Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Reverse (-)

2362524 .. 2364479

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G07470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAACATACTCAACAGATTGGGTTTGGGATCAAGTGGGCAAACCAATATGGATCCTTCTCCGATCGCTCAGGGAAATGACGATGACACACCGGCGCCGGGGAATCAGTTTGCCCAATTCGGAGCTGGATGTTTCTGGGGTGTCGAGCTGGCGTTTCAGAGAGTCCCAGGGGTGACTCAGACCGAGGCTGGATACACCCAAGGGACCGTAGACAATCCTTCATACGGAGATGTTTGTTCTGGTACCACAGGCCATTCGGAGGTTGTTAGGGTTCAATATGATCTTAACGATTGCACCTATGAGTCTCTGCTTGATTTGTTCTGGTCTAGGCATGATCCCACCACTTTGAATCGCCAGGGAAATGACGTGGGAACCCAATACAGATCTGGAATATACTTCTACACACCCGAGCAGGAGAAACTAGCCCGTGAGTCACTTGAACGTCACCAGCAACAAATGGAGAGAAAGATCATGACTGAAATCTTGCCAGCTAAGAAATTCTACAGAGCTGAAGAGCATCATCAACAGTATCTGTCAAAAGGTGGGCGGTTTGGCCAAGGGCAATCCACTGCCAAAGGCTGCAACGACCCAATCCGCTGTTACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

202

Amino Acids

22.54

Weight (kDa)

5.34

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	38 - 180	9.5e-60	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	2 cut(s)	94, 242
AccI	GTMKAC	1 cut(s)	210
AciI	CCGC	2 cut(s)	547, 595
AclWI	GGATC	4 cut(s)	37, 47, 60, 329
AcoI	YGGCCR	1 cut(s)	553
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	1 cut(s)	531
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	3 cut(s)	98, 224, 259
AgsI	TTSAA	3 cut(s)	275, 349, 440
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	166, 354
AluBI	AGCT	4 cut(s)	125, 148, 491, 509
AluI	AGCT	4 cut(s)	125, 148, 491, 509
Alw26I	GTCTC	1 cut(s)	309
AlwI	GGATC	4 cut(s)	37, 47, 60, 329
AlwNI	CAGNNNCTG	1 cut(s)	532
Ama87I	CYCGRG	1 cut(s)	407
AoxI	GGCC	2 cut(s)	250, 553
ApeKI	GCWGC	1 cut(s)	579
ApoI	RAATTY	1 cut(s)	497
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	204
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	2 cut(s)	184, 437
AvaI	CYCGRG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	52
BanI	GGYRCC	2 cut(s)	94, 242
BbvI	GCAGC	1 cut(s)	566
BciT130I	CCWGG	2 cut(s)	168, 356
BciVI	GTATCC	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	309
BfaI	CTAG	2 cut(s)	327, 422
BfmI	CTRYAG	1 cut(s)	502
BfoI	RGCGCY	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	185
BglII	AGATCT	1 cut(s)	383
BisI	GCNGC	1 cut(s)	580
BlsI	GCNGC	1 cut(s)	581
Bme1390I	CCNGG	3 cut(s)	99, 168, 356
Bme18I	GGWCC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	407
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	5 cut(s)	54, 96, 205, 244, 373
BmrFI	CCNGG	3 cut(s)	99, 168, 356
BmsI	GCATC	1 cut(s)	526
Bpu10I	CCTNAGC	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	99
BsaHI	GRCGYC	1 cut(s)	95
BsaJI	CCNNGG	7 cut(s)	98, 166, 167, 183, 199, 355, 556
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 224, 259
Bse118I	RCCGGY	1 cut(s)	91
BseBI	CCWGG	2 cut(s)	168, 356
BseDI	CCNNGG	7 cut(s)	98, 166, 167, 183, 199, 355, 556
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	3 cut(s)	98, 224, 259
BseMII	CTCAG	2 cut(s)	83, 191
BseXI	GCAGC	1 cut(s)	566
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	2 cut(s)	252, 555
BshNI	GGYRCC	2 cut(s)	94, 242
BsiEI	CGRYCG	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	2 cut(s)	92, 98
BslFI	GGGAC	2 cut(s)	149, 217
BslI	CCNNNNNNNGG	3 cut(s)	98, 224, 259
BsmAI	GTCTC	1 cut(s)	309
BsmFI	GGGAC	2 cut(s)	149, 217
BsnI	GGCC	2 cut(s)	252, 555
BsoBI	CYCGRG	1 cut(s)	407
Bsp143I	GATC	7 cut(s)	29, 52, 63, 280, 334, 383, 468
BspACI	CCGC	2 cut(s)	547, 595
BspANI	GGCC	2 cut(s)	252, 555
BspCNI	CTCAG	2 cut(s)	82, 190
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	5 cut(s)	54, 96, 205, 244, 373
BspPI	GGATC	4 cut(s)	37, 47, 60, 329
BspQI	GCTCTTC	1 cut(s)	507
BspT107I	GGYRCC	2 cut(s)	94, 242
BsrFI	RCCGGY	1 cut(s)	91
BssAI	RCCGGY	1 cut(s)	91
BssECI	CCNNGG	7 cut(s)	98, 166, 167, 183, 199, 355, 556
BssMI	GATC	7 cut(s)	29, 52, 63, 280, 334, 383, 468
BssNI	GRCGYC	1 cut(s)	95
BssT1I	CCWWGG	2 cut(s)	199, 556
Bst2UI	CCWGG	2 cut(s)	168, 356
Bst4CI	ACNGT	2 cut(s)	208, 528
Bst6I	CTCTTC	1 cut(s)	507
BstACI	GRCGYC	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	150, 489
BstDEI	CTNAG	3 cut(s)	69, 177, 492
BstF5I	GGATG	1 cut(s)	134
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	7 cut(s)	32, 55, 66, 283, 337, 386, 471
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	7 cut(s)	29, 52, 63, 280, 334, 383, 468
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	603
BstNI	CCWGG	2 cut(s)	168, 356
BstSCI	CCNGG	3 cut(s)	97, 166, 354
BstSFI	CTRYAG	1 cut(s)	502
BstV1I	GCAGC	1 cut(s)	566
BstX2I	RGATCY	2 cut(s)	52, 383
BstYI	RGATCY	2 cut(s)	52, 383
BsuI	GTATCC	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	252, 555
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	1 cut(s)	134
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	567
Cac8I	GCNNGC	2 cut(s)	150, 489
CaiI	CAGNNNCTG	1 cut(s)	532
CciI	TCATGA	1 cut(s)	471
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	2 cut(s)	332, 472
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	3 cut(s)	69, 177, 492
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	7 cut(s)	31, 54, 65, 282, 336, 385, 470
DpnII	GATC	7 cut(s)	29, 52, 63, 280, 334, 383, 468
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	2 cut(s)	199, 556
Eco47I	GGWCC	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	166, 354
EcoT14I	CCWWGG	2 cut(s)	199, 556
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
ErhI	CCWWGG	2 cut(s)	199, 556
FaeI	CATG	2 cut(s)	335, 475
FaiI	YATR	8 cut(s)	8, 50, 223, 279, 300, 333, 394, 473
FaqI	GGGAC	2 cut(s)	149, 217
FatI	CATG	2 cut(s)	331, 471
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	1 cut(s)	580
FokI	GGATG	1 cut(s)	141
Fsp4HI	GCNGC	1 cut(s)	580
FspBI	CTAG	2 cut(s)	327, 422
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	580
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	2 cut(s)	252, 555
HapII	CCGG	2 cut(s)	92, 98
HhaI	GCGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	335, 475
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	6 cut(s)	103, 162, 175, 302, 349, 431
HpaII	CCGG	2 cut(s)	92, 98
HphI	GGTGA	2 cut(s)	184, 437
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	5 cut(s)	63, 122, 159, 180, 259
Hpy188III	TCNNGA	2 cut(s)	387, 472
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	66, 228
HpyCH4III	ACNGT	2 cut(s)	208, 528
HpyCH4IV	ACGT	2 cut(s)	366, 442
HpyCH4V	TGCA	2 cut(s)	294, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	603
HpyF3I	CTNAG	3 cut(s)	69, 177, 492
HpySE526I	ACGT	2 cut(s)	366, 442
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	335, 475
HspAI	GCGC	1 cut(s)	95
KasI	GGCGCC	1 cut(s)	94
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	7 cut(s)	29, 52, 63, 280, 334, 383, 468
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	122
Lsp1109I	GCAGC	1 cut(s)	566
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	2 cut(s)	327, 422
MaeII	ACGT	2 cut(s)	366, 442
MaeIII	GTNAC	4 cut(s)	172, 432, 443, 599
MalI	GATC	7 cut(s)	31, 54, 65, 282, 336, 385, 470
MboI	GATC	7 cut(s)	29, 52, 63, 280, 334, 383, 468
MboII	GAAGA	1 cut(s)	524
MflI	RGATCY	2 cut(s)	52, 383
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	2 cut(s)	116, 497
MluNI	TGGCCA	1 cut(s)	555
Mly113I	GGCGCC	1 cut(s)	95
MlyI	GAGTC	4 cut(s)	169, 171, 311, 440
MnlI	CCTC	2 cut(s)	178, 253
Mox20I	TGGCCA	1 cut(s)	555
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	1 cut(s)	285
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	597
MspI	CCGG	2 cut(s)	92, 98
MspR9I	CCNGG	3 cut(s)	99, 168, 356
MvaI	CCWGG	2 cut(s)	168, 356
MwoI	GCNNNNNNNGC	1 cut(s)	603
NarI	GGCGCC	1 cut(s)	95
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	7 cut(s)	29, 52, 63, 280, 334, 383, 468
NlaIII	CATG	2 cut(s)	335, 475
NlaIV	GGNNCC	5 cut(s)	54, 96, 205, 244, 373
NmuCI	GTSAC	3 cut(s)	172, 432, 443
PagI	TCATGA	1 cut(s)	471
PasI	CCCWGGG	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	507
PfeI	GAWTC	2 cut(s)	103, 349
PkrI	GCNGC	1 cut(s)	581
Ple19I	CGATCG	1 cut(s)	66
PleI	GAGTC	4 cut(s)	169, 170, 310, 439
PluTI	GGCGCC	1 cut(s)	98
PpsI	GAGTC	4 cut(s)	169, 170, 310, 439
Psp6I	CCWGG	2 cut(s)	166, 354
PspGI	CCWGG	2 cut(s)	166, 354
PspN4I	GGNNCC	5 cut(s)	54, 96, 205, 244, 373
PspPI	GGNCC	1 cut(s)	204
PstNI	CAGNNNCTG	1 cut(s)	532
PsuI	RGATCY	2 cut(s)	52, 383
PvuI	CGATCG	1 cut(s)	66
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	1 cut(s)	580
Sau3AI	GATC	7 cut(s)	29, 52, 63, 280, 334, 383, 468
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	4 cut(s)	169, 171, 311, 440
ScrFI	CCNGG	3 cut(s)	99, 168, 356
SetI	ASST	9 cut(s)	127, 150, 264, 299, 369, 445, 493, 511, 544
SfaNI	GCATC	1 cut(s)	526
SfcI	CTRYAG	1 cut(s)	502
SfoI	GGCGCC	1 cut(s)	96
SgrAI	CRCCGGYG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	204
Sse9I	AATT	2 cut(s)	116, 497
SsiI	CCGC	2 cut(s)	547, 595
SspDI	GGCGCC	1 cut(s)	94
SspMI	CTAG	2 cut(s)	327, 422
StyD4I	CCNGG	3 cut(s)	97, 166, 354
StyI	CCWWGG	2 cut(s)	199, 556
TaaI	ACNGT	2 cut(s)	208, 528
TaiI	ACGT	2 cut(s)	369, 445
TaqI	TCGA	1 cut(s)	144
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	116, 497
TfiI	GAWTC	2 cut(s)	103, 349
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	1 cut(s)	574
TseFI	GTSAC	3 cut(s)	172, 432, 443
TseI	GCWGC	1 cut(s)	579
Tsp45I	GTSAC	3 cut(s)	172, 432, 443
TspDTI	ATGAA	2 cut(s)	17, 210
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	204
XapI	RAATTY	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	2 cut(s)	122, 383
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	2 cut(s)	327, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.