AT5G61890

DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012764
Physical Location & Seq
Reverse (-)
24852322 .. 24853941
1620 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G61890.1

Sequence Viewer

Length: 747 bp
ATGTATGGGAAGAGGCCTTTTGGAGGTGATGAATCTGAAGAAAGGGAAGAAGATGAGAACTTGTTCCCGGTCTTCTCGGCCCGATCTCAACACGACATGCGTGTTATGGTCTCGGCCTTGACTCAAGTAATCGGAAACCAACAAAGCAAATCTCATGATAACATCAGCTCTATTGATGATAACTATCCTTCTGTGTATAATCCACAAGACCCTAATCAACAAGTTGCGCCTACTCATCAAGACCAAGGGGACTTGAGGAGGAGACATTATAGAGGTGTAAGGCAAAGGCCATGGGGAAAGTGGGCAGCTGAAATCCGAGACCCAAAAAAGGCGGCACGTGTGTGGCTCGGGACATTTGAAACCGCTGAATCTGCGGCCTTAGCTTATGATGAAGCAGCCCTAAAGTTCAAAGGAAGCAAAGCAAAACTCAATTTCCCGGAGAGGGTTCAGCTTGGAAGTAACTCTACATATTACTCCTCCAACCAAATTCCACAAATGGAACCACAAAGTATACCGAACTATAATCAATACTATCATGATGCGAGTAGTGGTGATATGCTAAGTTTTAATTTGGGCGGTGGGTATGGGAGTGGTACCGGATATTCAATGTCTCATGATAATAGTACTACGACTGCTGCTACAACTTCTTCGTCTTCTGGTGGCTCTTCTAGGCAACAAGAAGAGCAAGATTATGCCAGATTCTGGCGCTTTGGGGATTCTTCTTCCTCTCCTCATTCGGGATATTAA

Protein Analysis

248

Amino Acids

27.73

Weight (kDa)

5.81

Isoelectric Point (pI)

61.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 89 - 138 1.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012764)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07310 AT5G61890
fragaria_vesca FvH4_5g09520
malus_domestica MD06G1130100.v1.1 MD06G1130300.v1.1 MD14G1147100.v1.1
prunus_persica Prupe.5G141200_v2.0.a1
pyrus_communis pycom14g12170
rosa_chinensis RchiOBHm_Chr7g0188681
rosa_laevigata RLG00000004671
rosa_multiflora Rmu_sc0001576.1_g000027
rosa_roxburghii Rroxscaffold_3G00266140
rosa_rugosa Rorug06G0492200
rosa_samantha Rh7AG097100 Rh7BG098900 Rh7CG100700 Rh7DG099300
rosa_wichuraiana Rw7G008400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 593
AccB1I GGYRCC 1 cut(s) 593
AccB7I CCANNNNNTGG 1 cut(s) 702
AccI GTMKAC 1 cut(s) 511
AciI CCGC 4 cut(s) 332, 363, 374, 576
AcsI RAATTY 1 cut(s) 486
AcuI CTGAAG 1 cut(s) 57
AcvI CACGTG 1 cut(s) 338
AfaI GTAC 2 cut(s) 595, 625
AfiI CCNNNNNNNGG 5 cut(s) 23, 328, 442, 702, 737
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 3 cut(s) 359, 409, 606
AleI CACNNNNGTG 1 cut(s) 340
AluBI AGCT 4 cut(s) 168, 308, 383, 451
AluI AGCT 4 cut(s) 168, 308, 383, 451
Alw26I GTCTC 4 cut(s) 115, 256, 312, 615
AlwNI CAGNNNCTG 1 cut(s) 702
Ama87I CYCGRG 1 cut(s) 347
AoxI GGCC 5 cut(s) 14, 78, 114, 287, 375
ApeKI GCWGC 3 cut(s) 305, 395, 635
ApoI RAATTY 1 cut(s) 486
Asp700I GAANNNNTTC 1 cut(s) 62
Asp718I GGTACC 1 cut(s) 593
AspLEI GCGC 2 cut(s) 229, 708
AspS9I GGNCC 1 cut(s) 79
AsuC2I CCSGG 2 cut(s) 68, 437
AsuHPI GGTGA 2 cut(s) 38, 563
AvaI CYCGRG 1 cut(s) 347
BanI GGYRCC 1 cut(s) 593
BarI GAAGNNNNNNTAC 2 cut(s) 448, 480
BbrPI CACGTG 1 cut(s) 338
BbsI GAAGAC 2 cut(s) 64, 645
BbvI GCAGC 3 cut(s) 317, 407, 622
BcnI CCSGG 2 cut(s) 68, 437
BcoDI GTCTC 4 cut(s) 115, 256, 312, 615
BfaI CTAG 1 cut(s) 669
BfoI RGCGCY 1 cut(s) 709
BisI GCNGC 5 cut(s) 306, 333, 375, 396, 636
BlsI GCNGC 5 cut(s) 307, 334, 376, 397, 637
BmcAI AGTACT 1 cut(s) 625
Bme1390I CCNGG 2 cut(s) 68, 437
BmeT110I CYCGRG 1 cut(s) 347
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 501, 595
BmrFI CCNGG 2 cut(s) 68, 437
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 2 cut(s) 64, 645
Bpu10I CCTNAGC 1 cut(s) 379
BpuEI CTTGAG 2 cut(s) 108, 274
BpuMI CCSGG 2 cut(s) 68, 437
BsaAI YACGTR 1 cut(s) 338
BsaBI GATNNNNATC 1 cut(s) 183
BsaI GGTCTC 2 cut(s) 115, 312
BsaJI CCNNGG 2 cut(s) 244, 290
BsaWI WCCGGW 1 cut(s) 596
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 328, 442, 702, 737
Bse8I GATNNNNATC 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 244, 290
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 5 cut(s) 23, 328, 442, 702, 737
BseRI GAGGAG 4 cut(s) 271, 274, 466, 720
BseXI GCAGC 3 cut(s) 317, 407, 622
BshFI GGCC 5 cut(s) 16, 80, 116, 289, 377
BshNI GGYRCC 1 cut(s) 593
BsiHKCI CYCGRG 1 cut(s) 347
BsiSI CCGG 3 cut(s) 68, 437, 597
BslFI GGGAC 2 cut(s) 263, 364
BslI CCNNNNNNNGG 5 cut(s) 23, 328, 442, 702, 737
BsmAI GTCTC 4 cut(s) 115, 256, 312, 615
BsmFI GGGAC 2 cut(s) 263, 364
BsnI GGCC 5 cut(s) 16, 80, 116, 289, 377
Bso31I GGTCTC 2 cut(s) 115, 312
BsoBI CYCGRG 1 cut(s) 347
Bsp143I GATC 1 cut(s) 83
Bsp19I CCATGG 1 cut(s) 290
BspACI CCGC 4 cut(s) 332, 363, 374, 576
BspANI GGCC 5 cut(s) 16, 80, 116, 289, 377
BspHI TCATGA 3 cut(s) 154, 535, 613
BspLI GGNNCC 2 cut(s) 501, 595
BspQI GCTCTTC 2 cut(s) 670, 675
BspT107I GGYRCC 1 cut(s) 593
BspTNI GGTCTC 2 cut(s) 115, 312
BssECI CCNNGG 2 cut(s) 244, 290
BssMI GATC 1 cut(s) 83
BssNAI GTATAC 1 cut(s) 512
BssT1I CCWWGG 2 cut(s) 244, 290
Bst1107I GTATAC 1 cut(s) 512
Bst6I CTCTTC 3 cut(s) 5, 670, 675
BstBAI YACGTR 1 cut(s) 338
BstDEI CTNAG 2 cut(s) 379, 560
BstDSI CCRYGG 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 21
BstH2I RGCGCY 1 cut(s) 709
BstHHI GCGC 2 cut(s) 229, 708
BstKTI GATC 1 cut(s) 86
BstMAI GTCTC 4 cut(s) 115, 256, 312, 615
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 2 cut(s) 371, 380
BstNSI RCATGY 1 cut(s) 100
BstSCI CCNGG 2 cut(s) 66, 435
BstV1I GCAGC 3 cut(s) 317, 407, 622
BstV2I GAAGAC 2 cut(s) 64, 645
BstZ17I GTATAC 1 cut(s) 512
BsuRI GGCC 5 cut(s) 16, 80, 116, 289, 377
BtgI CCRYGG 1 cut(s) 290
CaiI CAGNNNCTG 1 cut(s) 702
CciI TCATGA 3 cut(s) 154, 535, 613
CfoI GCGC 2 cut(s) 229, 708
Cfr13I GGNCC 1 cut(s) 79
Csp6I GTAC 2 cut(s) 594, 624
CviAII CATG 5 cut(s) 97, 155, 291, 536, 614
CviQI GTAC 2 cut(s) 594, 624
DdeI CTNAG 2 cut(s) 379, 560
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
Eam1104I CTCTTC 3 cut(s) 5, 670, 675
EarI CTCTTC 3 cut(s) 5, 670, 675
Eco130I CCWWGG 2 cut(s) 244, 290
Eco147I AGGCCT 1 cut(s) 16
Eco31I GGTCTC 2 cut(s) 115, 312
Eco57I CTGAAG 1 cut(s) 57
Eco72I CACGTG 1 cut(s) 338
Eco88I CYCGRG 1 cut(s) 347
EcoNI CCTNNNNNAGG 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 244, 290
ErhI CCWWGG 2 cut(s) 244, 290
FaeI CATG 5 cut(s) 100, 158, 294, 539, 617
FaqI GGGAC 2 cut(s) 263, 364
FatI CATG 5 cut(s) 96, 154, 290, 535, 613
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 5 cut(s) 306, 333, 375, 396, 636
Fsp4HI GCNGC 5 cut(s) 306, 333, 375, 396, 636
FspBI CTAG 1 cut(s) 669
GlaI GCGC 2 cut(s) 228, 707
GluI GCNGC 5 cut(s) 306, 333, 375, 396, 636
HaeII RGCGCY 1 cut(s) 709
HaeIII GGCC 5 cut(s) 16, 80, 116, 289, 377
HapII CCGG 3 cut(s) 68, 437, 597
HhaI GCGC 2 cut(s) 229, 708
Hin1II CATG 5 cut(s) 100, 158, 294, 539, 617
Hin6I GCGC 2 cut(s) 227, 706
HinP1I GCGC 2 cut(s) 227, 706
HinfI GANTC 5 cut(s) 32, 121, 368, 699, 716
HpaII CCGG 3 cut(s) 68, 437, 597
HphI GGTGA 2 cut(s) 38, 563
Hpy166II GTNNAC 1 cut(s) 512
Hpy188I TCNGA 3 cut(s) 37, 134, 317
Hpy188III TCNNGA 6 cut(s) 155, 239, 349, 536, 614, 738
Hpy8I GTNNAC 1 cut(s) 512
HpyAV CCTTC 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 337
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 380
HpyF3I CTNAG 2 cut(s) 379, 560
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 5 cut(s) 100, 158, 294, 539, 617
HspAI GCGC 2 cut(s) 227, 706
KpnI GGTACC 1 cut(s) 597
Kzo9I GATC 1 cut(s) 83
LguI GCTCTTC 2 cut(s) 670, 675
LpnPI CCDG 6 cut(s) 81, 450, 610, 642, 688, 709
Lsp1109I GCAGC 3 cut(s) 317, 407, 622
LweI GCATC 1 cut(s) 529
MaeI CTAG 1 cut(s) 669
MaeII ACGT 1 cut(s) 337
MaeIII GTNAC 1 cut(s) 458
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MluCI AATT 3 cut(s) 430, 486, 568
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 9 cut(s) 6, 17, 249, 252, 266, 435, 487, 736, 741
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 2 cut(s) 567, 745
MslI CAYNNNNRTG 1 cut(s) 340
MspA1I CMGCKG 2 cut(s) 308, 365
MspI CCGG 3 cut(s) 68, 437, 597
MspR9I CCNGG 2 cut(s) 68, 437
MwoI GCNNNNNNNGC 2 cut(s) 371, 380
NciI CCSGG 2 cut(s) 68, 437
NcoI CCATGG 1 cut(s) 290
NdeII GATC 1 cut(s) 83
NlaIII CATG 5 cut(s) 100, 158, 294, 539, 617
NlaIV GGNNCC 2 cut(s) 501, 595
NmeAIII GCCGAG 2 cut(s) 56, 92
NspI RCATGY 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 340
PagI TCATGA 3 cut(s) 154, 535, 613
PceI AGGCCT 1 cut(s) 16
PciSI GCTCTTC 2 cut(s) 670, 675
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 4 cut(s) 32, 368, 699, 716
PflMI CCANNNNNTGG 1 cut(s) 702
PfoI TCCNGGA 1 cut(s) 435
PkrI GCNGC 5 cut(s) 307, 334, 376, 397, 637
PleI GAGTC 1 cut(s) 115
PmaCI CACGTG 1 cut(s) 338
PmlI CACGTG 1 cut(s) 338
PpsI GAGTC 1 cut(s) 115
Ppu21I YACGTR 1 cut(s) 338
PspCI CACGTG 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 501, 595
PspPI GGNCC 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 702
PvuII CAGCTG 1 cut(s) 308
RsaI GTAC 2 cut(s) 595, 625
RsaNI GTAC 2 cut(s) 594, 624
RseI CAYNNNNRTG 1 cut(s) 340
SapI GCTCTTC 2 cut(s) 670, 675
SaqAI TTAA 2 cut(s) 567, 745
SatI GCNGC 5 cut(s) 306, 333, 375, 396, 636
Sau3AI GATC 1 cut(s) 83
Sau96I GGNCC 1 cut(s) 79
ScaI AGTACT 1 cut(s) 625
SchI GAGTC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 68, 437
SetI ASST 7 cut(s) 28, 170, 277, 310, 340, 385, 453
SfaNI GCATC 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 340
SmlI CTYRAG 2 cut(s) 123, 253
SmoI CTYRAG 2 cut(s) 123, 253
Sse9I AATT 3 cut(s) 430, 486, 568
SseBI AGGCCT 1 cut(s) 16
SsiI CCGC 4 cut(s) 332, 363, 374, 576
SspMI CTAG 1 cut(s) 669
StuI AGGCCT 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 66, 435
StyI CCWWGG 2 cut(s) 244, 290
TaiI ACGT 1 cut(s) 340
TasI AATT 3 cut(s) 430, 486, 568
TatI WGTACW 1 cut(s) 623
TauI GCSGC 2 cut(s) 335, 377
TfiI GAWTC 4 cut(s) 32, 368, 699, 716
Tru1I TTAA 2 cut(s) 567, 745
Tru9I TTAA 2 cut(s) 567, 745
TseI GCWGC 3 cut(s) 305, 395, 635
TspDTI ATGAA 2 cut(s) 45, 405
Van91I CCANNNNNTGG 1 cut(s) 702
XagI CCTNNNNNAGG 1 cut(s) 21
XapI RAATTY 1 cut(s) 486
XceI RCATGY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XmiI GTMKAC 1 cut(s) 511
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 669
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.