Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005747

Physical Location & Seq

Genomic Coordinates Forward (+)

16110679 .. 16114979

Gene Structure 4301 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55686

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGATTGGTATTTCGGGAATGGAATTGATGACCTTGTTGTTCCAAATGATGGAGGATCTGACAGGCTTCCATCACCAGATAGCTGGTCAAAATGGGGAATAAGTGCATCTGAGTACTTTCCTAATAAATGTTTTTCCATGTATCCACAATTCAGTAAAGAACTCAACTTCAGCAGTGGGAAAGGTTTATTTGATGAAGGTGAGATGGGAACTTCTGCTAATGACAGAGATCTATCCAGCAGTTCAAGTGTTTGTGAAGGATTGTCTGAGGGCTCTCTTCAGAAGACCTCACTTTCCTACAATCGGGCCTACAATCAACTTGAGGACGTAGCAGGACTACAACAGATGGATGACATTTTCTTGAGTTCCTTACTTGATGATCTTCCTGGGGCAGAAAATGTACATAAATCGTCGTTTTATTTTCGCTCTGATTCCAGTGGCATGTTAGCCAGTGACAGTATCTCGACTAGTATGAATTTGGAATCACAAAGTATTTCAAGCAGTGTTCACAGTGCTGGCAGCTCAAAGTATCTCAAAACTCATGCATTTTCACCAGAATTGGGTTCAGAGAAGGGGCATACCACTACTTCACAGTTCAGTCCATGCAACTCAGAGCAAAAAGACTCTCCACCAGTAAAGGCACGAACGGTTAGACTCATGTCTCCATCTGAGCAAGGGTGCATGCCTAGTGGTGTGGATGAGGAAACATCAGTTGAAGAATCTGTATTGCAGGAGCTGGAAATGGTGATGACACAGTTGACCAAAAAGACCCGAATCTGTTTTCGAGATGCTTTATACCGCCTTGCCGATAACTCAAAAGGAAATCCAGTTTCCCAGAGCCAAGATGGAGACCTTGCTGTTGAAGAACTGTCTTCATGGGCAGCACATGATGAAACAACGAGGTCTGGGAGCAAGGAAGGCACAGAATCAGAGACAAACACCATTGACCGTGCAATTGCAAACCTCATGTTTAATGAGATAGACTTCAATGCACAAGACCTTTCTGGAGGATCATCATCAGACTCCAAACATGAAATCAATGGAGTGTCTTGTCAACAACAATCTGACAACCCCTGCCGGCTACAAATCTCTCATTCGCATCGCAATTCAGTTTTACCACATGATGCTGAGGTTCCTATACTTGGTCAAAGAGACGTGCATAAAAGTTTCTCAACAAGTAATGCTGGTGGAAAGAGGAAGACTCCAATGAGTGAGTTTGGGTCTGCAACTGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

412

Amino Acids

44.87

Weight (kDa)

4.69

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12320 AT3G12320 AT3G12320 AT5G06980 AT5G06980 AT5G06980 AT5G06980 AT5G06980
fragaria_vesca	FvH4_7g03880 FvH4_7g03880 FvH4_7g03880 FvH4_7g03880
malus_domestica	MD07G1043900.v1.1
prunus_persica	Prupe.2G043600_v2.0.a1
pyrus_communis	pycom02g23690 pycom07g03150
rosa_chinensis	RchiOBHm_Chr1g0327331
rosa_laevigata	RLG00000029998
rosa_multiflora	Rmu_sc0003600.1_g000038
rosa_roxburghii	Rroxscaffold_4G00322750
rosa_rugosa	Rorug01G0066400 Rorug01G0066500 Rorug01G0066600
rosa_samantha	Rh1AG083300 Rh1BG066200 Rh1CG081200 Rh1DG087600
rosa_wichuraiana	Rw1G006550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	50
AciI	CCGC	1 cut(s)	799
AclWI	GGATC	2 cut(s)	64, 1018
AcsI	RAATTY	1 cut(s)	475
AcuI	CTGAAG	2 cut(s)	154, 263
AfaI	GTAC	2 cut(s)	116, 402
AfiI	CCNNNNNNNGG	4 cut(s)	50, 303, 560, 1142
AgsI	TTSAA	5 cut(s)	246, 498, 716, 863, 988
AhlI	ACTAGT	1 cut(s)	467
AjiI	CACGTC	1 cut(s)	1156
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	3 cut(s)	84, 522, 736
AluI	AGCT	3 cut(s)	84, 522, 736
Alw26I	GTCTC	4 cut(s)	666, 843, 926, 1146
AlwI	GGATC	2 cut(s)	64, 1018
AlwNI	CAGNNNCTG	1 cut(s)	736
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	519, 881
ApoI	RAATTY	1 cut(s)	475
AspS9I	GGNCC	1 cut(s)	306
AsuHPI	GGTGA	4 cut(s)	66, 212, 543, 757
BanII	GRGCYC	1 cut(s)	275
BbsI	GAAGAC	3 cut(s)	290, 864, 1205
BbvCI	CCTCAGC	1 cut(s)	1128
BbvI	GCAGC	2 cut(s)	531, 893
BccI	CCATC	6 cut(s)	44, 79, 199, 340, 673, 839
BciT130I	CCWGG	1 cut(s)	387
BciVI	GTATCC	1 cut(s)	153
BcoDI	GTCTC	4 cut(s)	666, 843, 926, 1146
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	2 cut(s)	468, 687
BfuI	GTATCC	1 cut(s)	153
BglII	AGATCT	1 cut(s)	229
BisI	GCNGC	2 cut(s)	520, 882
BlsI	GCNGC	2 cut(s)	521, 883
BmcAI	AGTACT	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	387
BmgBI	CACGTC	1 cut(s)	1156
BmgT120I	GGNCC	1 cut(s)	306
BmiI	GGNNCC	1 cut(s)	1134
BmrFI	CCNGG	1 cut(s)	387
BmsI	GCATC	4 cut(s)	116, 778, 1108, 1114
BoxI	GACNNNNGTC	1 cut(s)	658
BpiI	GAAGAC	3 cut(s)	290, 864, 1205
BplI	GAGNNNNNCTC	2 cut(s)	1186, 1218
BpmI	CTGGAG	1 cut(s)	1026
Bpu10I	CCTNAGC	1 cut(s)	1128
BpuEI	CTTGAG	2 cut(s)	341, 382
BsaBI	GATNNNNATC	1 cut(s)	1015
BsaI	GGTCTC	1 cut(s)	843
BsaJI	CCNNGG	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 303, 560, 1142
Bse118I	RCCGGY	1 cut(s)	1077
Bse1I	ACTGG	4 cut(s)	435, 450, 632, 827
Bse8I	GATNNNNATC	1 cut(s)	1015
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	1 cut(s)	386
BseGI	GGATG	2 cut(s)	355, 703
BseJI	GATNNNNATC	1 cut(s)	1015
BseLI	CCNNNNNNNGG	4 cut(s)	50, 303, 560, 1142
BseMII	CTCAG	6 cut(s)	102, 258, 624, 660, 1119, 1221
BseNI	ACTGG	4 cut(s)	435, 450, 632, 827
BseXI	GCAGC	2 cut(s)	531, 893
BshFI	GGCC	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	1078
BslI	CCNNNNNNNGG	4 cut(s)	50, 303, 560, 1142
BsmAI	GTCTC	4 cut(s)	666, 843, 926, 1146
BsmBI	CGTCTC	1 cut(s)	1146
BsnI	GGCC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	843
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	4 cut(s)	56, 229, 379, 1010
BspACI	CCGC	1 cut(s)	799
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	6 cut(s)	103, 259, 623, 661, 1120, 1222
BspLI	GGNNCC	1 cut(s)	1134
BspPI	GGATC	2 cut(s)	64, 1018
BspTNI	GGTCTC	1 cut(s)	843
BsrFI	RCCGGY	1 cut(s)	1077
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	4 cut(s)	435, 450, 632, 827
BssAI	RCCGGY	1 cut(s)	1077
BssECI	CCNNGG	1 cut(s)	386
BssMI	GATC	4 cut(s)	56, 229, 379, 1010
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	7 cut(s)	458, 512, 594, 649, 756, 870, 950
Bst6I	CTCTTC	1 cut(s)	282
BstAUI	TGTACA	1 cut(s)	400
BstC8I	GCNNGC	3 cut(s)	517, 683, 1079
BstDEI	CTNAG	6 cut(s)	111, 267, 610, 669, 1128, 1230
BstF5I	GGATG	2 cut(s)	355, 703
BstKTI	GATC	4 cut(s)	59, 232, 382, 1013
BstMAI	GTCTC	4 cut(s)	666, 843, 926, 1146
BstMBI	GATC	4 cut(s)	56, 229, 379, 1010
BstMWI	GCNNNNNNNGC	1 cut(s)	918
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	2 cut(s)	445, 685
BstPAI	GACNNNNGTC	1 cut(s)	658
BstSCI	CCNGG	1 cut(s)	385
BstV1I	GCAGC	2 cut(s)	531, 893
BstV2I	GAAGAC	3 cut(s)	290, 864, 1205
BstX2I	RGATCY	2 cut(s)	56, 229
BstXI	CCANNNNNNTGG	1 cut(s)	84
BstYI	RGATCY	2 cut(s)	56, 229
BsuI	GTATCC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	308
BtgZI	GCGATG	1 cut(s)	1085
BtrI	CACGTC	1 cut(s)	1156
BtsCI	GGATG	2 cut(s)	355, 703
BtsI	GCAGTG	2 cut(s)	181, 508
BtsIMutI	CAGTG	5 cut(s)	181, 442, 457, 508, 517
Cac8I	GCNNGC	3 cut(s)	517, 683, 1079
CaiI	CAGNNNCTG	1 cut(s)	736
Cfr10I	RCCGGY	1 cut(s)	1077
Cfr13I	GGNCC	1 cut(s)	306
Csp6I	GTAC	2 cut(s)	115, 401
CviJI	RGCY	9 cut(s)	67, 84, 273, 308, 449, 522, 736, 840, 1081
CviKI_1	RGCY	9 cut(s)	67, 84, 273, 308, 449, 522, 736, 840, 1081
CviQI	GTAC	2 cut(s)	115, 401
DdeI	CTNAG	6 cut(s)	111, 267, 610, 669, 1128, 1230
DpnI	GATC	4 cut(s)	58, 231, 381, 1012
DpnII	GATC	4 cut(s)	56, 229, 379, 1010
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	843
Eco57I	CTGAAG	2 cut(s)	154, 263
EcoRII	CCWGG	1 cut(s)	385
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	275
Esp3I	CGTCTC	1 cut(s)	1146
Fnu4HI	GCNGC	2 cut(s)	520, 882
FokI	GGATG	2 cut(s)	362, 710
FriOI	GRGCYC	1 cut(s)	275
Fsp4HI	GCNGC	2 cut(s)	520, 882
FspBI	CTAG	2 cut(s)	468, 687
GluI	GCNGC	2 cut(s)	520, 882
GsuI	CTGGAG	1 cut(s)	1026
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	1 cut(s)	1078
HincII	GTYRAC	2 cut(s)	759, 1055
HindII	GTYRAC	2 cut(s)	759, 1055
HinfI	GANTC	9 cut(s)	431, 482, 623, 654, 719, 774, 926, 1022, 1201
HpaII	CCGG	1 cut(s)	1078
HphI	GGTGA	4 cut(s)	66, 212, 543, 757
Hpy166II	GTNNAC	3 cut(s)	508, 759, 1055
Hpy188III	TCNNGA	5 cut(s)	16, 361, 463, 785, 1005
Hpy8I	GTNNAC	3 cut(s)	508, 759, 1055
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	4 cut(s)	191, 251, 565, 911
HpyCH4III	ACNGT	7 cut(s)	458, 512, 594, 649, 756, 870, 950
HpyCH4IV	ACGT	2 cut(s)	327, 1155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	918
HpyF3I	CTNAG	6 cut(s)	111, 267, 610, 669, 1128, 1230
HpySE526I	ACGT	2 cut(s)	327, 1155
KroI	GCCGGC	1 cut(s)	1077
KroNI	GCCGGC	1 cut(s)	1079
Kzo9I	GATC	4 cut(s)	56, 229, 379, 1010
LmnI	GCTCC	2 cut(s)	733, 909
Lsp1109I	GCAGC	2 cut(s)	531, 893
LweI	GCATC	4 cut(s)	116, 778, 1108, 1114
MaeI	CTAG	2 cut(s)	468, 687
MaeII	ACGT	2 cut(s)	327, 1155
MaeIII	GTNAC	1 cut(s)	452
MalI	GATC	4 cut(s)	58, 231, 381, 1012
MboI	GATC	4 cut(s)	56, 229, 379, 1010
MboII	GAAGA	7 cut(s)	269, 295, 374, 728, 864, 875, 1210
MfeI	CAATTG	1 cut(s)	954
MflI	RGATCY	2 cut(s)	56, 229
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	6 cut(s)	24, 149, 475, 557, 954, 1105
MlyI	GAGTC	4 cut(s)	617, 648, 1016, 1195
Mph1103I	ATGCAT	1 cut(s)	547
MroNI	GCCGGC	1 cut(s)	1077
MseI	TTAA	1 cut(s)	972
MspI	CCGG	1 cut(s)	1078
MspR9I	CCNGG	1 cut(s)	387
MunI	CAATTG	1 cut(s)	954
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	918
NaeI	GCCGGC	1 cut(s)	1079
NdeII	GATC	4 cut(s)	56, 229, 379, 1010
NgoMIV	GCCGGC	1 cut(s)	1077
NlaIV	GGNNCC	1 cut(s)	1134
NmuCI	GTSAC	1 cut(s)	452
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	2 cut(s)	445, 685
PaeI	GCATGC	1 cut(s)	685
PdiI	GCCGGC	1 cut(s)	1079
PfeI	GAWTC	5 cut(s)	431, 482, 719, 774, 926
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	521, 883
PleI	GAGTC	4 cut(s)	617, 648, 1016, 1195
PpsI	GAGTC	4 cut(s)	617, 648, 1016, 1195
PshAI	GACNNNNGTC	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	1134
PspPI	GGNCC	1 cut(s)	306
PstNI	CAGNNNCTG	1 cut(s)	736
PsuI	RGATCY	2 cut(s)	56, 229
RsaI	GTAC	2 cut(s)	116, 402
RsaNI	GTAC	2 cut(s)	115, 401
SaqAI	TTAA	1 cut(s)	972
SatI	GCNGC	2 cut(s)	520, 882
Sau3AI	GATC	4 cut(s)	56, 229, 379, 1010
Sau96I	GGNCC	1 cut(s)	306
ScaI	AGTACT	1 cut(s)	116
SchI	GAGTC	4 cut(s)	617, 648, 1016, 1195
ScrFI	CCNGG	1 cut(s)	387
SduI	GDGCHC	1 cut(s)	275
SfaNI	GCATC	4 cut(s)	116, 778, 1108, 1114
SmlI	CTYRAG	2 cut(s)	320, 361
SmoI	CTYRAG	2 cut(s)	320, 361
SpeI	ACTAGT	1 cut(s)	467
SphI	GCATGC	1 cut(s)	685
Sse9I	AATT	6 cut(s)	24, 149, 475, 557, 954, 1105
SsiI	CCGC	1 cut(s)	799
SspMI	CTAG	2 cut(s)	468, 687
StyD4I	CCNGG	1 cut(s)	385
TaaI	ACNGT	7 cut(s)	458, 512, 594, 649, 756, 870, 950
TaiI	ACGT	2 cut(s)	330, 1158
TaqI	TCGA	2 cut(s)	464, 784
TasI	AATT	6 cut(s)	24, 149, 475, 557, 954, 1105
TatI	WGTACW	2 cut(s)	114, 400
TfiI	GAWTC	5 cut(s)	431, 482, 719, 774, 926
Tru1I	TTAA	1 cut(s)	972
Tru9I	TTAA	1 cut(s)	972
TscAI	CASTG	5 cut(s)	181, 442, 457, 508, 517
TseFI	GTSAC	1 cut(s)	452
TseI	GCWGC	2 cut(s)	519, 881
Tsp45I	GTSAC	1 cut(s)	452
TspDTI	ATGAA	5 cut(s)	210, 488, 864, 906, 1047
TspRI	CASTG	5 cut(s)	181, 442, 457, 508, 517
Van91I	CCANNNNNTGG	1 cut(s)	50
XapI	RAATTY	1 cut(s)	475
XceI	RCATGY	2 cut(s)	445, 685
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XspI	CTAG	2 cut(s)	468, 687
ZrmI	AGTACT	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.