 cut(s) 587, 649
Kzo9I GATC 2 cut(s) 138, 485
LmnI GCTCC 1 cut(s) 566
Lsp1109I GCAGC 3 cut(s) 386, 398, 609
LweI GCATC 2 cut(s) 46, 574
MaeI CTAG 1 cut(s) 590
MaeII ACGT 2 cut(s) 231, 572
MaeIII GTNAC 2 cut(s) 260, 272
MalI GATC 2 cut(s) 140, 487
MboI GATC 2 cut(s) 138, 485
MboII GAAGA 3 cut(s) 79, 311, 384
MflI RGATCY 1 cut(s) 485
MluCI AATT 2 cut(s) 605, 652
MlyI GAGTC 1 cut(s) 288
MmeI TCCRAC 2 cut(s) 78, 133
MnlI CCTC 6 cut(s) 87, 324, 401, 448, 476, 671
MseI TTAA 3 cut(s) 219, 441, 609
MspR9I CCNGG 3 cut(s) 237, 348, 615
Mva1269I GAATGC 2 cut(s) 37, 501
MvaI CCWGG 3 cut(s) 237, 348, 615
MvnI CGCG 2 cut(s) 53, 665
MwoI GCNNNNNNNGC 2 cut(s) 371, 383
NcoI CCATGG 2 cut(s) 115, 396
NdeII GATC 2 cut(s) 138, 485
NlaIII CATG 6 cut(s) 119, 145, 192, 307, 400, 550
NmeAIII GCCGAG 1 cut(s) 341
NmuCI GTSAC 1 cut(s) 272
NspI RCATGY 1 cut(s) 192
PaeI GCATGC 1 cut(s) 192
PctI GAATGC 2 cut(s) 37, 501
PfeI GAWTC 1 cut(s) 174
PkrI GCNGC 4 cut(s) 376, 388, 599, 648
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 573
PshAI GACNNNNGTC 1 cut(s) 94
PsiI TTATAA 1 cut(s) 492
Psp1406I AACGTT 1 cut(s) 231
Psp6I CCWGG 3 cut(s) 235, 346, 613
PspEI GGTNACC 1 cut(s) 260
PspGI CCWGG 3 cut(s) 235, 346, 613
PstI CTGCAG 2 cut(s) 376, 388
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 1 cut(s) 485
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
SaqAI TTAA 3 cut(s) 219, 441, 609
SatI GCNGC 4 cut(s) 375, 387, 598, 647
Sau3AI GATC 2 cut(s) 138, 485
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 3 cut(s) 237, 348, 615
SetI ASST 9 cut(s) 29, 98, 234, 391, 412, 425, 459, 571, 575
SfaNI GCATC 2 cut(s) 46, 574
SfcI CTRYAG 2 cut(s) 372, 384
SphI GCATGC 1 cut(s) 192
Sse9I AATT 2 cut(s) 605, 652
SsiI CCGC 2 cut(s) 53, 646
SspMI CTAG 1 cut(s) 590
StyD4I CCNGG 3 cut(s) 235, 346, 613
StyI CCWWGG 2 cut(s) 115, 396
TaiI ACGT 2 cut(s) 234, 575
TaqI TCGA 5 cut(s) 65, 297, 316, 428, 462
TasI AATT 2 cut(s) 605, 652
TauI GCSGC 1 cut(s) 649
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 3 cut(s) 219, 441, 609
Tru9I TTAA 3 cut(s) 219, 441, 609
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 3 cut(s) 374, 386, 597
Tsp45I GTSAC 1 cut(s) 272
TspGWI ACGGA 2 cut(s) 222, 510
XceI RCATGY 1 cut(s) 192
XspI CTAG 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.