Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0012764

Physical Location & Seq

Genomic Coordinates Reverse (-)

15212105 .. 15213101

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGTTTCAGCTCTAGCTCAGGTGATCGGAAATAATAGTGACCAAATTAATAACCCACTTGATCAAGTGCAAGGAATAAGTTCGTTAATCACCTCACAGTCTAGCCCTACCGAGACTCAATCTCAACCAGTACTACTTCAAGATCAAGGGAATTTGAGGAGACAACACTATAGAGGAGTGAGGCGGAGACCATGGGGAAAGTGGGCGGCGGAGATTCGTGATCCGAATAAGGCAGCCCGAGTGTGGCTCGGCACTTTCAACACAGCCGAGGCTGCAGCTCTAGCTTATGATAGAGCTGCTCTCAGGTTCAAAGGAAGCAAAGCTAAGCTCAACTTCCCCGAAAGAGTAGTTCAAGGGAGCTCTGAGTCAGGTTGTCTCACACTAACTACTCAATTACAATACAGCTTGAACAATATTCCTCCTGAGGCTAATATTTCTCGACCAACATATTCCAATGTTTTCGATTATGCACGATATAATAATGTCACATCTACGTCGTCGTCCTCCATGCCATCTCAACAAGCTGCAGAGCTCCAAAGCTTTTCGATGCAGTTTGGTTCTTCTTCAAGTTCGAGTTCGGTTCCTCCTTATAAGTATAGGAAAGACTTTGACGGAAGTCACTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

210

Amino Acids

23.07

Weight (kDa)

9.71

Isoelectric Point (pI)

67.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07310 AT5G61890
fragaria_vesca	FvH4_5g09520
malus_domestica	MD06G1130100.v1.1 MD06G1130300.v1.1 MD14G1147100.v1.1
prunus_persica	Prupe.5G141200_v2.0.a1
pyrus_communis	pycom14g12170
rosa_chinensis	RchiOBHm_Chr7g0188681
rosa_laevigata	RLG00000004671
rosa_multiflora	Rmu_sc0001576.1_g000027
rosa_roxburghii	Rroxscaffold_3G00266140
rosa_rugosa	Rorug06G0492200
rosa_samantha	Rh7AG097100 Rh7BG098900 Rh7CG100700 Rh7DG099300
rosa_wichuraiana	Rw7G008400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	591
AciI	CCGC	3 cut(s)	184, 206, 209
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	151
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	243
AgsI	TTSAA	6 cut(s)	140, 259, 310, 353, 409, 567
Alw21I	GWGCWC	2 cut(s)	362, 534
Alw26I	GTCTC	4 cut(s)	107, 154, 181, 380
AlwI	GGATC	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	237
ApeKI	GCWGC	5 cut(s)	233, 272, 275, 296, 524
ApoI	RAATTY	1 cut(s)	151
AseI	ATTAAT	1 cut(s)	48
Asp700I	GAANNNNTTC	1 cut(s)	79
AsuHPI	GGTGA	2 cut(s)	34, 82
AvaI	CYCGRG	1 cut(s)	237
AxyI	CCTNAGG	1 cut(s)	423
BanII	GRGCYC	2 cut(s)	362, 534
Bbv12I	GWGCWC	2 cut(s)	362, 534
BbvI	GCAGC	5 cut(s)	245, 259, 283, 287, 511
BccI	CCATC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	4 cut(s)	107, 154, 181, 380
BfaI	CTAG	3 cut(s)	14, 102, 281
BfmI	CTRYAG	3 cut(s)	169, 273, 525
BisI	GCNGC	6 cut(s)	207, 234, 273, 276, 297, 525
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	6 cut(s)	208, 235, 274, 277, 298, 526
BmcAI	AGTACT	1 cut(s)	132
BmeT110I	CYCGRG	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	582
BmsI	GCATC	1 cut(s)	537
BoxI	GACNNNNGTC	1 cut(s)	615
BplI	GAGNNNNNCTC	4 cut(s)	231, 263, 285, 317
Bpu10I	CCTNAGC	1 cut(s)	18
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	607
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	2 cut(s)	191, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	128
Bse21I	CCTNAGG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	191, 267
BseLI	CCNNNNNNNGG	1 cut(s)	243
BseMII	CTCAG	4 cut(s)	32, 316, 354, 414
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	172, 189
BseXI	GCAGC	5 cut(s)	245, 259, 283, 287, 511
BsiHKAI	GWGCWC	2 cut(s)	362, 534
BsiHKCI	CYCGRG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	243
BsmAI	GTCTC	4 cut(s)	107, 154, 181, 380
Bso31I	GGTCTC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	362, 534
Bsp143I	GATC	4 cut(s)	24, 61, 142, 220
Bsp1720I	GCTNAGC	1 cut(s)	324
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	3 cut(s)	184, 206, 209
BspCNI	CTCAG	4 cut(s)	31, 315, 355, 415
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	2 cut(s)	277, 529
BspPI	GGATC	1 cut(s)	215
BspTNI	GGTCTC	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	191, 267
BssMI	GATC	4 cut(s)	24, 61, 142, 220
BssT1I	CCWWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	99
BstDEI	CTNAG	5 cut(s)	18, 302, 324, 363, 423
BstDSI	CCRYGG	1 cut(s)	191
BstKTI	GATC	4 cut(s)	27, 64, 145, 223
BstMAI	GTCTC	4 cut(s)	107, 154, 181, 380
BstMBI	GATC	4 cut(s)	24, 61, 142, 220
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 281
BstPAI	GACNNNNGTC	1 cut(s)	615
BstSFI	CTRYAG	3 cut(s)	169, 273, 525
BstV1I	GCAGC	5 cut(s)	245, 259, 283, 287, 511
Bsu36I	CCTNAGG	1 cut(s)	423
BtgI	CCRYGG	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	131
CviAII	CATG	2 cut(s)	192, 508
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	5 cut(s)	18, 302, 324, 363, 423
DpnI	GATC	4 cut(s)	26, 63, 144, 222
DpnII	GATC	4 cut(s)	24, 61, 142, 220
EciI	GGCGGA	2 cut(s)	199, 224
Ecl136II	GAGCTC	2 cut(s)	360, 532
Eco130I	CCWWGG	1 cut(s)	191
Eco24I	GRGCYC	2 cut(s)	362, 534
Eco31I	GGTCTC	1 cut(s)	181
Eco53kI	GAGCTC	2 cut(s)	360, 532
Eco81I	CCTNAGG	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	237
EcoICRI	GAGCTC	2 cut(s)	360, 532
EcoT14I	CCWWGG	1 cut(s)	191
EcoT38I	GRGCYC	2 cut(s)	362, 534
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	2 cut(s)	195, 511
FaiI	YATR	9 cut(s)	171, 193, 288, 448, 468, 477, 509, 591, 597
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FatI	CATG	2 cut(s)	191, 507
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	6 cut(s)	207, 234, 273, 276, 297, 525
FriOI	GRGCYC	2 cut(s)	362, 534
Fsp4HI	GCNGC	6 cut(s)	207, 234, 273, 276, 297, 525
FspBI	CTAG	3 cut(s)	14, 102, 281
GluI	GCNGC	6 cut(s)	207, 234, 273, 276, 297, 525
Hin1II	CATG	2 cut(s)	195, 511
HindIII	AAGCTT	1 cut(s)	538
HinfI	GANTC	3 cut(s)	115, 214, 365
HphI	GGTGA	2 cut(s)	34, 82
Hpy188I	TCNGA	3 cut(s)	29, 225, 364
Hpy188III	TCNNGA	5 cut(s)	140, 218, 422, 438, 624
Hpy99I	CGWCG	2 cut(s)	499, 502
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	5 cut(s)	70, 275, 470, 527, 550
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 281
HpyF3I	CTNAG	5 cut(s)	18, 302, 324, 363, 423
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	2 cut(s)	195, 511
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	24, 61, 142, 220
LmnI	GCTCC	2 cut(s)	357, 537
LpnPI	CCDG	5 cut(s)	5, 141, 289, 354, 435
Lsp1109I	GCAGC	5 cut(s)	245, 259, 283, 287, 511
LweI	GCATC	1 cut(s)	537
MaeI	CTAG	3 cut(s)	14, 102, 281
MaeII	ACGT	1 cut(s)	494
MaeIII	GTNAC	3 cut(s)	38, 484, 617
MalI	GATC	4 cut(s)	26, 63, 144, 222
MboI	GATC	4 cut(s)	24, 61, 142, 220
MboII	GAAGA	2 cut(s)	552, 555
MhlI	GDGCHC	2 cut(s)	362, 534
MluCI	AATT	3 cut(s)	45, 151, 392
MlyI	GAGTC	2 cut(s)	109, 374
MnlI	CCTC	9 cut(s)	103, 150, 167, 174, 262, 418, 429, 514, 594
MroXI	GAANNNNTTC	1 cut(s)	79
MseI	TTAA	2 cut(s)	48, 86
MwoI	GCNNNNNNNGC	2 cut(s)	272, 281
NcoI	CCATGG	1 cut(s)	191
NdeII	GATC	4 cut(s)	24, 61, 142, 220
NlaIII	CATG	2 cut(s)	195, 511
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	2 cut(s)	228, 292
NmuCI	GTSAC	3 cut(s)	38, 484, 617
PdmI	GAANNNNTTC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	214
PkrI	GCNGC	6 cut(s)	208, 235, 274, 277, 298, 526
PleI	GAGTC	2 cut(s)	109, 373
PpsI	GAGTC	2 cut(s)	109, 373
PshAI	GACNNNNGTC	1 cut(s)	615
PshBI	ATTAAT	1 cut(s)	48
PsiI	TTATAA	1 cut(s)	591
Psp124BI	GAGCTC	2 cut(s)	362, 534
PspN4I	GGNNCC	1 cut(s)	582
PstI	CTGCAG	2 cut(s)	277, 529
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SacI	GAGCTC	2 cut(s)	362, 534
SaqAI	TTAA	2 cut(s)	48, 86
SatI	GCNGC	6 cut(s)	207, 234, 273, 276, 297, 525
Sau3AI	GATC	4 cut(s)	24, 61, 142, 220
ScaI	AGTACT	1 cut(s)	132
SchI	GAGTC	2 cut(s)	109, 374
SduI	GDGCHC	2 cut(s)	362, 534
SfaNI	GCATC	1 cut(s)	537
SfcI	CTRYAG	3 cut(s)	169, 273, 525
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
Sse9I	AATT	3 cut(s)	45, 151, 392
SsiI	CCGC	3 cut(s)	184, 206, 209
SspI	AATATT	2 cut(s)	415, 433
SspMI	CTAG	3 cut(s)	14, 102, 281
SstI	GAGCTC	2 cut(s)	362, 534
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	4 cut(s)	439, 462, 545, 572
TasI	AATT	3 cut(s)	45, 151, 392
TatI	WGTACW	1 cut(s)	130
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	48, 86
Tru9I	TTAA	2 cut(s)	48, 86
TseFI	GTSAC	3 cut(s)	38, 484, 617
TseI	GCWGC	5 cut(s)	233, 272, 275, 296, 524
Tsp45I	GTSAC	3 cut(s)	38, 484, 617
TspGWI	ACGGA	1 cut(s)	627
VspI	ATTAAT	1 cut(s)	48
XapI	RAATTY	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	79
XspI	CTAG	3 cut(s)	14, 102, 281
ZrmI	AGTACT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.