Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Reverse (-)

31656616 .. 31659574

Gene Structure 2959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1247100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAACATCCTCAACAAGCTCGGCTTTGGCCCCAAGACCGCTGACCCCAACTCCGAATCCTCCTCCATTGCCCAGGGCCCCGACGATGACGTTCCGGCGCCGGGTCAGCAGTTCGCCCAGTTTGGAGCCGGGTGCTTCTGGGGTGTCGAGCTGGCGTTTCAGCGAGTACCCGGCGTGACGAAGACGGAGGTTGGGTACACCCAGGGGTTTCTGCACAACCCGAGTTACGAGGACGTGTGTACCGGCACCACCCAGCACTCGGAGGTTGTGAGAGTGCAGTACGACCCTAAAGAGTGCAACTTTGAGAGCCTGCTCGATCTTTTCTGGTCCAGGCACGACCCCACCACGCTCAATCGCCAGGGGGGTGATGTTGGGACACAATACAGATCTGGAATATACTTCTATACACCTGAGCAAGAGAAGGAAGCACGTGAATCTCTGGAACAACACCAGAAGAAAGTGAACCGAAAGATTGTCACAGAGATCCTTCCTGCCAAGAAGTTCTACCGAGCGGAGGAGTACCACCAGCAATACCTTGCAAAAGGGGGACGTTTTGGTTTTAGGCAATCTACTGAGAAAGGATGCAATGATCCAATCCGATGCTATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

204

Amino Acids

22.96

Weight (kDa)

5.98

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	39 - 181	4.9e-61	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	97, 245
AccBSI	CCGCTC	1 cut(s)	512
AciI	CCGC	2 cut(s)	39, 512
AclWI	GGATC	2 cut(s)	478, 584
AcvI	CACGTG	1 cut(s)	431
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	5 cut(s)	168, 197, 241, 281, 521
AfiI	CCNNNNNNNGG	3 cut(s)	101, 259, 514
AflIII	ACRYGT	1 cut(s)	234
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	4 cut(s)	72, 201, 329, 357
AluBI	AGCT	2 cut(s)	19, 151
AluI	AGCT	2 cut(s)	19, 151
AlwI	GGATC	2 cut(s)	478, 584
Ama87I	CYCGRG	1 cut(s)	220
AoxI	GGCC	2 cut(s)	28, 76
ApaI	GGGCCC	1 cut(s)	80
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	4 cut(s)	29, 76, 77, 327
AsuC2I	CCSGG	3 cut(s)	102, 130, 171
AsuHPI	GGTGA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	220
AvaII	GGWCC	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	80
BaeI	ACNNNNGTAYC	2 cut(s)	223, 256
BanI	GGYRCC	2 cut(s)	97, 245
BanII	GRGCYC	1 cut(s)	80
BbrPI	CACGTG	1 cut(s)	431
BbsI	GAAGAC	1 cut(s)	188
BciT130I	CCWGG	4 cut(s)	74, 203, 331, 359
BcnI	CCSGG	3 cut(s)	102, 130, 171
BfoI	RGCGCY	1 cut(s)	101
BglII	AGATCT	1 cut(s)	386
Bme1390I	CCNGG	7 cut(s)	74, 102, 130, 171, 203, 331, 359
Bme18I	GGWCC	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	220
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	4 cut(s)	29, 76, 77, 327
BmiI	GGNNCC	6 cut(s)	31, 78, 79, 99, 127, 247
BmrFI	CCNGG	7 cut(s)	74, 102, 130, 171, 203, 331, 359
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	572, 590
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	3 cut(s)	102, 130, 171
BsaAI	YACGTR	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	5 cut(s)	72, 73, 201, 202, 358
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 179, 209
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 259, 514
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	118
Bse3DI	GCAATG	2 cut(s)	66, 592
BseBI	CCWGG	4 cut(s)	74, 203, 331, 359
BseDI	CCNNGG	5 cut(s)	72, 73, 201, 202, 358
BseGI	GGATG	2 cut(s)	6, 587
BseLI	CCNNNNNNNGG	3 cut(s)	101, 259, 514
BseMI	GCAATG	2 cut(s)	66, 592
BseMII	CTCAG	2 cut(s)	402, 564
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	52, 530
BseSI	GKGCMC	1 cut(s)	80
BseYI	CCCAGC	1 cut(s)	252
BsgI	GTGCAG	2 cut(s)	197, 296
BshFI	GGCC	2 cut(s)	30, 78
BshNI	GGYRCC	2 cut(s)	97, 245
BsiHKCI	CYCGRG	1 cut(s)	220
BsiSI	CCGG	5 cut(s)	95, 101, 129, 171, 243
BslFI	GGGAC	2 cut(s)	388, 561
BslI	CCNNNNNNNGG	3 cut(s)	101, 259, 514
BsmFI	GGGAC	2 cut(s)	388, 561
BsnI	GGCC	2 cut(s)	30, 78
BsoBI	CYCGRG	1 cut(s)	220
Bsp120I	GGGCCC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	4 cut(s)	316, 386, 483, 589
BspACI	CCGC	2 cut(s)	39, 512
BspANI	GGCC	2 cut(s)	30, 78
BspCNI	CTCAG	2 cut(s)	403, 565
BspLI	GGNNCC	6 cut(s)	31, 78, 79, 99, 127, 247
BspPI	GGATC	2 cut(s)	478, 584
BspT107I	GGYRCC	2 cut(s)	97, 245
BsrBI	CCGCTC	1 cut(s)	512
BsrDI	GCAATG	2 cut(s)	66, 592
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	5 cut(s)	72, 73, 201, 202, 358
BssMI	GATC	4 cut(s)	316, 386, 483, 589
BssNI	GRCGYC	1 cut(s)	98
Bst2UI	CCWGG	4 cut(s)	74, 203, 331, 359
BstACI	GRCGYC	1 cut(s)	98
BstBAI	YACGTR	1 cut(s)	431
BstC8I	GCNNGC	2 cut(s)	153, 311
BstDEI	CTNAG	2 cut(s)	411, 573
BstF5I	GGATG	2 cut(s)	6, 587
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	4 cut(s)	319, 389, 486, 592
BstMBI	GATC	4 cut(s)	316, 386, 483, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	4 cut(s)	74, 203, 331, 359
BstSCI	CCNGG	7 cut(s)	72, 100, 128, 169, 201, 329, 357
BstSLI	GKGCMC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	2 cut(s)	386, 483
BstYI	RGATCY	2 cut(s)	386, 483
BsuRI	GGCC	2 cut(s)	30, 78
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	6, 587
Cac8I	GCNNGC	2 cut(s)	153, 311
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	4 cut(s)	29, 76, 77, 327
Csp6I	GTAC	5 cut(s)	167, 196, 240, 280, 520
CviJI	RGCY	8 cut(s)	19, 24, 30, 78, 128, 151, 309, 609
CviKI_1	RGCY	8 cut(s)	19, 24, 30, 78, 128, 151, 309, 609
CviQI	GTAC	5 cut(s)	167, 196, 240, 280, 520
DdeI	CTNAG	2 cut(s)	411, 573
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	4 cut(s)	318, 388, 485, 591
DpnII	GATC	4 cut(s)	316, 386, 483, 589
Eco24I	GRGCYC	1 cut(s)	80
Eco47I	GGWCC	1 cut(s)	327
Eco72I	CACGTG	1 cut(s)	431
Eco88I	CYCGRG	1 cut(s)	220
EcoO109I	RGGNCCY	2 cut(s)	76, 77
EcoRII	CCWGG	4 cut(s)	72, 201, 329, 357
EcoT38I	GRGCYC	1 cut(s)	80
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
FaiI	YATR	3 cut(s)	397, 405, 606
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	2 cut(s)	388, 561
FokI	GGATG	1 cut(s)	594
FriOI	GRGCYC	1 cut(s)	80
GlaI	GCGC	1 cut(s)	99
GsaI	CCCAGC	1 cut(s)	256
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	30, 78
HapII	CCGG	5 cut(s)	95, 101, 129, 171, 243
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	98
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HinfI	GANTC	2 cut(s)	56, 434
HpaII	CCGG	5 cut(s)	95, 101, 129, 171, 243
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	3 cut(s)	198, 240, 463
Hpy188I	TCNGA	3 cut(s)	55, 262, 599
Hpy188III	TCNNGA	2 cut(s)	390, 440
Hpy8I	GTNNAC	3 cut(s)	198, 240, 463
Hpy99I	CGWCG	1 cut(s)	86
HpyAV	CCTTC	2 cut(s)	415, 497
HpyCH4IV	ACGT	4 cut(s)	90, 234, 430, 550
HpyCH4V	TGCA	5 cut(s)	214, 277, 297, 539, 585
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	411, 573
HpySE526I	ACGT	4 cut(s)	90, 234, 430, 550
Hsp92I	GRCGYC	1 cut(s)	98
HspAI	GCGC	1 cut(s)	98
KasI	GGCGCC	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	316, 386, 483, 589
LmnI	GCTCC	1 cut(s)	125
LweI	GCATC	2 cut(s)	572, 590
MaeII	ACGT	4 cut(s)	90, 234, 430, 550
MaeIII	GTNAC	3 cut(s)	175, 224, 475
MalI	GATC	4 cut(s)	318, 388, 485, 591
MbiI	CCGCTC	1 cut(s)	512
MboI	GATC	4 cut(s)	316, 386, 483, 589
MboII	GAAGA	2 cut(s)	193, 466
MflI	RGATCY	2 cut(s)	386, 483
MhlI	GDGCHC	1 cut(s)	80
Mly113I	GGCGCC	1 cut(s)	98
MnlI	CCTC	7 cut(s)	20, 70, 73, 181, 223, 256, 508
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	5 cut(s)	95, 101, 129, 171, 243
MspR9I	CCNGG	7 cut(s)	74, 102, 130, 171, 203, 331, 359
MvaI	CCWGG	4 cut(s)	74, 203, 331, 359
MwoI	GCNNNNNNNGC	1 cut(s)	106
NarI	GGCGCC	1 cut(s)	98
NciI	CCSGG	3 cut(s)	102, 130, 171
NdeII	GATC	4 cut(s)	316, 386, 483, 589
NlaIV	GGNNCC	6 cut(s)	31, 78, 79, 99, 127, 247
NmuCI	GTSAC	2 cut(s)	175, 475
PasI	CCCWGGG	2 cut(s)	73, 202
PfeI	GAWTC	2 cut(s)	56, 434
PluTI	GGCGCC	1 cut(s)	101
PmaCI	CACGTG	1 cut(s)	431
PmlI	CACGTG	1 cut(s)	431
Ppu21I	YACGTR	1 cut(s)	431
Psp6I	CCWGG	4 cut(s)	72, 201, 329, 357
PspCI	CACGTG	1 cut(s)	431
PspFI	CCCAGC	1 cut(s)	252
PspGI	CCWGG	4 cut(s)	72, 201, 329, 357
PspN4I	GGNNCC	6 cut(s)	31, 78, 79, 99, 127, 247
PspOMI	GGGCCC	1 cut(s)	76
PspPI	GGNCC	4 cut(s)	29, 76, 77, 327
PsuI	RGATCY	2 cut(s)	386, 483
RsaI	GTAC	5 cut(s)	168, 197, 241, 281, 521
RsaNI	GTAC	5 cut(s)	167, 196, 240, 280, 520
Sau3AI	GATC	4 cut(s)	316, 386, 483, 589
Sau96I	GGNCC	4 cut(s)	29, 76, 77, 327
ScrFI	CCNGG	7 cut(s)	74, 102, 130, 171, 203, 331, 359
SduI	GDGCHC	1 cut(s)	80
SfaNI	GCATC	2 cut(s)	572, 590
SfoI	GGCGCC	1 cut(s)	99
SinI	GGWCC	1 cut(s)	327
SsiI	CCGC	2 cut(s)	39, 512
SspDI	GGCGCC	1 cut(s)	97
StyD4I	CCNGG	7 cut(s)	72, 100, 128, 169, 201, 329, 357
TaiI	ACGT	4 cut(s)	93, 237, 433, 553
TaqI	TCGA	2 cut(s)	147, 315
TfiI	GAWTC	2 cut(s)	56, 434
TseFI	GTSAC	2 cut(s)	175, 475
Tsp45I	GTSAC	2 cut(s)	175, 475
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.