Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Forward (+)

24774980 .. 24776398

Gene Structure 1419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAACATACTTAACAAGCTAGGTATAGGATCAAGTAGACAAACCAACATGGATCCTTCTCCAATCGCACAAGTAATCGACGACGAAGCTCCGGCGCCGGGAAACCAGTTTACTCAATTCGGCGCCGGTTGTTTCTGGAGCGTGGAATTAGCGTACCAGAGAGTTCCAGGAGTGACTCAAACAGAGGTTGGTTATTCTCAAGGGATCACTCACGATCCTTCTTACAAAGATGTTTGTTCAGGTACCACGAATCATGCCGAGATTGTTCGTGTTCAATATGATCCAAAAGAGTGTAGTTACCAGTCGCTGCTTGATTTGTTCTGGTCTAAGCATGATCCCACCACTTTGAATCGGCAGGGAAATGATGTGGGAACCCAATACCGTTCAGGGATATATTTCTACAACCCGGAGCAAGAGAAACTAGCACGCGAGTCACTGGAGCGGCACCAGCAACAAGTTGACAGGAAGGTTGTGACAGAGATCTTACCGGCTAAGAAATTTTATAGAGCTGAGGAACATCACCAGCAATACTTGTCTAAAGGAGGGAGGTTTGGTCTTAAGCAATCAACGGAAAAAGGCTGCAACGACCCAATCCGCTGCTACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

202

Amino Acids

22.9

Weight (kDa)

6.3

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	40 - 180	8.8e-60	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	4 cut(s)	94, 122, 242, 444
AccBSI	CCGCTC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	37
AccII	CGCG	1 cut(s)	429
AciI	CCGC	2 cut(s)	442, 595
AclWI	GGATC	7 cut(s)	37, 47, 60, 209, 212, 275, 329
AcsI	RAATTY	1 cut(s)	497
AcyI	GRCGYC	2 cut(s)	95, 123
AfaI	GTAC	2 cut(s)	155, 244
AfiI	CCNNNNNNNGG	1 cut(s)	98
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	2 cut(s)	275, 349
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	3 cut(s)	19, 89, 509
AluI	AGCT	3 cut(s)	19, 89, 509
AlwI	GGATC	7 cut(s)	37, 47, 60, 209, 212, 275, 329
AlwNI	CAGNNNCTG	1 cut(s)	307
ApeKI	GCWGC	3 cut(s)	307, 579, 597
ApoI	RAATTY	1 cut(s)	497
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	97, 125
AsuC2I	CCSGG	2 cut(s)	99, 407
AsuHPI	GGTGA	1 cut(s)	512
BamHI	GGATCC	1 cut(s)	52
BanI	GGYRCC	4 cut(s)	94, 122, 242, 444
BbvCI	CCTCAGC	1 cut(s)	510
BbvI	GCAGC	3 cut(s)	294, 566, 584
BciT130I	CCWGG	1 cut(s)	168
BcnI	CCSGG	2 cut(s)	99, 407
BfaI	CTAG	2 cut(s)	20, 422
BfoI	RGCGCY	2 cut(s)	98, 126
BfrI	CTTAAG	1 cut(s)	557
BglII	AGATCT	1 cut(s)	480
BisI	GCNGC	4 cut(s)	308, 443, 580, 598
BlsI	GCNGC	4 cut(s)	309, 444, 581, 599
Bme1390I	CCNGG	3 cut(s)	99, 168, 407
BmiI	GGNNCC	6 cut(s)	54, 96, 124, 244, 373, 446
BmrFI	CCNGG	3 cut(s)	99, 168, 407
BpmI	CTGGAG	2 cut(s)	157, 458
Bpu10I	CCTNAGC	1 cut(s)	510
BpuEI	CTTGAG	1 cut(s)	183
BpuMI	CCSGG	2 cut(s)	99, 407
BsaHI	GRCGYC	2 cut(s)	95, 123
BsaXI	ACNNNNNCTCC	2 cut(s)	538, 568
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse118I	RCCGGY	2 cut(s)	125, 487
Bse1I	ACTGG	3 cut(s)	106, 301, 441
BseBI	CCWGG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	3 cut(s)	106, 301, 441
BseXI	GCAGC	3 cut(s)	294, 566, 584
Bsh1236I	CGCG	1 cut(s)	429
BshNI	GGYRCC	4 cut(s)	94, 122, 242, 444
BsiSI	CCGG	5 cut(s)	92, 98, 126, 407, 488
BslI	CCNNNNNNNGG	1 cut(s)	98
Bsp143I	GATC	7 cut(s)	29, 52, 204, 214, 280, 334, 480
BspACI	CCGC	2 cut(s)	442, 595
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	6 cut(s)	54, 96, 124, 244, 373, 446
BspPI	GGATC	7 cut(s)	37, 47, 60, 209, 212, 275, 329
BspT107I	GGYRCC	4 cut(s)	94, 122, 242, 444
BspTI	CTTAAG	1 cut(s)	557
BsrBI	CCGCTC	1 cut(s)	442
BsrFI	RCCGGY	2 cut(s)	125, 487
BsrI	ACTGG	3 cut(s)	106, 301, 441
BssAI	RCCGGY	2 cut(s)	125, 487
BssMI	GATC	7 cut(s)	29, 52, 204, 214, 280, 334, 480
BssNI	GRCGYC	2 cut(s)	95, 123
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	383
BstACI	GRCGYC	2 cut(s)	95, 123
BstAFI	CTTAAG	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	427
BstDEI	CTNAG	3 cut(s)	327, 492, 510
BstFNI	CGCG	1 cut(s)	429
BstH2I	RGCGCY	2 cut(s)	98, 126
BstHHI	GCGC	2 cut(s)	97, 125
BstKTI	GATC	7 cut(s)	32, 55, 207, 217, 283, 337, 483
BstMBI	GATC	7 cut(s)	29, 52, 204, 214, 280, 334, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	448
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	3 cut(s)	97, 166, 405
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	294, 566, 584
BstX2I	RGATCY	2 cut(s)	52, 480
BstYI	RGATCY	2 cut(s)	52, 480
BtsIMutI	CAGTG	1 cut(s)	434
Cac8I	GCNNGC	1 cut(s)	427
CaiI	CAGNNNCTG	1 cut(s)	307
CfoI	GCGC	2 cut(s)	97, 125
Cfr10I	RCCGGY	2 cut(s)	125, 487
Csp6I	GTAC	2 cut(s)	154, 243
CviAII	CATG	3 cut(s)	49, 254, 332
CviJI	RGCY	5 cut(s)	19, 89, 491, 509, 579
CviKI_1	RGCY	5 cut(s)	19, 89, 491, 509, 579
CviQI	GTAC	2 cut(s)	154, 243
DdeI	CTNAG	3 cut(s)	327, 492, 510
DinI	GGCGCC	2 cut(s)	96, 124
DpnI	GATC	7 cut(s)	31, 54, 206, 216, 282, 336, 482
DpnII	GATC	7 cut(s)	29, 52, 204, 214, 280, 334, 480
EcoRII	CCWGG	1 cut(s)	166
EgeI	GGCGCC	2 cut(s)	96, 124
EheI	GGCGCC	2 cut(s)	96, 124
FaeI	CATG	3 cut(s)	52, 257, 335
FaiI	YATR	8 cut(s)	8, 26, 50, 255, 279, 333, 394, 504
FatI	CATG	3 cut(s)	48, 253, 331
FblI	GTMKAC	1 cut(s)	37
Fnu4HI	GCNGC	4 cut(s)	308, 443, 580, 598
Fsp4HI	GCNGC	4 cut(s)	308, 443, 580, 598
FspBI	CTAG	2 cut(s)	20, 422
GlaI	GCGC	2 cut(s)	96, 124
GluI	GCNGC	4 cut(s)	308, 443, 580, 598
GsuI	CTGGAG	2 cut(s)	157, 458
HaeII	RGCGCY	2 cut(s)	98, 126
HapII	CCGG	5 cut(s)	92, 98, 126, 407, 488
HhaI	GCGC	2 cut(s)	97, 125
Hin1I	GRCGYC	2 cut(s)	95, 123
Hin1II	CATG	3 cut(s)	52, 257, 335
Hin6I	GCGC	2 cut(s)	95, 123
HinP1I	GCGC	2 cut(s)	95, 123
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	4 cut(s)	175, 250, 349, 431
HpaII	CCGG	5 cut(s)	92, 98, 126, 407, 488
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	3 cut(s)	38, 111, 460
Hpy188III	TCNNGA	2 cut(s)	136, 212
Hpy8I	GTNNAC	3 cut(s)	38, 111, 460
Hpy99I	CGWCG	2 cut(s)	83, 86
HpyAV	CCTTC	3 cut(s)	66, 228, 460
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4V	TGCA	1 cut(s)	582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	448
HpyF3I	CTNAG	3 cut(s)	327, 492, 510
Hsp92I	GRCGYC	2 cut(s)	95, 123
Hsp92II	CATG	3 cut(s)	52, 257, 335
HspAI	GCGC	2 cut(s)	95, 123
KasI	GGCGCC	2 cut(s)	94, 122
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	7 cut(s)	29, 52, 204, 214, 280, 334, 480
LmnI	GCTCC	4 cut(s)	94, 138, 409, 439
Lsp1109I	GCAGC	3 cut(s)	294, 566, 584
MaeI	CTAG	2 cut(s)	20, 422
MaeIII	GTNAC	4 cut(s)	172, 296, 432, 472
MalI	GATC	7 cut(s)	31, 54, 206, 216, 282, 336, 482
MbiI	CCGCTC	1 cut(s)	442
MboI	GATC	7 cut(s)	29, 52, 204, 214, 280, 334, 480
MflI	RGATCY	2 cut(s)	52, 480
MluCI	AATT	3 cut(s)	116, 146, 497
Mly113I	GGCGCC	2 cut(s)	95, 123
MlyI	GAGTC	2 cut(s)	169, 440
MnlI	CCTC	4 cut(s)	178, 505, 536, 540
MseI	TTAA	2 cut(s)	12, 558
MspA1I	CMGCKG	1 cut(s)	597
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	5 cut(s)	92, 98, 126, 407, 488
MspR9I	CCNGG	3 cut(s)	99, 168, 407
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	1 cut(s)	448
NarI	GGCGCC	2 cut(s)	95, 123
NciI	CCSGG	2 cut(s)	99, 407
NdeII	GATC	7 cut(s)	29, 52, 204, 214, 280, 334, 480
NlaIII	CATG	3 cut(s)	52, 257, 335
NlaIV	GGNNCC	6 cut(s)	54, 96, 124, 244, 373, 446
NmeAIII	GCCGAG	1 cut(s)	283
NmuCI	GTSAC	3 cut(s)	172, 432, 472
PfeI	GAWTC	2 cut(s)	250, 349
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	4 cut(s)	309, 444, 581, 599
PleI	GAGTC	2 cut(s)	169, 439
PluTI	GGCGCC	2 cut(s)	98, 126
PpsI	GAGTC	2 cut(s)	169, 439
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	6 cut(s)	54, 96, 124, 244, 373, 446
PstNI	CAGNNNCTG	1 cut(s)	307
PsuI	RGATCY	2 cut(s)	52, 480
RsaI	GTAC	2 cut(s)	155, 244
RsaNI	GTAC	2 cut(s)	154, 243
SaqAI	TTAA	2 cut(s)	12, 558
SatI	GCNGC	4 cut(s)	308, 443, 580, 598
Sau3AI	GATC	7 cut(s)	29, 52, 204, 214, 280, 334, 480
SchI	GAGTC	2 cut(s)	169, 440
ScrFI	CCNGG	3 cut(s)	99, 168, 407
SetI	ASST	8 cut(s)	21, 25, 91, 189, 244, 471, 511, 551
SfoI	GGCGCC	2 cut(s)	96, 124
SmlI	CTYRAG	2 cut(s)	198, 557
SmoI	CTYRAG	2 cut(s)	198, 557
Sse9I	AATT	3 cut(s)	116, 146, 497
SsiI	CCGC	2 cut(s)	442, 595
SspDI	GGCGCC	2 cut(s)	94, 122
SspMI	CTAG	2 cut(s)	20, 422
StyD4I	CCNGG	3 cut(s)	97, 166, 405
TaaI	ACNGT	1 cut(s)	383
TaqI	TCGA	1 cut(s)	78
TasI	AATT	3 cut(s)	116, 146, 497
TauI	GCSGC	1 cut(s)	445
TfiI	GAWTC	2 cut(s)	250, 349
Tru1I	TTAA	2 cut(s)	12, 558
Tru9I	TTAA	2 cut(s)	12, 558
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	3 cut(s)	172, 432, 472
TseI	GCWGC	3 cut(s)	307, 579, 597
Tsp45I	GTSAC	3 cut(s)	172, 432, 472
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	584
TspRI	CASTG	1 cut(s)	441
Vha464I	CTTAAG	1 cut(s)	557
XapI	RAATTY	1 cut(s)	497
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	2 cut(s)	20, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.