Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Reverse (-)

27703086 .. 27706053

Gene Structure 2968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1176300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCTCAAAAGCTTAGCCGCCATCTCCACCACCTCACCACTCATCTCCACCGCCACCACGGCAACAGCCCCCAAATTCTCTCTCTGTAACCCCTTTCTTTCTCTCTCTAAGCTCCGACCCAAACCCGCCTCCAATTTCCCGCAAACCCACCGGACCATCTCCTTCCGCACCCCCCAAATGAACATCCTCAACAAGCTCGGGTTCGGCCCCAAGACCGCCGACCCCAACTCCGAATCCTCCGCCATCGCCCAGGGTCCCGACGATGACGTTCCGGCTCCGGGTCAGCAGTTCGCGCAGTTCGGAGCTGGGTGCTTCTGGGGTGTCGAGCTGGCGTTTCAGCGAGTGCCCGGCGTGACGAAGACGGAGGTTGGGTACAGCCAGGGGTTTCTGCACAACCCAAGTTACGAGGACGTGTGTTCCGGCACCACCCAGCACTCGGAGGTCGTGAGAGTGCAGTACGACCCTAAAGAGTGCAACTTTGAGAGCCTGCTCGATCTTTTCTGGTCCAGGCACGACCCAACCACGCTCAATCGCCAGGGGGGTGATGTCGGGACACAATACAGATCCGGAATATACTTCTACACACCTGAGCAAGAGAAGGCAGCACGAGAATCTCTGGAACAACACCAGAAGAAAGTGAACCGAAAGATTGTCACAGAGATCCTTCCTGCCAAGAAGTTCTACCGAGCGGAGGAGTACCATCAGCAGTACCTTGCAAAAGGGGGACGTTTTGGTTTTAGTCAATCTGCTGAGAAAGGATGCAATGATCCCATCCGATGCTACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

263

Amino Acids

29.12

Weight (kDa)

8.66

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	98 - 240	1.1e-60	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	422
AccBSI	CCGCTC	1 cut(s)	689
AccII	CGCG	1 cut(s)	293
AccIII	TCCGGA	1 cut(s)	566
AciI	CCGC	8 cut(s)	18, 51, 126, 140, 166, 216, 240, 689
AclWI	GGATC	3 cut(s)	558, 655, 761
AcsI	RAATTY	1 cut(s)	74
AfaI	GTAC	4 cut(s)	374, 458, 698, 710
AfiI	CCNNNNNNNGG	3 cut(s)	278, 436, 691
AflIII	ACRYGT	1 cut(s)	411
AjiI	CACGTC	1 cut(s)	412
AjnI	CCWGG	4 cut(s)	249, 378, 506, 534
AluBI	AGCT	5 cut(s)	12, 112, 196, 305, 328
AluI	AGCT	5 cut(s)	12, 112, 196, 305, 328
AlwI	GGATC	3 cut(s)	558, 655, 761
Ama87I	CYCGRG	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	566
AoxI	GGCC	1 cut(s)	205
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	295
AspS9I	GGNCC	4 cut(s)	153, 206, 254, 504
AsuC2I	CCSGG	2 cut(s)	279, 348
AsuHPI	GGTGA	2 cut(s)	27, 554
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	3 cut(s)	153, 254, 504
BaeGI	GKGCMC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	422
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	365
BbvI	GCAGC	1 cut(s)	614
BccI	CCATC	5 cut(s)	29, 164, 251, 708, 779
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	4 cut(s)	251, 380, 508, 536
BcnI	CCSGG	2 cut(s)	279, 348
BglI	GCCNNNNNGGC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	18, 603
BlpI	GCTNAGC	1 cut(s)	13
BlsI	GCNGC	2 cut(s)	19, 604
Bme1390I	CCNGG	6 cut(s)	251, 279, 348, 380, 508, 536
Bme18I	GGWCC	3 cut(s)	153, 254, 504
BmeT110I	CYCGRG	1 cut(s)	197
BmgBI	CACGTC	1 cut(s)	412
BmgT120I	GGNCC	4 cut(s)	153, 206, 254, 504
BmiI	GGNNCC	5 cut(s)	208, 255, 256, 276, 424
BmrFI	CCNGG	6 cut(s)	251, 279, 348, 380, 508, 536
BmsI	GCATC	2 cut(s)	749, 767
BpiI	GAAGAC	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu1102I	GCTNAGC	1 cut(s)	13
BpuMI	CCSGG	2 cut(s)	279, 348
BsaJI	CCNNGG	5 cut(s)	57, 249, 250, 379, 535
BsaWI	WCCGGW	2 cut(s)	150, 566
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 356, 386
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 436, 691
Bse3DI	GCAATG	1 cut(s)	769
BseAI	TCCGGA	1 cut(s)	566
BseBI	CCWGG	4 cut(s)	251, 380, 508, 536
BseDI	CCNNGG	5 cut(s)	57, 249, 250, 379, 535
BseGI	GGATG	3 cut(s)	183, 764, 771
BseLI	CCNNNNNNNGG	3 cut(s)	278, 436, 691
BseMI	GCAATG	1 cut(s)	769
BseMII	CTCAG	2 cut(s)	579, 741
BseRI	GAGGAG	1 cut(s)	707
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	614
BseYI	CCCAGC	2 cut(s)	305, 429
BsgI	GTGCAG	2 cut(s)	374, 473
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	207
BshNI	GGYRCC	1 cut(s)	422
BsiHKCI	CYCGRG	1 cut(s)	197
BsiSI	CCGG	6 cut(s)	151, 272, 278, 348, 420, 567
BslFI	GGGAC	3 cut(s)	240, 565, 738
BslI	CCNNNNNNNGG	3 cut(s)	278, 436, 691
BsmFI	GGGAC	3 cut(s)	240, 565, 738
BsnI	GGCC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp13I	TCCGGA	1 cut(s)	566
Bsp143I	GATC	4 cut(s)	493, 563, 660, 766
Bsp1720I	GCTNAGC	1 cut(s)	13
BspACI	CCGC	8 cut(s)	18, 51, 126, 140, 166, 216, 240, 689
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	2 cut(s)	580, 742
BspEI	TCCGGA	1 cut(s)	566
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	5 cut(s)	208, 255, 256, 276, 424
BspPI	GGATC	3 cut(s)	558, 655, 761
BspT107I	GGYRCC	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	689
BsrDI	GCAATG	1 cut(s)	769
BssECI	CCNNGG	5 cut(s)	57, 249, 250, 379, 535
BssMI	GATC	4 cut(s)	493, 563, 660, 766
BssSI	CACGAG	1 cut(s)	606
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	4 cut(s)	251, 380, 508, 536
BstC8I	GCNNGC	2 cut(s)	330, 488
BstDEI	CTNAG	4 cut(s)	13, 108, 588, 750
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	3 cut(s)	183, 764, 771
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	295
BstKTI	GATC	4 cut(s)	496, 566, 663, 769
BstMBI	GATC	4 cut(s)	493, 563, 660, 766
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 292
BstNI	CCWGG	4 cut(s)	251, 380, 508, 536
BstSCI	CCNGG	6 cut(s)	249, 277, 346, 378, 506, 534
BstSLI	GKGCMC	1 cut(s)	348
BstUI	CGCG	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	614
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	2 cut(s)	563, 660
BstYI	RGATCY	2 cut(s)	563, 660
BsuRI	GGCC	1 cut(s)	207
BtgI	CCRYGG	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	412
BtsCI	GGATG	3 cut(s)	183, 764, 771
Cac8I	GCNNGC	2 cut(s)	330, 488
CfoI	GCGC	1 cut(s)	295
Cfr13I	GGNCC	4 cut(s)	153, 206, 254, 504
Csp6I	GTAC	4 cut(s)	373, 457, 697, 709
CviQI	GTAC	4 cut(s)	373, 457, 697, 709
DdeI	CTNAG	4 cut(s)	13, 108, 588, 750
DpnI	GATC	4 cut(s)	495, 565, 662, 768
DpnII	GATC	4 cut(s)	493, 563, 660, 766
EciI	GGCGGA	1 cut(s)	229
Eco47I	GGWCC	3 cut(s)	153, 254, 504
Eco88I	CYCGRG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	4 cut(s)	249, 378, 506, 534
FaiI	YATR	1 cut(s)	574
FaqI	GGGAC	3 cut(s)	240, 565, 738
FauI	CCCGC	2 cut(s)	133, 147
Fnu4HI	GCNGC	2 cut(s)	18, 603
FokI	GGATG	3 cut(s)	170, 758, 771
Fsp4HI	GCNGC	2 cut(s)	18, 603
GlaI	GCGC	1 cut(s)	294
GluI	GCNGC	2 cut(s)	18, 603
GsaI	CCCAGC	2 cut(s)	309, 433
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	6 cut(s)	151, 272, 278, 348, 420, 567
HhaI	GCGC	1 cut(s)	295
Hin6I	GCGC	1 cut(s)	293
HinP1I	GCGC	1 cut(s)	293
HindIII	AAGCTT	1 cut(s)	10
HinfI	GANTC	2 cut(s)	233, 611
HpaII	CCGG	6 cut(s)	151, 272, 278, 348, 420, 567
HphI	GGTGA	2 cut(s)	27, 554
Hpy166II	GTNNAC	1 cut(s)	640
Hpy188I	TCNGA	5 cut(s)	116, 232, 302, 439, 776
Hpy188III	TCNNGA	5 cut(s)	257, 445, 550, 567, 617
Hpy8I	GTNNAC	1 cut(s)	640
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	3 cut(s)	172, 592, 674
HpyCH4IV	ACGT	3 cut(s)	267, 411, 727
HpyCH4V	TGCA	5 cut(s)	391, 454, 474, 716, 762
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 292
HpyF3I	CTNAG	4 cut(s)	13, 108, 588, 750
HpySE526I	ACGT	3 cut(s)	267, 411, 727
HspAI	GCGC	1 cut(s)	293
KflI	GGGWCCC	1 cut(s)	254
Kpn2I	TCCGGA	1 cut(s)	566
Kzo9I	GATC	4 cut(s)	493, 563, 660, 766
LmnI	GCTCC	3 cut(s)	117, 280, 302
Lsp1109I	GCAGC	1 cut(s)	614
LweI	GCATC	2 cut(s)	749, 767
MaeII	ACGT	3 cut(s)	267, 411, 727
MaeIII	GTNAC	4 cut(s)	86, 352, 401, 652
MalI	GATC	4 cut(s)	495, 565, 662, 768
MbiI	CCGCTC	1 cut(s)	689
MboI	GATC	4 cut(s)	493, 563, 660, 766
MboII	GAAGA	2 cut(s)	370, 643
MflI	RGATCY	2 cut(s)	563, 660
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	2 cut(s)	74, 133
MmeI	TCCRAC	1 cut(s)	139
MnlI	CCTC	8 cut(s)	43, 139, 197, 247, 358, 400, 433, 685
MroI	TCCGGA	1 cut(s)	566
MspI	CCGG	6 cut(s)	151, 272, 278, 348, 420, 567
MspR9I	CCNGG	6 cut(s)	251, 279, 348, 380, 508, 536
MvaI	CCWGG	4 cut(s)	251, 380, 508, 536
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	59, 292
NciI	CCSGG	2 cut(s)	279, 348
NdeII	GATC	4 cut(s)	493, 563, 660, 766
NlaIV	GGNNCC	5 cut(s)	208, 255, 256, 276, 424
NmuCI	GTSAC	2 cut(s)	352, 652
PasI	CCCWGGG	1 cut(s)	250
PfeI	GAWTC	2 cut(s)	233, 611
PkrI	GCNGC	2 cut(s)	19, 604
PpuMI	RGGWCCY	1 cut(s)	254
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	4 cut(s)	249, 378, 506, 534
PspFI	CCCAGC	2 cut(s)	305, 429
PspGI	CCWGG	4 cut(s)	249, 378, 506, 534
PspN4I	GGNNCC	5 cut(s)	208, 255, 256, 276, 424
PspPI	GGNCC	4 cut(s)	153, 206, 254, 504
PspPPI	RGGWCCY	1 cut(s)	254
PsuI	RGATCY	2 cut(s)	563, 660
RsaI	GTAC	4 cut(s)	374, 458, 698, 710
RsaNI	GTAC	4 cut(s)	373, 457, 697, 709
SatI	GCNGC	2 cut(s)	18, 603
Sau3AI	GATC	4 cut(s)	493, 563, 660, 766
Sau96I	GGNCC	4 cut(s)	153, 206, 254, 504
ScrFI	CCNGG	6 cut(s)	251, 279, 348, 380, 508, 536
SduI	GDGCHC	1 cut(s)	348
SfaNI	GCATC	2 cut(s)	749, 767
SinI	GGWCC	3 cut(s)	153, 254, 504
Sse9I	AATT	2 cut(s)	74, 133
SsiI	CCGC	8 cut(s)	18, 51, 126, 140, 166, 216, 240, 689
StyD4I	CCNGG	6 cut(s)	249, 277, 346, 378, 506, 534
TaiI	ACGT	3 cut(s)	270, 414, 730
TaqI	TCGA	2 cut(s)	324, 492
TasI	AATT	2 cut(s)	74, 133
TauI	GCSGC	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	233, 611
TseFI	GTSAC	2 cut(s)	352, 652
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	2 cut(s)	352, 652
TspDTI	ATGAA	1 cut(s)	194
TspGWI	ACGGA	1 cut(s)	377
VpaK11BI	GGWCC	3 cut(s)	153, 254, 504
XapI	RAATTY	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.