AT5G07460

sulfoxide reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011797
Physical Location & Seq
Reverse (-)
2360630 .. 2362228
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G07460.1

Sequence Viewer

Length: 657 bp
ATGGATTCTTCTCTGAAAACTCAGGAACCTCAAGTAGTGGAAACTTCTCCTTCTCCGGTAGCTCAGGAGCCTCCTCAAGTAGCTGACAAACCTGCGATTGTTCCTTCTCCGATAGCTCAAGAGCCAGACAACGATGTTCCGGCGCCGGGAAACGAGTTTGCTGAGTTCGCCGCCGGTTGTTTCTGGGGAGTGGAGCTTGCTTTCCAGAGAATCCCTGGCGTGACCGTGACTGAGGTCGGTTACACTCATGGGATCTCTCACAATCCGTCTTATGAAGATGTCTGTACGAACACCACGAACCATGCAGAAGTTGTCAGGGTTCAATATGATCCTAAAGAATGCACTTATGAGACACTTCTTGATTTGTTTTGGTCTAGACATAATCCTACCACCTTGAATCGTCAGGGAGAACTTTTGGGAGCACAATACCGATCAGGTATATATTTCTACACACCGGAGCAAGAGAAACTAGCACGCGAGTCTCTAGAGAAAGAGCAGAAAAAACTGGAGGATAAGATTGTGACTGAGATCTTACCGGCAAAGAAATTCTACAAAGCTGAAGAATACCATCAGCAGTACCTTGTCAAAGGTGGGATGCATGGAAACGCTCAATCACCTGCAAAGAGCTGCAAGGACCCTATCCGCTGCTATGGCTAA

Protein Analysis

218

Amino Acids

24.43

Weight (kDa)

5.11

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 55 - 196 5.4e-58 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca FvH4_7g26800
malus_domestica MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica Prupe.2G271200_v2.0.a1
pyrus_communis pycom01g18690 pycom07g22120
rosa_chinensis RchiOBHm_Chr1g0373491
rosa_laevigata RLG00000026822
rosa_roxburghii Rroxscaffold_4G00284210
rosa_rugosa Rorug01G0377600
rosa_samantha Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana Rw1G034840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 625
Acc36I ACCTGC 2 cut(s) 100, 625
AccB1I GGYRCC 1 cut(s) 142
AccII CGCG 1 cut(s) 477
AciI CCGC 2 cut(s) 171, 643
AclWI GGATC 2 cut(s) 260, 323
AcsI RAATTY 1 cut(s) 545
AcuI CTGAAG 1 cut(s) 579
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 2 cut(s) 286, 578
AfiI CCNNNNNNNGG 1 cut(s) 146
AgsI TTSAA 2 cut(s) 323, 397
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 6 cut(s) 62, 83, 116, 196, 557, 627
AluI AGCT 6 cut(s) 62, 83, 116, 196, 557, 627
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 2 cut(s) 344, 486
AlwI GGATC 2 cut(s) 260, 323
ApeKI GCWGC 2 cut(s) 627, 645
ApoI RAATTY 1 cut(s) 545
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 1 cut(s) 634
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 606
AvaII GGWCC 1 cut(s) 634
BanI GGYRCC 1 cut(s) 142
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 2 cut(s) 614, 632
BccI CCATC 1 cut(s) 576
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 2 cut(s) 344, 486
BfaI CTAG 3 cut(s) 375, 470, 485
BfoI RGCGCY 1 cut(s) 146
BfuAI ACCTGC 2 cut(s) 100, 625
BglII AGATCT 1 cut(s) 528
BisI GCNGC 3 cut(s) 171, 628, 646
BlsI GCNGC 3 cut(s) 172, 629, 647
Bme1390I CCNGG 2 cut(s) 147, 216
Bme18I GGWCC 1 cut(s) 634
BmgT120I GGNCC 1 cut(s) 634
BmiI GGNNCC 4 cut(s) 27, 69, 144, 636
BmrFI CCNGG 2 cut(s) 147, 216
BmsI GCATC 1 cut(s) 585
BoxI GACNNNNGTC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 527
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 3 cut(s) 15, 60, 102
BpuMI CCSGG 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 214
BsaWI WCCGGW 2 cut(s) 55, 454
Bsc4I CCNNNNNNNGG 1 cut(s) 146
Bse118I RCCGGY 2 cut(s) 173, 535
Bse1I ACTGG 1 cut(s) 510
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 600
BseLI CCNNNNNNNGG 1 cut(s) 146
BseMII CTCAG 5 cut(s) 35, 77, 153, 222, 516
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 63
BseXI GCAGC 2 cut(s) 614, 632
Bsh1236I CGCG 1 cut(s) 477
BshNI GGYRCC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 424
BsiSI CCGG 6 cut(s) 56, 140, 146, 174, 455, 536
BslI CCNNNNNNNGG 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 344, 486
BsmI GAATGC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 424
Bsp143I GATC 4 cut(s) 252, 328, 431, 528
BspACI CCGC 2 cut(s) 171, 643
BspCNI CTCAG 5 cut(s) 34, 76, 154, 223, 517
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 4 cut(s) 27, 69, 144, 636
BspMI ACCTGC 2 cut(s) 100, 625
BspPI GGATC 2 cut(s) 260, 323
BspT107I GGYRCC 1 cut(s) 142
BsrFI RCCGGY 2 cut(s) 173, 535
BsrI ACTGG 1 cut(s) 510
BssAI RCCGGY 2 cut(s) 173, 535
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 4 cut(s) 252, 328, 431, 528
BssNI GRCGYC 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 1 cut(s) 226
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 2 cut(s) 198, 475
BstDEI CTNAG 5 cut(s) 21, 63, 162, 231, 525
BstF5I GGATG 1 cut(s) 600
BstFNI CGCG 1 cut(s) 477
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 4 cut(s) 255, 331, 434, 531
BstMAI GTCTC 2 cut(s) 344, 486
BstMBI GATC 4 cut(s) 252, 328, 431, 528
BstMWI GCNNNNNNNGC 2 cut(s) 167, 651
BstNI CCWGG 1 cut(s) 216
BstPAI GACNNNNGTC 1 cut(s) 233
BstSCI CCNGG 2 cut(s) 145, 214
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 2 cut(s) 614, 632
BstX2I RGATCY 2 cut(s) 252, 528
BstYI RGATCY 2 cut(s) 252, 528
BtsCI GGATG 1 cut(s) 600
BveI ACCTGC 2 cut(s) 100, 625
Cac8I GCNNGC 2 cut(s) 198, 475
CfoI GCGC 1 cut(s) 145
Cfr10I RCCGGY 2 cut(s) 173, 535
Cfr13I GGNCC 1 cut(s) 634
Csp6I GTAC 2 cut(s) 285, 577
CviAII CATG 3 cut(s) 248, 302, 599
CviJI RGCY 9 cut(s) 62, 70, 83, 116, 124, 196, 557, 627, 654
CviKI_1 RGCY 9 cut(s) 62, 70, 83, 116, 124, 196, 557, 627, 654
CviQI GTAC 2 cut(s) 285, 577
DdeI CTNAG 5 cut(s) 21, 63, 162, 231, 525
DinI GGCGCC 1 cut(s) 144
DpnI GATC 4 cut(s) 254, 330, 433, 530
DpnII GATC 4 cut(s) 252, 328, 431, 528
Eco47I GGWCC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 579
EcoO109I RGGNCCY 1 cut(s) 634
EcoRII CCWGG 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 600
EgeI GGCGCC 1 cut(s) 144
EheI GGCGCC 1 cut(s) 144
FaeI CATG 3 cut(s) 251, 305, 602
FatI CATG 3 cut(s) 247, 301, 598
Fnu4HI GCNGC 3 cut(s) 171, 628, 646
FokI GGATG 1 cut(s) 607
Fsp4HI GCNGC 3 cut(s) 171, 628, 646
FspBI CTAG 3 cut(s) 375, 470, 485
GlaI GCGC 1 cut(s) 144
GluI GCNGC 3 cut(s) 171, 628, 646
GsuI CTGGAG 1 cut(s) 527
HaeII RGCGCY 1 cut(s) 146
HapII CCGG 6 cut(s) 56, 140, 146, 174, 455, 536
HhaI GCGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 3 cut(s) 251, 305, 602
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HinfI GANTC 4 cut(s) 5, 210, 397, 479
HpaII CCGG 6 cut(s) 56, 140, 146, 174, 455, 536
HphI GGTGA 1 cut(s) 606
Hpy188I TCNGA 2 cut(s) 15, 111
Hpy188III TCNNGA 7 cut(s) 23, 65, 119, 205, 359, 375, 485
HpyAV CCTTC 2 cut(s) 60, 114
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 5 cut(s) 305, 342, 598, 620, 630
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 651
HpyF3I CTNAG 5 cut(s) 21, 63, 162, 231, 525
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 3 cut(s) 251, 305, 602
HspAI GCGC 1 cut(s) 143
KasI GGCGCC 1 cut(s) 142
Kzo9I GATC 4 cut(s) 252, 328, 431, 528
LmnI GCTCC 4 cut(s) 67, 193, 419, 457
Lsp1109I GCAGC 2 cut(s) 614, 632
LweI GCATC 1 cut(s) 585
MaeI CTAG 3 cut(s) 375, 470, 485
MaeIII GTNAC 4 cut(s) 220, 226, 239, 520
MalI GATC 4 cut(s) 254, 330, 433, 530
MboI GATC 4 cut(s) 252, 328, 431, 528
MboII GAAGA 2 cut(s) 287, 572
MflI RGATCY 2 cut(s) 252, 528
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 1 cut(s) 545
Mly113I GGCGCC 1 cut(s) 143
MlyI GAGTC 1 cut(s) 488
MnlI CCTC 5 cut(s) 39, 81, 84, 226, 502
Mph1103I ATGCAT 1 cut(s) 600
MspA1I CMGCKG 1 cut(s) 645
MspI CCGG 6 cut(s) 56, 140, 146, 174, 455, 536
MspR9I CCNGG 2 cut(s) 147, 216
Mva1269I GAATGC 1 cut(s) 344
MvaI CCWGG 1 cut(s) 216
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 2 cut(s) 167, 651
NarI GGCGCC 1 cut(s) 143
NciI CCSGG 1 cut(s) 147
NdeII GATC 4 cut(s) 252, 328, 431, 528
NlaIII CATG 3 cut(s) 251, 305, 602
NlaIV GGNNCC 4 cut(s) 27, 69, 144, 636
NmuCI GTSAC 3 cut(s) 220, 226, 520
NsiI ATGCAT 1 cut(s) 600
PaqCI CACCTGC 1 cut(s) 625
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PctI GAATGC 1 cut(s) 344
PfeI GAWTC 3 cut(s) 5, 210, 397
PkrI GCNGC 3 cut(s) 172, 629, 647
PleI GAGTC 1 cut(s) 487
PluTI GGCGCC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 487
PpuMI RGGWCCY 1 cut(s) 634
PshAI GACNNNNGTC 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 634
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 4 cut(s) 27, 69, 144, 636
PspPI GGNCC 1 cut(s) 634
PspPPI RGGWCCY 1 cut(s) 634
PsuI RGATCY 2 cut(s) 252, 528
RsaI GTAC 2 cut(s) 286, 578
RsaNI GTAC 2 cut(s) 285, 577
SatI GCNGC 3 cut(s) 171, 628, 646
Sau3AI GATC 4 cut(s) 252, 328, 431, 528
Sau96I GGNCC 1 cut(s) 634
SchI GAGTC 1 cut(s) 488
ScrFI CCNGG 2 cut(s) 147, 216
SduI GDGCHC 1 cut(s) 424
SfaNI GCATC 1 cut(s) 585
SfoI GGCGCC 1 cut(s) 144
SinI GGWCC 1 cut(s) 634
SmlI CTYRAG 3 cut(s) 30, 75, 117
SmoI CTYRAG 3 cut(s) 30, 75, 117
Sse9I AATT 1 cut(s) 545
SsiI CCGC 2 cut(s) 171, 643
SspDI GGCGCC 1 cut(s) 142
SspMI CTAG 3 cut(s) 375, 470, 485
StyD4I CCNGG 2 cut(s) 145, 214
TaaI ACNGT 1 cut(s) 226
TasI AATT 1 cut(s) 545
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 3 cut(s) 5, 210, 397
TseFI GTSAC 3 cut(s) 220, 226, 520
TseI GCWGC 2 cut(s) 627, 645
Tsp45I GTSAC 3 cut(s) 220, 226, 520
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 634
XapI RAATTY 1 cut(s) 545
XbaI TCTAGA 2 cut(s) 374, 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XspI CTAG 3 cut(s) 375, 470, 485
Zsp2I ATGCAT 1 cut(s) 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.