Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001576.1

Orthogroup ID

OG0012764

Physical Location & Seq

Genomic Coordinates Reverse (-)

112705 .. 115716

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001576.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atggcagctccaccatgtccacgcgcacgacaccaccacccctgccgtctgcgtcaaaccgtacccatggctcaccacgaatcccagcgactcaatctgagacagaaccgccacgggcagcggagctccggaggtcatgatctgcttttggctcggcttggacaattcgaattcggctcggcttggacaattcgaactgcctttcaatacccagccgatcggtttcggcgcgggtcggacgggatcgtggatcggaaacatgggaagaggccacttccttcgaatgaatcggagaagaaagaggaggaggtggagtatcatcgaaatatcttcccggtttactcaagtagatctcaacaagataattctgccatggtatcagctctatctcaggtgattgcaaacgctcatgaacaaaacccgcttcaacttgatcatcaagttcatggtatcccactaataatttcagcagataatcatgttgagcaatctaaacctgcagtagtttttcaagctcaagggaatatgagacaacactataggggagtgaggcggaggccatgggggaagtgggcagccgagattcgtgatccgcagaaggcagctcgagtgtggctcgggactttcgaatcagcagaggctgcagcacttgcttacgatgaagcagctctcaggttcaaaggaagcaaggctaagcttaacttccccgaaagagttcaagggatcagccctagtacttctagtggtcgctaccttgcaataagtagtatcgatcatgatcagcgagtagacaattcagctcctccagctgcgccgatttctcaactaacaacctatagtattccaaatgatattaattttgattatgatgcacaacatcttgggagtagtactacaagtaacagaaatgttgattttggtgtatcatcatctcaaaactacggacaagaaagaattatgccggagattaatgtaccaacgacttcttcttctacatcctcgggctcttccatgccatctcatcatcaagaagtacgactacagcagcaagaagatcagcagcaactcttaaggcttccgatgatgccctttggcggttcatcttcgagctcatcagatcctcctgctaagtacaggagagactcctctgggaggggtgactatagaagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

390

Amino Acids

43.7

Weight (kDa)

9.6

Isoelectric Point (pI)

61.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07310 AT5G61890
fragaria_vesca	FvH4_5g09520
malus_domestica	MD06G1130100.v1.1 MD06G1130300.v1.1 MD14G1147100.v1.1
prunus_persica	Prupe.5G141200_v2.0.a1
pyrus_communis	pycom14g12170
rosa_chinensis	RchiOBHm_Chr7g0188681
rosa_laevigata	RLG00000004671
rosa_multiflora	Rmu_sc0001576.1_g000027
rosa_roxburghii	Rroxscaffold_3G00266140
rosa_rugosa	Rorug06G0492200
rosa_samantha	Rh7AG097100 Rh7BG098900 Rh7CG100700 Rh7DG099300
rosa_wichuraiana	Rw7G008400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	505
AccI	GTMKAC	1 cut(s)	789
AccII	CGCG	2 cut(s)	24, 231
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	7 cut(s)	109, 121, 231, 422, 553, 593, 1095
AclWI	GGATC	5 cut(s)	251, 258, 584, 731, 1112
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	6 cut(s)	63, 736, 892, 975, 1035, 1133
AfiI	CCNNNNNNNGG	2 cut(s)	1094, 1152
AflII	CTTAAG	1 cut(s)	1069
AgsI	TTSAA	5 cut(s)	206, 428, 512, 679, 719
AjuI	GAANNNNNNNTTGG	2 cut(s)	970, 1002
Alw21I	GWGCWC	2 cut(s)	128, 1112
Alw26I	GTCTC	3 cut(s)	94, 523, 1134
AlwI	GGATC	5 cut(s)	251, 258, 584, 731, 1112
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	3 cut(s)	606, 617, 1000
Aor13HI	TCCGGA	1 cut(s)	128
AoxI	GGCC	2 cut(s)	269, 557
ApoI	RAATTY	1 cut(s)	170
AseI	ATTAAT	2 cut(s)	855, 969
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	3 cut(s)	26, 231, 814
AsuC2I	CCSGG	1 cut(s)	335
AsuHPI	GGTGA	3 cut(s)	65, 406, 1169
AsuII	TTCGAA	4 cut(s)	168, 193, 281, 627
AvaI	CYCGRG	3 cut(s)	606, 617, 1000
BanII	GRGCYC	3 cut(s)	128, 1007, 1112
BarI	GAAGNNNNNNTAC	2 cut(s)	1023, 1055
Bbv12I	GWGCWC	2 cut(s)	128, 1112
BccI	CCATC	1 cut(s)	1024
BceAI	ACGGC	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	461
BclI	TGATCA	2 cut(s)	433, 778
BcnI	CCSGG	1 cut(s)	335
BcoDI	GTCTC	3 cut(s)	94, 523, 1134
BfaI	CTAG	2 cut(s)	732, 741
BfmI	CTRYAG	6 cut(s)	498, 538, 642, 835, 1040, 1162
BfrI	CTTAAG	1 cut(s)	1069
BfuAI	ACCTGC	1 cut(s)	505
BfuI	GTATCC	1 cut(s)	461
BglII	AGATCT	1 cut(s)	350
BlpI	GCTNAGC	1 cut(s)	693
BmcAI	AGTACT	2 cut(s)	736, 892
Bme1390I	CCNGG	1 cut(s)	335
BmeT110I	CYCGRG	3 cut(s)	606, 617, 1000
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	2 cut(s)	859, 1074
BplI	GAGNNNNNCTC	2 cut(s)	600, 632
BpmI	CTGGAG	1 cut(s)	789
Bpu1102I	GCTNAGC	1 cut(s)	693
Bpu14I	TTCGAA	4 cut(s)	168, 193, 281, 627
BpuEI	CTTGAG	2 cut(s)	328, 501
BpuMI	CCSGG	1 cut(s)	335
Bsa29I	ATCGAT	1 cut(s)	771
BsaBI	GATNNNNATC	1 cut(s)	777
BsaJI	CCNNGG	5 cut(s)	66, 112, 372, 560, 999
BsaWI	WCCGGW	1 cut(s)	128
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	1094, 1152
Bse8I	GATNNNNATC	1 cut(s)	777
BseAI	TCCGGA	1 cut(s)	128
BseCI	ATCGAT	1 cut(s)	771
BseDI	CCNNGG	5 cut(s)	66, 112, 372, 560, 999
BseGI	GGATG	1 cut(s)	995
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	2 cut(s)	1094, 1152
BseMII	CTCAG	3 cut(s)	89, 404, 685
BseRI	GAGGAG	4 cut(s)	317, 320, 792, 1135
BseYI	CCCAGC	2 cut(s)	84, 211
Bsh1236I	CGCG	2 cut(s)	24, 231
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	271, 559
BshVI	ATCGAT	1 cut(s)	771
BsiEI	CGRYCG	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	128, 1112
BsiHKCI	CYCGRG	3 cut(s)	606, 617, 1000
BsiSI	CCGG	3 cut(s)	129, 335, 962
BslFI	GGGAC	1 cut(s)	634
BslI	CCNNNNNNNGG	2 cut(s)	1094, 1152
BsmAI	GTCTC	3 cut(s)	94, 523, 1134
BsmFI	GGGAC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	271, 559
BsoBI	CYCGRG	3 cut(s)	606, 617, 1000
Bsp119I	TTCGAA	4 cut(s)	168, 193, 281, 627
Bsp1286I	GDGCHC	3 cut(s)	128, 1007, 1112
Bsp13I	TCCGGA	1 cut(s)	128
Bsp1720I	GCTNAGC	1 cut(s)	693
Bsp19I	CCATGG	3 cut(s)	66, 372, 560
BspACI	CCGC	7 cut(s)	109, 121, 231, 422, 553, 593, 1095
BspANI	GGCC	2 cut(s)	271, 559
BspCNI	CTCAG	3 cut(s)	90, 403, 684
BspDI	ATCGAT	1 cut(s)	771
BspEI	TCCGGA	1 cut(s)	128
BspFNI	CGCG	2 cut(s)	24, 231
BspHI	TCATGA	3 cut(s)	136, 409, 775
BspMAI	CTGCAG	2 cut(s)	502, 646
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	5 cut(s)	251, 258, 584, 731, 1112
BspQI	GCTCTTC	1 cut(s)	1012
BspT104I	TTCGAA	4 cut(s)	168, 193, 281, 627
BspTI	CTTAAG	1 cut(s)	1069
BssECI	CCNNGG	5 cut(s)	66, 112, 372, 560, 999
BssT1I	CCWWGG	3 cut(s)	66, 372, 560
Bst4CI	ACNGT	1 cut(s)	61
Bst6I	CTCTTC	2 cut(s)	260, 1012
BstAFI	CTTAAG	1 cut(s)	1069
BstAPI	GCANNNNNTGC	2 cut(s)	641, 650
BstBI	TTCGAA	4 cut(s)	168, 193, 281, 627
BstDEI	CTNAG	5 cut(s)	98, 390, 671, 693, 1128
BstDSI	CCRYGG	4 cut(s)	66, 112, 372, 560
BstENI	CCTNNNNNAGG	1 cut(s)	1150
BstF5I	GGATG	1 cut(s)	995
BstFNI	CGCG	2 cut(s)	24, 231
BstHHI	GCGC	3 cut(s)	26, 231, 814
BstMAI	GTCTC	3 cut(s)	94, 523, 1134
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	641, 650, 806
BstSCI	CCNGG	1 cut(s)	333
BstSFI	CTRYAG	6 cut(s)	498, 538, 642, 835, 1040, 1162
BstUI	CGCG	2 cut(s)	24, 231
BstX2I	RGATCY	2 cut(s)	350, 1117
BstYI	RGATCY	2 cut(s)	350, 1117
Bsu15I	ATCGAT	1 cut(s)	771
BsuI	GTATCC	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	271, 559
BsuTUI	ATCGAT	1 cut(s)	771
BtgI	CCRYGG	4 cut(s)	66, 112, 372, 560
BtsCI	GGATG	1 cut(s)	995
BveI	ACCTGC	1 cut(s)	505
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	3 cut(s)	136, 409, 775
CfoI	GCGC	3 cut(s)	26, 231, 814
ClaI	ATCGAT	1 cut(s)	771
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	6 cut(s)	62, 735, 891, 974, 1034, 1132
CviQI	GTAC	6 cut(s)	62, 735, 891, 974, 1034, 1132
DdeI	CTNAG	5 cut(s)	98, 390, 671, 693, 1128
Eam1104I	CTCTTC	2 cut(s)	260, 1012
EarI	CTCTTC	2 cut(s)	260, 1012
EciI	GGCGGA	1 cut(s)	568
Ecl136II	GAGCTC	2 cut(s)	126, 1110
Eco130I	CCWWGG	3 cut(s)	66, 372, 560
Eco24I	GRGCYC	3 cut(s)	128, 1007, 1112
Eco53kI	GAGCTC	2 cut(s)	126, 1110
Eco88I	CYCGRG	3 cut(s)	606, 617, 1000
EcoICRI	GAGCTC	2 cut(s)	126, 1110
EcoNI	CCTNNNNNAGG	1 cut(s)	1150
EcoRI	GAATTC	1 cut(s)	170
EcoT14I	CCWWGG	3 cut(s)	66, 372, 560
EcoT38I	GRGCYC	3 cut(s)	128, 1007, 1112
ErhI	CCWWGG	3 cut(s)	66, 372, 560
FalI	AAGNNNNNCTT	2 cut(s)	686, 718
FaqI	GGGAC	1 cut(s)	634
FauI	CCCGC	2 cut(s)	224, 429
FbaI	TGATCA	2 cut(s)	433, 778
FblI	GTMKAC	1 cut(s)	789
FokI	GGATG	1 cut(s)	982
FriOI	GRGCYC	3 cut(s)	128, 1007, 1112
FspBI	CTAG	2 cut(s)	732, 741
GlaI	GCGC	3 cut(s)	25, 230, 813
GsaI	CCCAGC	2 cut(s)	88, 215
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	271, 559
HapII	CCGG	3 cut(s)	129, 335, 962
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	3 cut(s)	26, 231, 814
Hin6I	GCGC	3 cut(s)	24, 229, 812
HinP1I	GCGC	3 cut(s)	24, 229, 812
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	6 cut(s)	80, 90, 287, 583, 629, 1142
HpaII	CCGG	3 cut(s)	129, 335, 962
HphI	GGTGA	3 cut(s)	65, 406, 1169
Hpy166II	GTNNAC	3 cut(s)	20, 340, 790
Hpy188I	TCNGA	6 cut(s)	99, 238, 255, 292, 1080, 1117
Hpy188III	TCNNGA	7 cut(s)	129, 137, 410, 587, 619, 776, 1028
Hpy8I	GTNNAC	3 cut(s)	20, 340, 790
HpyAV	CCTTC	2 cut(s)	288, 592
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	5 cut(s)	401, 500, 644, 758, 872
HpyF10VI	GCNNNNNNNGC	3 cut(s)	641, 650, 806
HpyF3I	CTNAG	5 cut(s)	98, 390, 671, 693, 1128
HspAI	GCGC	3 cut(s)	24, 229, 812
Kpn2I	TCCGGA	1 cut(s)	128
Ksp22I	TGATCA	2 cut(s)	433, 778
LguI	GCTCTTC	1 cut(s)	1012
LmnI	GCTCC	4 cut(s)	13, 123, 131, 805
LweI	GCATC	2 cut(s)	859, 1074
MaeI	CTAG	2 cut(s)	732, 741
MaeIII	GTNAC	2 cut(s)	899, 1157
MboII	GAAGA	8 cut(s)	277, 307, 322, 978, 981, 999, 1064, 1095
MflI	RGATCY	2 cut(s)	350, 1117
MhlI	GDGCHC	3 cut(s)	128, 1007, 1112
MluCI	AATT	8 cut(s)	164, 170, 189, 364, 462, 793, 856, 954
MlyI	GAGTC	2 cut(s)	84, 1136
MmeI	TCCRAC	1 cut(s)	216
MroI	TCCGGA	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	4 cut(s)	699, 855, 969, 1070
MspA1I	CMGCKG	2 cut(s)	121, 809
MspCI	CTTAAG	1 cut(s)	1069
MspI	CCGG	3 cut(s)	129, 335, 962
MspR9I	CCNGG	1 cut(s)	335
MvnI	CGCG	2 cut(s)	24, 231
MwoI	GCNNNNNNNGC	3 cut(s)	641, 650, 806
NciI	CCSGG	1 cut(s)	335
NcoI	CCATGG	3 cut(s)	66, 372, 560
NmeAIII	GCCGAG	3 cut(s)	133, 158, 604
NmuCI	GTSAC	1 cut(s)	1157
NspV	TTCGAA	4 cut(s)	168, 193, 281, 627
PaeR7I	CTCGAG	1 cut(s)	606
PagI	TCATGA	3 cut(s)	136, 409, 775
PciSI	GCTCTTC	1 cut(s)	1012
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	4 cut(s)	80, 287, 583, 629
Ple19I	CGATCG	1 cut(s)	220
PleI	GAGTC	2 cut(s)	84, 1136
PpsI	GAGTC	2 cut(s)	84, 1136
PshBI	ATTAAT	2 cut(s)	855, 969
Psp124BI	GAGCTC	2 cut(s)	128, 1112
PspFI	CCCAGC	2 cut(s)	84, 211
PspXI	VCTCGAGB	1 cut(s)	606
PstI	CTGCAG	2 cut(s)	502, 646
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	2 cut(s)	350, 1117
PvuI	CGATCG	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	809
RsaI	GTAC	6 cut(s)	63, 736, 892, 975, 1035, 1133
RsaNI	GTAC	6 cut(s)	62, 735, 891, 974, 1034, 1132
SacI	GAGCTC	2 cut(s)	128, 1112
SapI	GCTCTTC	1 cut(s)	1012
SaqAI	TTAA	4 cut(s)	699, 855, 969, 1070
ScaI	AGTACT	2 cut(s)	736, 892
SchI	GAGTC	2 cut(s)	84, 1136
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	3 cut(s)	128, 1007, 1112
SfaNI	GCATC	2 cut(s)	859, 1074
SfcI	CTRYAG	6 cut(s)	498, 538, 642, 835, 1040, 1162
Sfr274I	CTCGAG	1 cut(s)	606
SfuI	TTCGAA	4 cut(s)	168, 193, 281, 627
SlaI	CTCGAG	1 cut(s)	606
SmlI	CTYRAG	4 cut(s)	343, 516, 606, 1069
SmoI	CTYRAG	4 cut(s)	343, 516, 606, 1069
Sse9I	AATT	8 cut(s)	164, 170, 189, 364, 462, 793, 856, 954
SsiI	CCGC	7 cut(s)	109, 121, 231, 422, 553, 593, 1095
SspMI	CTAG	2 cut(s)	732, 741
SstI	GAGCTC	2 cut(s)	128, 1112
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	3 cut(s)	66, 372, 560
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	8 cut(s)	168, 193, 281, 322, 607, 627, 771, 1106
TasI	AATT	8 cut(s)	164, 170, 189, 364, 462, 793, 856, 954
TatI	WGTACW	3 cut(s)	734, 890, 1131
TfiI	GAWTC	4 cut(s)	80, 287, 583, 629
Tru1I	TTAA	4 cut(s)	699, 855, 969, 1070
Tru9I	TTAA	4 cut(s)	699, 855, 969, 1070
TseFI	GTSAC	1 cut(s)	1157
Tsp45I	GTSAC	1 cut(s)	1157
TspDTI	ATGAA	5 cut(s)	300, 426, 434, 675, 1089
TspGWI	ACGGA	1 cut(s)	957
Vha464I	CTTAAG	1 cut(s)	1069
VspI	ATTAAT	2 cut(s)	855, 969
XagI	CCTNNNNNAGG	1 cut(s)	1150
XapI	RAATTY	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	567
XhoI	CTCGAG	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	789
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	2 cut(s)	732, 741
ZrmI	AGTACT	2 cut(s)	736, 892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.