Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Reverse (-)

27508118 .. 27510148

Gene Structure 2031 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G271200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGCTCAAAACCTTAGCCACCATCTCCACCACTTCACCACTCATCTCCACCGCCATAACCACCCCTAAACTCTCTCTCTCTAAGCCCTTCCTTTCTCTCTCTAAACTCCAAAACAAACTCACCTCCCCCTTCCCACAAACCCACAGACCCATCTCTTTCAACAAGCCCCAAATGAACCTCCTCAACAAGCTCGGCTTCGGCCCAAAGACCTCCGACCCCACCTCCGATTCTTCCTCCATCCCTCTGGGCCCAGACGACGACGTTCCGGCGCCAGGTCAGCAGTTCGCCCAGTTTGGAGCCGGGTGCTTCTGGGGTGTCGAGTTGGCCTTTCAGCGAATACCTGGCGTGACCAAGACAGAGGTTGGGTACACCCAAGGGTTCTTGCACAACCCGACTTACGAGGACGTGTGTACGGGCACCACCAACCACTCTGAGGTCGTGAGAGTGCAATACGATCCTAAAGAGTGTAACTTTGAGACTCTGCTTGATCTCTTCTGGTCCAGGCATGACCCCACCACGCTCAATCGCCAGGGGAATGATGTGGGAACACAGTACAGATCTGGAATATACTTCTATACACCTGAGCAAGAGAAGGTAGCACAAGAATCCTTGGAACAACACCAGAAGAAAATGAACCGAAAGATTGTTACAGAAATTCTTCCGGCCAAGAAGTTCTACCGAGCAGAGGAGTATCATCAGCAGTACCTTGCTAAAGGGGGCCGTTTTGGTTTTAAGCAATCTACTGAGAAAGGATGCAATGATCCAATCCGATGCTATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

261

Amino Acids

29.22

Weight (kDa)

8.7

Isoelectric Point (pI)

41.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	268, 416
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	2 cut(s)	449, 755
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	654
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	4 cut(s)	368, 412, 554, 704
AfiI	CCNNNNNNNGG	3 cut(s)	272, 433, 685
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	1 cut(s)	160
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	4 cut(s)	271, 340, 500, 528
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	470
AlwI	GGATC	2 cut(s)	449, 755
AoxI	GGCC	5 cut(s)	199, 247, 324, 663, 718
ApaI	GGGCCC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	654
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	5 cut(s)	200, 247, 248, 498, 718
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	27, 112
AvaII	GGWCC	1 cut(s)	498
BaeGI	GKGCMC	2 cut(s)	251, 419
BanI	GGYRCC	2 cut(s)	268, 416
BanII	GRGCYC	1 cut(s)	251
BccI	CCATC	3 cut(s)	29, 158, 245
BceAI	ACGGC	1 cut(s)	705
BciT130I	CCWGG	4 cut(s)	273, 342, 502, 530
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	470
BfoI	RGCGCY	1 cut(s)	272
BglII	AGATCT	1 cut(s)	557
Bme1390I	CCNGG	5 cut(s)	273, 301, 342, 502, 530
Bme18I	GGWCC	1 cut(s)	498
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	5 cut(s)	200, 247, 248, 498, 718
BmiI	GGNNCC	5 cut(s)	249, 270, 298, 418, 719
BmrFI	CCNGG	5 cut(s)	273, 301, 342, 502, 530
BmrI	ACTGGG	1 cut(s)	283
BmsI	GCATC	2 cut(s)	743, 761
BmuI	ACTGGG	1 cut(s)	283
Bpu10I	CCTNAGC	2 cut(s)	13, 582
BpuMI	CCSGG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	373, 529, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 433, 685
Bse1I	ACTGG	1 cut(s)	289
Bse3DI	GCAATG	1 cut(s)	763
BseBI	CCWGG	4 cut(s)	273, 342, 502, 530
BseDI	CCNNGG	3 cut(s)	373, 529, 609
BseGI	GGATG	2 cut(s)	237, 758
BseLI	CCNNNNNNNGG	3 cut(s)	272, 433, 685
BseMI	GCAATG	1 cut(s)	763
BseMII	CTCAG	3 cut(s)	423, 573, 735
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	2 cut(s)	170, 701
BseSI	GKGCMC	2 cut(s)	251, 419
BshFI	GGCC	5 cut(s)	201, 249, 326, 665, 720
BshNI	GGYRCC	2 cut(s)	268, 416
BsiSI	CCGG	3 cut(s)	266, 300, 662
BslI	CCNNNNNNNGG	3 cut(s)	272, 433, 685
BsmAI	GTCTC	1 cut(s)	470
BsnI	GGCC	5 cut(s)	201, 249, 326, 665, 720
Bsp120I	GGGCCC	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	251, 419
Bsp143I	GATC	4 cut(s)	454, 487, 557, 760
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	5 cut(s)	201, 249, 326, 665, 720
BspCNI	CTCAG	3 cut(s)	424, 574, 736
BspLI	GGNNCC	5 cut(s)	249, 270, 298, 418, 719
BspPI	GGATC	2 cut(s)	449, 755
BspT107I	GGYRCC	2 cut(s)	268, 416
BsrDI	GCAATG	1 cut(s)	763
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	3 cut(s)	373, 529, 609
BssMI	GATC	4 cut(s)	454, 487, 557, 760
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	2 cut(s)	373, 609
Bst2UI	CCWGG	4 cut(s)	273, 342, 502, 530
Bst4CI	ACNGT	1 cut(s)	552
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	269
BstDEI	CTNAG	5 cut(s)	13, 81, 432, 582, 744
BstF5I	GGATG	2 cut(s)	237, 758
BstH2I	RGCGCY	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	4 cut(s)	457, 490, 560, 763
BstMAI	GTCTC	1 cut(s)	470
BstMBI	GATC	4 cut(s)	454, 487, 557, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	4 cut(s)	273, 342, 502, 530
BstSCI	CCNGG	5 cut(s)	271, 299, 340, 500, 528
BstSLI	GKGCMC	2 cut(s)	251, 419
BstX2I	RGATCY	1 cut(s)	557
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	5 cut(s)	201, 249, 326, 665, 720
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	237, 758
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	5 cut(s)	200, 247, 248, 498, 718
Csp6I	GTAC	4 cut(s)	367, 411, 553, 703
CviAII	CATG	1 cut(s)	506
CviQI	GTAC	4 cut(s)	367, 411, 553, 703
DdeI	CTNAG	5 cut(s)	13, 81, 432, 582, 744
DinI	GGCGCC	1 cut(s)	270
DpnI	GATC	4 cut(s)	456, 489, 559, 762
DpnII	GATC	4 cut(s)	454, 487, 557, 760
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Eco130I	CCWWGG	2 cut(s)	373, 609
Eco24I	GRGCYC	1 cut(s)	251
Eco47I	GGWCC	1 cut(s)	498
EcoRII	CCWGG	4 cut(s)	271, 340, 500, 528
EcoT14I	CCWWGG	2 cut(s)	373, 609
EcoT38I	GRGCYC	1 cut(s)	251
EgeI	GGCGCC	1 cut(s)	270
EheI	GGCGCC	1 cut(s)	270
ErhI	CCWWGG	2 cut(s)	373, 609
FaeI	CATG	1 cut(s)	509
FaiI	YATR	5 cut(s)	56, 507, 568, 576, 777
FalI	AAGNNNNNCTT	2 cut(s)	179, 211
FatI	CATG	1 cut(s)	505
FokI	GGATG	2 cut(s)	224, 765
FriOI	GRGCYC	1 cut(s)	251
GlaI	GCGC	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	272
HaeIII	GGCC	5 cut(s)	201, 249, 326, 665, 720
HapII	CCGG	3 cut(s)	266, 300, 662
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	1 cut(s)	509
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	3 cut(s)	227, 478, 605
HpaII	CCGG	3 cut(s)	266, 300, 662
HphI	GGTGA	2 cut(s)	27, 112
Hpy166II	GTNNAC	2 cut(s)	369, 411
Hpy188I	TCNGA	4 cut(s)	214, 226, 433, 770
Hpy188III	TCNNGA	2 cut(s)	439, 561
Hpy8I	GTNNAC	2 cut(s)	369, 411
Hpy99I	CGWCG	2 cut(s)	260, 263
HpyAV	CCTTC	3 cut(s)	97, 139, 586
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4IV	ACGT	2 cut(s)	261, 405
HpyCH4V	TGCA	3 cut(s)	385, 448, 756
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	5 cut(s)	13, 81, 432, 582, 744
HpySE526I	ACGT	2 cut(s)	261, 405
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	509
HspAI	GCGC	1 cut(s)	269
KasI	GGCGCC	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	454, 487, 557, 760
LmnI	GCTCC	1 cut(s)	296
LweI	GCATC	2 cut(s)	743, 761
MaeII	ACGT	2 cut(s)	261, 405
MaeIII	GTNAC	3 cut(s)	346, 467, 646
MalI	GATC	4 cut(s)	456, 489, 559, 762
MboI	GATC	4 cut(s)	454, 487, 557, 760
MboII	GAAGA	4 cut(s)	222, 484, 637, 650
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	2 cut(s)	251, 419
MluCI	AATT	1 cut(s)	654
Mly113I	GGCGCC	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	1 cut(s)	732
MspI	CCGG	3 cut(s)	266, 300, 662
MspR9I	CCNGG	5 cut(s)	273, 301, 342, 502, 530
MvaI	CCWGG	4 cut(s)	273, 342, 502, 530
MwoI	GCNNNNNNNGC	1 cut(s)	277
NarI	GGCGCC	1 cut(s)	269
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	4 cut(s)	454, 487, 557, 760
NlaIII	CATG	1 cut(s)	509
NlaIV	GGNNCC	5 cut(s)	249, 270, 298, 418, 719
NmeAIII	GCCGAG	1 cut(s)	171
NmuCI	GTSAC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	227, 605
PleI	GAGTC	1 cut(s)	472
PluTI	GGCGCC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	472
Psp6I	CCWGG	4 cut(s)	271, 340, 500, 528
PspGI	CCWGG	4 cut(s)	271, 340, 500, 528
PspN4I	GGNNCC	5 cut(s)	249, 270, 298, 418, 719
PspOMI	GGGCCC	1 cut(s)	247
PspPI	GGNCC	5 cut(s)	200, 247, 248, 498, 718
PsuI	RGATCY	1 cut(s)	557
RsaI	GTAC	4 cut(s)	368, 412, 554, 704
RsaNI	GTAC	4 cut(s)	367, 411, 553, 703
SaqAI	TTAA	1 cut(s)	732
Sau3AI	GATC	4 cut(s)	454, 487, 557, 760
Sau96I	GGNCC	5 cut(s)	200, 247, 248, 498, 718
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	5 cut(s)	273, 301, 342, 502, 530
SduI	GDGCHC	2 cut(s)	251, 419
SfaNI	GCATC	2 cut(s)	743, 761
SfoI	GGCGCC	1 cut(s)	270
SinI	GGWCC	1 cut(s)	498
Sse9I	AATT	1 cut(s)	654
SsiI	CCGC	1 cut(s)	51
SspDI	GGCGCC	1 cut(s)	268
StyD4I	CCNGG	5 cut(s)	271, 299, 340, 500, 528
StyI	CCWWGG	2 cut(s)	373, 609
TaaI	ACNGT	1 cut(s)	552
TaiI	ACGT	2 cut(s)	264, 408
TaqI	TCGA	1 cut(s)	318
TasI	AATT	1 cut(s)	654
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	2 cut(s)	227, 605
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TseFI	GTSAC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	188, 647
VpaK11BI	GGWCC	1 cut(s)	498
XapI	RAATTY	1 cut(s)	654
XmnI	GAANNNNTTC	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.