AT5G07310

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012764
Physical Location & Seq
Forward (+)
2305551 .. 2306837
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07310.1

Sequence Viewer

Length: 792 bp
ATGGCGAATTCAGGAAATTATGGAAAGAGGCCCTTTCGAGGCGATGAATCGGATGAAAAGAAAGAAGCCGATGATGATGAGAACATATTCCCTTTCTTCTCTGCCCGATCCCAATATGACATGCGTGCCATGGTCTCAGCCTTGACTCAAGTCATTGGAAACCAAAGCAGCTCTCATGATAATAACCAACATCAACCTGTTGTGTATAATCAACAAGATCCTAACCCACCGGCTCCTCCAACTCAAGATCAAGGGCTATTGAGGAAGAGGCACTATAGAGGGGTAAGACAACGACCATGGGGAAAGTGGGCAGCTGAAATTCGGGATCCGCAAAAGGCAGCACGGGTGTGGCTCGGGACATTTGAGACTGCTGAAGCTGCGGCTTTAGCTTATGATAACGCAGCTCTTAAGTTCAAAGGAAGCAAAGCCAAACTCAATTTCCCTGAGAGAGCTCAACTAGCAAGTAACACTAGTACAACTACCGGTCCACCAAACTATTATTCTTCTAATAATCAAATTTACTACTCAAATCCGCAGACTAATCCGCAAACCATACCTTATTTTAACCAATACTACTATAACCAATATCTTCATCAAGGGGGGAATAGTAACGATGCATTAAGTTATAGCTTGGCCGGTGGAGAAACCGGAGGCTCAATGTATAATCATCAGACGTTATCTACTACAAATTCTTCATCTTCTGGTGGATCTTCAAGGCAACAAGATGATGAACAAGATTACGCCAGATATTTGCGTTTTGGGGATTCTTCACCTCCTAATTCTGGTTTTTGA

Protein Analysis

263

Amino Acids

29.41

Weight (kDa)

6.52

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 91 - 140 3.2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012764)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07310 AT5G61890
fragaria_vesca FvH4_5g09520
malus_domestica MD06G1130100.v1.1 MD06G1130300.v1.1 MD14G1147100.v1.1
prunus_persica Prupe.5G141200_v2.0.a1
pyrus_communis pycom14g12170
rosa_chinensis RchiOBHm_Chr7g0188681
rosa_laevigata RLG00000004671
rosa_multiflora Rmu_sc0001576.1_g000027
rosa_roxburghii Rroxscaffold_3G00266140
rosa_rugosa Rorug06G0492200
rosa_samantha Rh7AG097100 Rh7BG098900 Rh7CG100700 Rh7DG099300
rosa_wichuraiana Rw7G008400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 329, 380, 533, 545
AclWI GGATC 5 cut(s) 102, 212, 320, 333, 715
AcoI YGGCCR 1 cut(s) 633
AcsI RAATTY 4 cut(s) 7, 318, 516, 688
AcuI CTGAAG 1 cut(s) 393
AfaI GTAC 1 cut(s) 475
AfiI CCNNNNNNNGG 2 cut(s) 38, 782
AflII CTTAAG 1 cut(s) 407
AgeI ACCGGT 1 cut(s) 482
AgsI TTSAA 2 cut(s) 415, 714
AhlI ACTAGT 1 cut(s) 470
AjuI GAANNNNNNNTTGG 4 cut(s) 422, 454, 484, 516
AleI CACNNNNGTG 1 cut(s) 346
AluBI AGCT 7 cut(s) 171, 314, 377, 389, 404, 452, 630
AluI AGCT 7 cut(s) 171, 314, 377, 389, 404, 452, 630
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 2 cut(s) 139, 359
AlwI GGATC 5 cut(s) 102, 212, 320, 333, 715
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 2 cut(s) 29, 633
ApeKI GCWGC 5 cut(s) 168, 311, 338, 377, 401
ApoI RAATTY 4 cut(s) 7, 318, 516, 688
AsiGI ACCGGT 1 cut(s) 482
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 30, 485
AsuHPI GGTGA 1 cut(s) 762
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 1 cut(s) 485
BamHI GGATCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 454
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 5 cut(s) 180, 323, 350, 364, 413
BcoDI GTCTC 2 cut(s) 139, 359
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 2 cut(s) 458, 471
BfmI CTRYAG 1 cut(s) 274
BfrI CTTAAG 1 cut(s) 407
BisI GCNGC 6 cut(s) 169, 312, 339, 378, 381, 402
BlsI GCNGC 6 cut(s) 170, 313, 340, 379, 382, 403
Bme18I GGWCC 1 cut(s) 485
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 30, 485
BmiI GGNNCC 2 cut(s) 234, 327
BmsI GCATC 1 cut(s) 604
BoxI GACNNNNGTC 1 cut(s) 149
BpuEI CTTGAG 2 cut(s) 132, 228
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 129, 296
BsaWI WCCGGW 2 cut(s) 482, 647
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 782
Bse118I RCCGGY 3 cut(s) 229, 482, 635
BseDI CCNNGG 2 cut(s) 129, 296
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 38, 782
BseMII CTCAG 2 cut(s) 150, 435
BseRI GAGGAG 1 cut(s) 225
BseXI GCAGC 5 cut(s) 180, 323, 350, 364, 413
BshFI GGCC 2 cut(s) 31, 635
BshTI ACCGGT 1 cut(s) 482
BsiHKAI GWGCWC 1 cut(s) 454
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 4 cut(s) 230, 483, 636, 648
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 38, 782
BsmAI GTCTC 2 cut(s) 139, 359
BsmFI GGGAC 1 cut(s) 370
BsnI GGCC 2 cut(s) 31, 635
Bso31I GGTCTC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 5 cut(s) 107, 217, 247, 325, 707
Bsp19I CCATGG 2 cut(s) 129, 296
BspACI CCGC 4 cut(s) 329, 380, 533, 545
BspANI GGCC 2 cut(s) 31, 635
BspCNI CTCAG 2 cut(s) 149, 436
BspHI TCATGA 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 234, 327
BspPI GGATC 5 cut(s) 102, 212, 320, 333, 715
BspTI CTTAAG 1 cut(s) 407
BspTNI GGTCTC 1 cut(s) 139
BsrFI RCCGGY 3 cut(s) 229, 482, 635
BssAI RCCGGY 3 cut(s) 229, 482, 635
BssECI CCNNGG 2 cut(s) 129, 296
BssMI GATC 5 cut(s) 107, 217, 247, 325, 707
BssT1I CCWWGG 2 cut(s) 129, 296
Bst6I CTCTTC 1 cut(s) 260
BstAFI CTTAAG 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 126
BstDEI CTNAG 2 cut(s) 136, 444
BstDSI CCRYGG 2 cut(s) 129, 296
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 5 cut(s) 110, 220, 250, 328, 710
BstMAI GTCTC 2 cut(s) 139, 359
BstMBI GATC 5 cut(s) 107, 217, 247, 325, 707
BstMWI GCNNNNNNNGC 3 cut(s) 377, 386, 458
BstNSI RCATGY 1 cut(s) 124
BstPAI GACNNNNGTC 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 274
BstV1I GCAGC 5 cut(s) 180, 323, 350, 364, 413
BstX2I RGATCY 3 cut(s) 217, 325, 707
BstYI RGATCY 3 cut(s) 217, 325, 707
BsuRI GGCC 2 cut(s) 31, 635
BtgI CCRYGG 2 cut(s) 129, 296
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 126
CciI TCATGA 1 cut(s) 175
Cfr10I RCCGGY 3 cut(s) 229, 482, 635
Cfr13I GGNCC 2 cut(s) 30, 485
Csp6I GTAC 1 cut(s) 474
CspAI ACCGGT 1 cut(s) 482
CviAII CATG 4 cut(s) 121, 130, 176, 297
CviQI GTAC 1 cut(s) 474
DdeI CTNAG 2 cut(s) 136, 444
DpnI GATC 5 cut(s) 109, 219, 249, 327, 709
DpnII GATC 5 cut(s) 107, 217, 247, 325, 707
EaeI YGGCCR 1 cut(s) 633
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Ecl136II GAGCTC 1 cut(s) 452
Eco130I CCWWGG 2 cut(s) 129, 296
Eco24I GRGCYC 1 cut(s) 454
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 485
Eco53kI GAGCTC 1 cut(s) 452
Eco57I CTGAAG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 452
EcoO109I RGGNCCY 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 7
EcoT14I CCWWGG 2 cut(s) 129, 296
EcoT22I ATGCAT 1 cut(s) 619
EcoT38I GRGCYC 1 cut(s) 454
ErhI CCWWGG 2 cut(s) 129, 296
FaeI CATG 4 cut(s) 124, 133, 179, 300
FalI AAGNNNNNCTT 2 cut(s) 17, 49
FaqI GGGAC 1 cut(s) 370
FatI CATG 4 cut(s) 120, 129, 175, 296
Fnu4HI GCNGC 6 cut(s) 169, 312, 339, 378, 381, 402
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 454
Fsp4HI GCNGC 6 cut(s) 169, 312, 339, 378, 381, 402
FspBI CTAG 2 cut(s) 458, 471
GluI GCNGC 6 cut(s) 169, 312, 339, 378, 381, 402
HaeIII GGCC 2 cut(s) 31, 635
HapII CCGG 4 cut(s) 230, 483, 636, 648
Hin1II CATG 4 cut(s) 124, 133, 179, 300
HinfI GANTC 3 cut(s) 47, 145, 764
HpaII CCGG 4 cut(s) 230, 483, 636, 648
HphI GGTGA 1 cut(s) 762
Hpy166II GTNNAC 1 cut(s) 488
Hpy188I TCNGA 2 cut(s) 52, 672
Hpy188III TCNNGA 5 cut(s) 12, 176, 245, 323, 355
Hpy8I GTNNAC 1 cut(s) 488
HpyCH4IV ACGT 1 cut(s) 674
HpyCH4V TGCA 1 cut(s) 617
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 386, 458
HpyF3I CTNAG 2 cut(s) 136, 444
HpySE526I ACGT 1 cut(s) 674
Hsp92II CATG 4 cut(s) 124, 133, 179, 300
Kzo9I GATC 5 cut(s) 107, 217, 247, 325, 707
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 9 cut(s) 210, 243, 456, 496, 649, 661, 687, 757, 768
Lsp1109I GCAGC 5 cut(s) 180, 323, 350, 364, 413
LweI GCATC 1 cut(s) 604
MaeI CTAG 2 cut(s) 458, 471
MaeII ACGT 1 cut(s) 674
MaeIII GTNAC 2 cut(s) 464, 608
MalI GATC 5 cut(s) 109, 219, 249, 327, 709
MboI GATC 5 cut(s) 107, 217, 247, 325, 707
MboII GAAGA 8 cut(s) 88, 277, 495, 581, 684, 690, 702, 759
MflI RGATCY 3 cut(s) 217, 325, 707
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 7 cut(s) 7, 16, 318, 436, 516, 688, 778
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 8 cut(s) 21, 32, 246, 255, 261, 272, 644, 783
Mph1103I ATGCAT 1 cut(s) 619
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 3 cut(s) 408, 564, 620
MslI CAYNNNNRTG 1 cut(s) 346
MspA1I CMGCKG 1 cut(s) 314
MspCI CTTAAG 1 cut(s) 407
MspI CCGG 4 cut(s) 230, 483, 636, 648
MwoI GCNNNNNNNGC 3 cut(s) 377, 386, 458
NcoI CCATGG 2 cut(s) 129, 296
NdeII GATC 5 cut(s) 107, 217, 247, 325, 707
NlaIII CATG 4 cut(s) 124, 133, 179, 300
NlaIV GGNNCC 2 cut(s) 234, 327
NsiI ATGCAT 1 cut(s) 619
NspI RCATGY 1 cut(s) 124
OliI CACNNNNGTG 1 cut(s) 346
PagI TCATGA 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 47, 764
PinAI ACCGGT 1 cut(s) 482
PkrI GCNGC 6 cut(s) 170, 313, 340, 379, 382, 403
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PshAI GACNNNNGTC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 454
PspN4I GGNNCC 2 cut(s) 234, 327
PspPI GGNCC 2 cut(s) 30, 485
PsuI RGATCY 3 cut(s) 217, 325, 707
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 1 cut(s) 475
RsaNI GTAC 1 cut(s) 474
RseI CAYNNNNRTG 1 cut(s) 346
SacI GAGCTC 1 cut(s) 454
SaqAI TTAA 3 cut(s) 408, 564, 620
SatI GCNGC 6 cut(s) 169, 312, 339, 378, 381, 402
Sau3AI GATC 5 cut(s) 107, 217, 247, 325, 707
Sau96I GGNCC 2 cut(s) 30, 485
SchI GAGTC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 1 cut(s) 604
SfcI CTRYAG 1 cut(s) 274
SinI GGWCC 1 cut(s) 485
SmiMI CAYNNNNRTG 1 cut(s) 346
SmlI CTYRAG 3 cut(s) 147, 243, 407
SmoI CTYRAG 3 cut(s) 147, 243, 407
SpeI ACTAGT 1 cut(s) 470
Sse9I AATT 7 cut(s) 7, 16, 318, 436, 516, 688, 778
SsiI CCGC 4 cut(s) 329, 380, 533, 545
SspMI CTAG 2 cut(s) 458, 471
SstI GAGCTC 1 cut(s) 454
StyI CCWWGG 2 cut(s) 129, 296
TaiI ACGT 1 cut(s) 677
TaqI TCGA 1 cut(s) 37
TasI AATT 7 cut(s) 7, 16, 318, 436, 516, 688, 778
TatI WGTACW 1 cut(s) 473
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 2 cut(s) 47, 764
Tru1I TTAA 3 cut(s) 408, 564, 620
Tru9I TTAA 3 cut(s) 408, 564, 620
TseI GCWGC 5 cut(s) 168, 311, 338, 377, 401
TspDTI ATGAA 5 cut(s) 60, 69, 581, 684, 744
Vha464I CTTAAG 1 cut(s) 407
VpaK11BI GGWCC 1 cut(s) 485
XapI RAATTY 4 cut(s) 7, 318, 516, 688
XceI RCATGY 1 cut(s) 124
XcmI CCANNNNNNNNNTGG 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 2 cut(s) 458, 471
Zsp2I ATGCAT 1 cut(s) 619
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.