Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012764

Physical Location & Seq

Genomic Coordinates Reverse (-)

13135047 .. 13137176

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G141200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGATTTCAGCTCTAGCTCAGGTAATTGGAAATACTGACCAAACCCCACTTCAACAAGTGCAAGGAAATCCATTAATCACCTCACAATCCAGCCCTGCAGAAAGCCGATCTCAACCAGCACTGCAAGATCGAGGGAATGTGAGGAGACAACAATATAGAGGAGTGAGGCAGAGAAAGTGGGGAAAGTGGGCGGCTGAGATTCGTGATCCGAATAAGGCAGTACGGTTGTGGCTGGGCACTTATGACACGGCTGAGGCTGCTGCACTTGCCTATGATGAAGCAGCTCTCGGGTTCAAAGGAAGCAAGGCTAAGCTTAACTTCCCGGAAAGAGTTCAAGAGAGCTCAGAATTTGGCAACCTCACAATTAACACTCAACAACAACACAACTTGAACAATCCGGAAAATGTTGAAAGAGTTCAAGTTGCAGACCCTGTGGTTCCCAATCCTCCTCATCAGCCTATTTATTGTGCACCATATGTTCAAGGTGGAAGTAACAGCGTAGATTATAATGTTCATCAAGTGCTGCCATCTCATGAGAATTACGCACCGCAAATCTTACCCACCACATCTTCTACATCATCTTCCATGCCATCTCAACAAGAAGAGCTCCGAAGAAAGCAGGTTGGTTCTTCTCGTTCGAGATCGGATCTTCCTAATAAATATAGGAAAGACTTTGAAGGCAGTCACTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

232

Amino Acids

25.76

Weight (kDa)

9.21

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07310 AT5G61890
fragaria_vesca	FvH4_5g09520
malus_domestica	MD06G1130100.v1.1 MD06G1130300.v1.1 MD14G1147100.v1.1
prunus_persica	Prupe.5G141200_v2.0.a1
pyrus_communis	pycom14g12170
rosa_chinensis	RchiOBHm_Chr7g0188681
rosa_laevigata	RLG00000004671
rosa_multiflora	Rmu_sc0001576.1_g000027
rosa_roxburghii	Rroxscaffold_3G00266140
rosa_rugosa	Rorug06G0492200
rosa_samantha	Rh7AG097100 Rh7BG098900 Rh7CG100700 Rh7DG099300
rosa_wichuraiana	Rw7G008400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	507
Acc36I	ACCTGC	1 cut(s)	610
AccIII	TCCGGA	1 cut(s)	397
AciI	CCGC	2 cut(s)	191, 548
AclWI	GGATC	2 cut(s)	200, 654
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	1 cut(s)	222
AgsI	TTSAA	8 cut(s)	53, 295, 335, 391, 410, 419, 482, 677
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	6 cut(s)	11, 17, 284, 313, 342, 607
AluI	AGCT	6 cut(s)	11, 17, 284, 313, 342, 607
Alw21I	GWGCWC	3 cut(s)	344, 472, 609
Alw26I	GTCTC	1 cut(s)	139
Alw44I	GTGCAC	1 cut(s)	468
AlwI	GGATC	2 cut(s)	200, 654
AlwNI	CAGNNNCTG	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	397
ApaLI	GTGCAC	1 cut(s)	468
ApeKI	GCWGC	4 cut(s)	257, 260, 281, 523
ApoI	RAATTY	1 cut(s)	347
AseI	ATTAAT	1 cut(s)	74
Asp700I	GAANNNNTTC	2 cut(s)	330, 414
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	70
AvaI	CYCGRG	1 cut(s)	287
BaeGI	GKGCMC	2 cut(s)	239, 472
BanII	GRGCYC	2 cut(s)	344, 609
Bbv12I	GWGCWC	3 cut(s)	344, 472, 609
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	4 cut(s)	244, 247, 293, 510
BccI	CCATC	2 cut(s)	535, 598
BceAI	ACGGC	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	323
BcoDI	GTCTC	1 cut(s)	139
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	610
BisI	GCNGC	5 cut(s)	192, 258, 261, 282, 524
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	5 cut(s)	193, 259, 262, 283, 525
Bme1390I	CCNGG	1 cut(s)	323
BmeT110I	CYCGRG	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	1 cut(s)	323
Bpu10I	CCTNAGC	2 cut(s)	18, 252
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	673
BpuMI	CCSGG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	397
BseAI	TCCGGA	1 cut(s)	397
BseMII	CTCAG	4 cut(s)	32, 186, 243, 357
BseRI	GAGGAG	3 cut(s)	157, 174, 438
BseSI	GKGCMC	2 cut(s)	239, 472
BseXI	GCAGC	4 cut(s)	244, 247, 293, 510
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	246
BsiHKAI	GWGCWC	3 cut(s)	344, 472, 609
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	323, 398
BsmAI	GTCTC	1 cut(s)	139
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	4 cut(s)	239, 344, 472, 609
Bsp13I	TCCGGA	1 cut(s)	397
Bsp143I	GATC	5 cut(s)	107, 127, 205, 641, 646
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	2 cut(s)	191, 548
BspCNI	CTCAG	4 cut(s)	31, 187, 244, 356
BspEI	TCCGGA	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	2 cut(s)	200, 654
BspQI	GCTCTTC	1 cut(s)	597
BssMI	GATC	5 cut(s)	107, 127, 205, 641, 646
Bst4CI	ACNGT	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	597
BstDEI	CTNAG	5 cut(s)	18, 195, 252, 309, 343
BstKTI	GATC	5 cut(s)	110, 130, 208, 644, 649
BstMAI	GTCTC	1 cut(s)	139
BstMBI	GATC	5 cut(s)	107, 127, 205, 641, 646
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 266
BstSCI	CCNGG	1 cut(s)	321
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	2 cut(s)	239, 472
BstV1I	GCAGC	4 cut(s)	244, 247, 293, 510
BstX2I	RGATCY	1 cut(s)	646
BstYI	RGATCY	1 cut(s)	646
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
BveI	ACCTGC	1 cut(s)	610
CaiI	CAGNNNCTG	1 cut(s)	431
CciI	TCATGA	1 cut(s)	532
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	2 cut(s)	533, 586
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	5 cut(s)	18, 195, 252, 309, 343
DpnI	GATC	5 cut(s)	109, 129, 207, 643, 648
DpnII	GATC	5 cut(s)	107, 127, 205, 641, 646
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
Ecl136II	GAGCTC	2 cut(s)	342, 607
Eco24I	GRGCYC	2 cut(s)	344, 609
Eco53kI	GAGCTC	2 cut(s)	342, 607
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	2 cut(s)	342, 607
EcoT38I	GRGCYC	2 cut(s)	344, 609
FaeI	CATG	2 cut(s)	536, 589
FaiI	YATR	9 cut(s)	156, 243, 273, 475, 477, 507, 534, 587, 663
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FatI	CATG	2 cut(s)	532, 585
FauNDI	CATATG	1 cut(s)	475
Fnu4HI	GCNGC	5 cut(s)	192, 258, 261, 282, 524
FriOI	GRGCYC	2 cut(s)	344, 609
Fsp4HI	GCNGC	5 cut(s)	192, 258, 261, 282, 524
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	5 cut(s)	192, 258, 261, 282, 524
GsaI	CCCAGC	1 cut(s)	236
HapII	CCGG	2 cut(s)	323, 398
Hin1II	CATG	2 cut(s)	536, 589
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	2 cut(s)	323, 398
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	1 cut(s)	470
Hpy188I	TCNGA	4 cut(s)	210, 346, 611, 646
Hpy188III	TCNNGA	6 cut(s)	203, 335, 398, 533, 639, 690
Hpy8I	GTNNAC	1 cut(s)	470
HpyAV	CCTTC	1 cut(s)	671
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4V	TGCA	6 cut(s)	61, 98, 124, 263, 425, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 266
HpyF3I	CTNAG	5 cut(s)	18, 195, 252, 309, 343
Hsp92II	CATG	2 cut(s)	536, 589
Kpn2I	TCCGGA	1 cut(s)	397
Kzo9I	GATC	5 cut(s)	107, 127, 205, 641, 646
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	1 cut(s)	612
LpnPI	CCDG	9 cut(s)	5, 103, 108, 129, 218, 336, 411, 444, 605
Lsp1109I	GCAGC	4 cut(s)	244, 247, 293, 510
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	2 cut(s)	491, 683
MalI	GATC	5 cut(s)	109, 129, 207, 643, 648
MboI	GATC	5 cut(s)	107, 127, 205, 641, 646
MboII	GAAGA	6 cut(s)	561, 573, 614, 621, 624, 641
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	4 cut(s)	239, 344, 472, 609
MluCI	AATT	4 cut(s)	24, 347, 363, 538
MnlI	CCTC	9 cut(s)	91, 125, 135, 152, 159, 247, 368, 456, 459
MroI	TCCGGA	1 cut(s)	397
MroXI	GAANNNNTTC	2 cut(s)	330, 414
MseI	TTAA	3 cut(s)	74, 315, 366
MspI	CCGG	2 cut(s)	323, 398
MspR9I	CCNGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	257, 266
NciI	CCSGG	1 cut(s)	323
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	5 cut(s)	107, 127, 205, 641, 646
NlaIII	CATG	2 cut(s)	536, 589
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	683
PagI	TCATGA	1 cut(s)	532
PciSI	GCTCTTC	1 cut(s)	597
PdmI	GAANNNNTTC	2 cut(s)	330, 414
PfeI	GAWTC	1 cut(s)	199
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	193, 259, 262, 283, 525
PshBI	ATTAAT	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	507
Psp124BI	GAGCTC	2 cut(s)	344, 609
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	438
PstI	CTGCAG	1 cut(s)	100
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	646
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SacI	GAGCTC	2 cut(s)	344, 609
SapI	GCTCTTC	1 cut(s)	597
SaqAI	TTAA	3 cut(s)	74, 315, 366
SatI	GCNGC	5 cut(s)	192, 258, 261, 282, 524
Sau3AI	GATC	5 cut(s)	107, 127, 205, 641, 646
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	4 cut(s)	239, 344, 472, 609
SfcI	CTRYAG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	688
SmoI	CTYRAG	1 cut(s)	688
Sse9I	AATT	4 cut(s)	24, 347, 363, 538
SsiI	CCGC	2 cut(s)	191, 548
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	2 cut(s)	344, 609
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	130, 638
TasI	AATT	4 cut(s)	24, 347, 363, 538
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	3 cut(s)	74, 315, 366
Tru9I	TTAA	3 cut(s)	74, 315, 366
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	4 cut(s)	257, 260, 281, 523
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	2 cut(s)	291, 503
TspRI	CASTG	1 cut(s)	126
VneI	GTGCAC	1 cut(s)	468
VspI	ATTAAT	1 cut(s)	74
XapI	RAATTY	1 cut(s)	347
XmnI	GAANNNNTTC	2 cut(s)	330, 414
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.