Rh7BG098900

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012764
Physical Location & Seq
Reverse (-)
7297638 .. 7298662
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG098900.1

Sequence Viewer

Length: 801 bp
ATGGTATCAGCTCTATCTCAGGTGATTGCAAACACTCATGAACAAAACCCGCTTCAACTTGATCATCAAGTTCATGGTATCCCACTAATAATTTCAGCAGATAATCAAGTTGAGCAATCTAAACCTACAGTAGTTCTTCAAGCTCAAGGGAATATGAGACAACACTATAGGGGAGTGAGGCGGAGGCCATGGGGGAAGTGGGCAGCCGAGATTCGTGATCCGCAGAAGGCAGCTCGAGTGTGGCTCGGGACTTTCGAATCAGCAGAGGCTGCAGCACTTGCTTACGACGAAGCAGCTCTCAGGTTCAAAGGAAGCAAGGCTAAGCTTAACTTCCCCGAAAGAGTTCAAGGGATCAGCCCTAGTACTTCAAGTGGTCGCTACCTTGCAATAAGTAGTACCGATCATGATCAGCGAGTAGACAATTCAGCTCCTCCAGCTGCGCCGATTTCTCAACCAACAACCTATAGTATTCCAAATGATATTAATTTTGATTATGATGCACAACATCTTGGGAGTAGCACTACAAGTAACAGAAATGTTGATTTCGGTGTATCATCATCTCAAAACTACGGACAAGAAAGAATTATGCCGGAGATTAATGTACCAACGACTTCTTCTTCTACATCCTCGGACTCTTCCATGCCATCTCATCATCAAGAAGTACGACTACAGCAGCAAGGAGATCAGCAGCAACTCTTAAGGTTTCCGATGATGCCCCTTGGCGGTTCATCTTCGAGCTCATCAGATCCTCCTGCTAAGTACAGGAGAGACTCCTCTGGGAGCGGTGACTTTAGAAGATGA

Protein Analysis

266

Amino Acids

29.23

Weight (kDa)

7.11

Isoelectric Point (pI)

60.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 55 - 104 7.7e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012764)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07310 AT5G61890
fragaria_vesca FvH4_5g09520
malus_domestica MD06G1130100.v1.1 MD06G1130300.v1.1 MD14G1147100.v1.1
prunus_persica Prupe.5G141200_v2.0.a1
pyrus_communis pycom14g12170
rosa_chinensis RchiOBHm_Chr7g0188681
rosa_laevigata RLG00000004671
rosa_multiflora Rmu_sc0001576.1_g000027
rosa_roxburghii Rroxscaffold_3G00266140
rosa_rugosa Rorug06G0492200
rosa_samantha Rh7AG097100 Rh7BG098900 Rh7CG100700 Rh7DG099300
rosa_wichuraiana Rw7G008400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 783
AccI GTMKAC 1 cut(s) 417
AciI CCGC 5 cut(s) 50, 181, 221, 723, 783
AclWI GGATC 3 cut(s) 212, 359, 740
AfaI GTAC 5 cut(s) 364, 397, 603, 663, 761
AfiI CCNNNNNNNGG 1 cut(s) 722
AflII CTTAAG 1 cut(s) 697
AgsI TTSAA 5 cut(s) 56, 140, 307, 347, 369
AjuI GAANNNNNNNTTGG 2 cut(s) 598, 630
AluBI AGCT 8 cut(s) 11, 143, 233, 296, 325, 428, 437, 738
AluI AGCT 8 cut(s) 11, 143, 233, 296, 325, 428, 437, 738
Alw21I GWGCWC 1 cut(s) 740
Alw26I GTCTC 2 cut(s) 151, 762
AlwI GGATC 3 cut(s) 212, 359, 740
AlwNI CAGNNNCTG 1 cut(s) 269
Ama87I CYCGRG 2 cut(s) 234, 245
AoxI GGCC 1 cut(s) 185
ApeKI GCWGC 8 cut(s) 203, 230, 269, 272, 293, 437, 673, 688
AseI ATTAAT 2 cut(s) 483, 597
Asp700I GAANNNNTTC 1 cut(s) 342
AspLEI GCGC 1 cut(s) 442
AsuHPI GGTGA 2 cut(s) 34, 797
AsuII TTCGAA 1 cut(s) 255
AvaI CYCGRG 2 cut(s) 234, 245
BanII GRGCYC 1 cut(s) 740
BarI GAAGNNNNNNTAC 2 cut(s) 651, 683
Bbv12I GWGCWC 1 cut(s) 740
BbvI GCAGC 8 cut(s) 215, 242, 256, 284, 305, 424, 685, 700
BccI CCATC 1 cut(s) 652
BciVI GTATCC 1 cut(s) 89
BclI TGATCA 2 cut(s) 61, 406
BcoDI GTCTC 2 cut(s) 151, 762
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 5 cut(s) 126, 166, 270, 463, 668
BfrI CTTAAG 1 cut(s) 697
BfuI GTATCC 1 cut(s) 89
BisI GCNGC 8 cut(s) 204, 231, 270, 273, 294, 438, 674, 689
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 8 cut(s) 205, 232, 271, 274, 295, 439, 675, 690
BmcAI AGTACT 1 cut(s) 364
BmeT110I CYCGRG 2 cut(s) 234, 245
BmsI GCATC 2 cut(s) 487, 702
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 1 cut(s) 417
Bpu1102I GCTNAGC 1 cut(s) 321
Bpu14I TTCGAA 1 cut(s) 255
BpuEI CTTGAG 1 cut(s) 129
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 188, 627, 718
Bsc4I CCNNNNNNNGG 1 cut(s) 722
Bse8I GATNNNNATC 1 cut(s) 405
BseDI CCNNGG 3 cut(s) 188, 627, 718
BseGI GGATG 1 cut(s) 623
BseJI GATNNNNATC 1 cut(s) 405
BseLI CCNNNNNNNGG 1 cut(s) 722
BseMII CTCAG 2 cut(s) 32, 313
BseRI GAGGAG 2 cut(s) 420, 763
BseXI GCAGC 8 cut(s) 215, 242, 256, 284, 305, 424, 685, 700
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 740
BsiHKCI CYCGRG 2 cut(s) 234, 245
BsiSI CCGG 1 cut(s) 590
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 1 cut(s) 722
BsmAI GTCTC 2 cut(s) 151, 762
BsmFI GGGAC 1 cut(s) 262
BsnI GGCC 1 cut(s) 187
BsoBI CYCGRG 2 cut(s) 234, 245
Bsp119I TTCGAA 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 740
Bsp143I GATC 7 cut(s) 61, 217, 351, 400, 406, 682, 745
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 188
BspACI CCGC 5 cut(s) 50, 181, 221, 723, 783
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 2 cut(s) 31, 312
BspHI TCATGA 2 cut(s) 37, 403
BspMAI CTGCAG 1 cut(s) 274
BspPI GGATC 3 cut(s) 212, 359, 740
BspT104I TTCGAA 1 cut(s) 255
BspTI CTTAAG 1 cut(s) 697
BsrBI CCGCTC 1 cut(s) 783
BssECI CCNNGG 3 cut(s) 188, 627, 718
BssMI GATC 7 cut(s) 61, 217, 351, 400, 406, 682, 745
BssT1I CCWWGG 2 cut(s) 188, 718
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 640
BstAFI CTTAAG 1 cut(s) 697
BstAPI GCANNNNNTGC 2 cut(s) 269, 278
BstBI TTCGAA 1 cut(s) 255
BstDEI CTNAG 4 cut(s) 18, 299, 321, 756
BstDSI CCRYGG 1 cut(s) 188
BstF5I GGATG 1 cut(s) 623
BstHHI GCGC 1 cut(s) 442
BstKTI GATC 7 cut(s) 64, 220, 354, 403, 409, 685, 748
BstMAI GTCTC 2 cut(s) 151, 762
BstMBI GATC 7 cut(s) 61, 217, 351, 400, 406, 682, 745
BstMWI GCNNNNNNNGC 3 cut(s) 269, 278, 434
BstSFI CTRYAG 5 cut(s) 126, 166, 270, 463, 668
BstV1I GCAGC 8 cut(s) 215, 242, 256, 284, 305, 424, 685, 700
BstX2I RGATCY 1 cut(s) 745
BstYI RGATCY 1 cut(s) 745
BsuI GTATCC 1 cut(s) 89
BsuRI GGCC 1 cut(s) 187
BtgI CCRYGG 1 cut(s) 188
BtsCI GGATG 1 cut(s) 623
CaiI CAGNNNCTG 1 cut(s) 269
CciI TCATGA 2 cut(s) 37, 403
CfoI GCGC 1 cut(s) 442
Csp6I GTAC 5 cut(s) 363, 396, 602, 662, 760
CviAII CATG 5 cut(s) 38, 74, 189, 404, 640
CviQI GTAC 5 cut(s) 363, 396, 602, 662, 760
DdeI CTNAG 4 cut(s) 18, 299, 321, 756
DpnI GATC 7 cut(s) 63, 219, 353, 402, 408, 684, 747
DpnII GATC 7 cut(s) 61, 217, 351, 400, 406, 682, 745
Eam1104I CTCTTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 640
EciI GGCGGA 1 cut(s) 196
Ecl136II GAGCTC 1 cut(s) 738
Eco130I CCWWGG 2 cut(s) 188, 718
Eco24I GRGCYC 1 cut(s) 740
Eco53kI GAGCTC 1 cut(s) 738
Eco88I CYCGRG 2 cut(s) 234, 245
EcoICRI GAGCTC 1 cut(s) 738
EcoT14I CCWWGG 2 cut(s) 188, 718
EcoT38I GRGCYC 1 cut(s) 740
ErhI CCWWGG 2 cut(s) 188, 718
FaeI CATG 5 cut(s) 41, 77, 192, 407, 643
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FaqI GGGAC 1 cut(s) 262
FatI CATG 5 cut(s) 37, 73, 188, 403, 639
FauI CCCGC 1 cut(s) 57
FbaI TGATCA 2 cut(s) 61, 406
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 8 cut(s) 204, 231, 270, 273, 294, 438, 674, 689
FokI GGATG 1 cut(s) 610
FriOI GRGCYC 1 cut(s) 740
Fsp4HI GCNGC 8 cut(s) 204, 231, 270, 273, 294, 438, 674, 689
FspBI CTAG 1 cut(s) 360
GlaI GCGC 1 cut(s) 441
GluI GCNGC 8 cut(s) 204, 231, 270, 273, 294, 438, 674, 689
GsuI CTGGAG 1 cut(s) 417
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 590
HhaI GCGC 1 cut(s) 442
Hin1II CATG 5 cut(s) 41, 77, 192, 407, 643
Hin6I GCGC 1 cut(s) 440
HinP1I GCGC 1 cut(s) 440
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 4 cut(s) 211, 257, 632, 770
HpaII CCGG 1 cut(s) 590
HphI GGTGA 2 cut(s) 34, 797
Hpy166II GTNNAC 1 cut(s) 418
Hpy188I TCNGA 3 cut(s) 631, 708, 745
Hpy188III TCNNGA 5 cut(s) 38, 215, 247, 404, 656
Hpy8I GTNNAC 1 cut(s) 418
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 4 cut(s) 29, 272, 386, 500
HpyF10VI GCNNNNNNNGC 3 cut(s) 269, 278, 434
HpyF3I CTNAG 4 cut(s) 18, 299, 321, 756
Hsp92II CATG 5 cut(s) 41, 77, 192, 407, 643
HspAI GCGC 1 cut(s) 440
Ksp22I TGATCA 2 cut(s) 61, 406
Kzo9I GATC 7 cut(s) 61, 217, 351, 400, 406, 682, 745
LmnI GCTCC 2 cut(s) 433, 780
LpnPI CCDG 7 cut(s) 5, 286, 447, 603, 748, 762, 765
Lsp1109I GCAGC 8 cut(s) 215, 242, 256, 284, 305, 424, 685, 700
LweI GCATC 2 cut(s) 487, 702
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 527, 785
MalI GATC 7 cut(s) 63, 219, 353, 402, 408, 684, 747
MbiI CCGCTC 1 cut(s) 783
MboI GATC 7 cut(s) 61, 217, 351, 400, 406, 682, 745
MboII GAAGA 5 cut(s) 128, 606, 609, 627, 723
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 1 cut(s) 740
MluCI AATT 4 cut(s) 90, 421, 484, 582
MlyI GAGTC 2 cut(s) 626, 764
MnlI CCTC 7 cut(s) 171, 177, 259, 441, 637, 759, 784
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 4 cut(s) 327, 483, 597, 698
MspA1I CMGCKG 1 cut(s) 437
MspCI CTTAAG 1 cut(s) 697
MspI CCGG 1 cut(s) 590
MwoI GCNNNNNNNGC 3 cut(s) 269, 278, 434
NcoI CCATGG 1 cut(s) 188
NdeII GATC 7 cut(s) 61, 217, 351, 400, 406, 682, 745
NlaIII CATG 5 cut(s) 41, 77, 192, 407, 643
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 785
NspV TTCGAA 1 cut(s) 255
PaeR7I CTCGAG 1 cut(s) 234
PagI TCATGA 2 cut(s) 37, 403
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 2 cut(s) 211, 257
PkrI GCNGC 8 cut(s) 205, 232, 271, 274, 295, 439, 675, 690
PleI GAGTC 2 cut(s) 626, 764
PpsI GAGTC 2 cut(s) 626, 764
PshBI ATTAAT 2 cut(s) 483, 597
Psp124BI GAGCTC 1 cut(s) 740
PspXI VCTCGAGB 1 cut(s) 234
PstI CTGCAG 1 cut(s) 274
PstNI CAGNNNCTG 1 cut(s) 269
PsuI RGATCY 1 cut(s) 745
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 5 cut(s) 364, 397, 603, 663, 761
RsaNI GTAC 5 cut(s) 363, 396, 602, 662, 760
SacI GAGCTC 1 cut(s) 740
SaqAI TTAA 4 cut(s) 327, 483, 597, 698
SatI GCNGC 8 cut(s) 204, 231, 270, 273, 294, 438, 674, 689
Sau3AI GATC 7 cut(s) 61, 217, 351, 400, 406, 682, 745
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 2 cut(s) 626, 764
SduI GDGCHC 1 cut(s) 740
SfaNI GCATC 2 cut(s) 487, 702
SfcI CTRYAG 5 cut(s) 126, 166, 270, 463, 668
Sfr274I CTCGAG 1 cut(s) 234
SfuI TTCGAA 1 cut(s) 255
SlaI CTCGAG 1 cut(s) 234
SmlI CTYRAG 3 cut(s) 144, 234, 697
SmoI CTYRAG 3 cut(s) 144, 234, 697
Sse9I AATT 4 cut(s) 90, 421, 484, 582
SsiI CCGC 5 cut(s) 50, 181, 221, 723, 783
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 740
StyI CCWWGG 2 cut(s) 188, 718
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 3 cut(s) 235, 255, 734
TasI AATT 4 cut(s) 90, 421, 484, 582
TatI WGTACW 2 cut(s) 362, 759
TfiI GAWTC 2 cut(s) 211, 257
Tru1I TTAA 4 cut(s) 327, 483, 597, 698
Tru9I TTAA 4 cut(s) 327, 483, 597, 698
TseFI GTSAC 1 cut(s) 785
TseI GCWGC 8 cut(s) 203, 230, 269, 272, 293, 437, 673, 688
Tsp45I GTSAC 1 cut(s) 785
TspDTI ATGAA 3 cut(s) 54, 62, 717
TspGWI ACGGA 1 cut(s) 585
Vha464I CTTAAG 1 cut(s) 697
VspI ATTAAT 2 cut(s) 483, 597
XcmI CCANNNNNNNNNTGG 1 cut(s) 195
XhoI CTCGAG 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 417
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 1 cut(s) 360
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.