Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Reverse (-)

60316235 .. 60318918

Gene Structure 2684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG381700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGCTCAAAACCTTAGCCACCATCTCCACCACATCACCACTCCTCTCCACCACCATAACCACCTCCGCCACCACGGCGAAACTCTCTCTCTCCTCCTCCTTCCTCCTCTCTCTCTCCAAATTCCGCCCCAAACCGACCTCCCCTTTCCCCCAAACCCGCCGCCCCATCTCCCTCCACAGGCCCACCATGAACATCCTCAACCGCCTCGGCTTCGGGCCCAAGACCCCCGACCCGAACTCCGAGTCCGCCGCCATCGCCCAGGGCCCCGACGACGACGTTCCGGCGCCGGGTCAGCAGTTCGCGCAGTTCGGAGCCGGGTGCTTCTGGGGGGTAGAATTGGCATTTCAGAGAGTCCCCGGCGTCACCAAAACGGAGGTCGGGTACTCTCAGGGGTTGCTCCACAATCCCAGCTATGAAGACGTGTGTACCGGGACGACGAGTCACTCTGAGGTCGTGAGGGTTCAGTATGACCCTAAAGACTGTAGCTTTGACACTCTGCTTGATCTCTTTTGGTCCAGGCATGATCCCACGACGCTCAATCGCCAGGGTGGTGATGTGGGTACGCAATACAGATCCGGAATCTACTTCTACACACCTGAGCAAGAGCAAGCAGCAAAAGAATCTCTGGAGAAACACCAGAAGGTCGTGAACCGACCAATTGTTACAGAAATTCTTCCTGCCAAGAAGTTCTACCGAGCAGAGGAGTACCACCAGCAGTACCTTGCCAAAGGGGGCCGCTTTGGATTTAGGCAATCTACTGAGAAAGGATGCAATGATCCAATCCGATGCTATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

265

Amino Acids

29.4

Weight (kDa)

8.74

Isoelectric Point (pI)

45.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	101 - 243	8.8e-60	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AccII	CGCG	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	575
AciI	CCGC	8 cut(s)	66, 124, 157, 160, 202, 246, 249, 736
AclWI	GGATC	3 cut(s)	518, 567, 770
AcsI	RAATTY	2 cut(s)	119, 669
AcyI	GRCGYC	2 cut(s)	284, 360
AfaI	GTAC	5 cut(s)	383, 427, 562, 707, 719
AfiI	CCNNNNNNNGG	3 cut(s)	177, 287, 700
AflIII	ACRYGT	1 cut(s)	420
AhdI	GACNNNNNGTC	1 cut(s)	438
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	3 cut(s)	258, 515, 543
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AluBI	AGCT	2 cut(s)	411, 486
AluI	AGCT	2 cut(s)	411, 486
AlwI	GGATC	3 cut(s)	518, 567, 770
Aor13HI	TCCGGA	1 cut(s)	575
AoxI	GGCC	4 cut(s)	179, 215, 262, 733
ApaI	GGGCCC	2 cut(s)	219, 266
ApeKI	GCWGC	1 cut(s)	611
ApoI	RAATTY	2 cut(s)	119, 669
ArsI	GACNNNNNNTTYG	6 cut(s)	227, 259, 360, 392, 470, 502
Asp700I	GAANNNNTTC	1 cut(s)	672
AspLEI	GCGC	2 cut(s)	286, 304
AspS9I	GGNCC	7 cut(s)	180, 215, 216, 262, 263, 513, 733
AsuC2I	CCSGG	4 cut(s)	288, 316, 357, 430
AsuHPI	GGTGA	3 cut(s)	27, 355, 563
AvaII	GGWCC	1 cut(s)	513
BaeGI	GKGCMC	2 cut(s)	219, 266
BaeI	ACNNNNGTAYC	2 cut(s)	409, 442
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	2 cut(s)	219, 266
BbsI	GAAGAC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	623
BccI	CCATC	3 cut(s)	29, 173, 260
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	3 cut(s)	260, 517, 545
BcnI	CCSGG	4 cut(s)	288, 316, 357, 430
BfmI	CTRYAG	1 cut(s)	481
BfoI	RGCGCY	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	4 cut(s)	160, 249, 612, 736
BlsI	GCNGC	4 cut(s)	161, 250, 613, 737
Bme1390I	CCNGG	7 cut(s)	260, 288, 316, 357, 430, 517, 545
Bme18I	GGWCC	1 cut(s)	513
BmeRI	GACNNNNNGTC	1 cut(s)	438
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	7 cut(s)	180, 215, 216, 262, 263, 513, 733
BmiI	GGNNCC	6 cut(s)	217, 264, 265, 285, 313, 734
BmrFI	CCNGG	7 cut(s)	260, 288, 316, 357, 430, 517, 545
BmsI	GCATC	2 cut(s)	758, 776
BpiI	GAAGAC	1 cut(s)	423
BpmI	CTGGAG	1 cut(s)	647
Bpu10I	CCTNAGC	2 cut(s)	13, 597
BpuMI	CCSGG	4 cut(s)	288, 316, 357, 430
BsaHI	GRCGYC	2 cut(s)	284, 360
BsaJI	CCNNGG	6 cut(s)	72, 205, 258, 259, 355, 544
BsaWI	WCCGGW	1 cut(s)	575
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 365, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 287, 700
Bse3DI	GCAATG	1 cut(s)	778
BseAI	TCCGGA	1 cut(s)	575
BseBI	CCWGG	3 cut(s)	260, 517, 545
BseDI	CCNNGG	6 cut(s)	72, 205, 258, 259, 355, 544
BseGI	GGATG	2 cut(s)	192, 773
BseLI	CCNNNNNNNGG	3 cut(s)	177, 287, 700
BseMI	GCAATG	1 cut(s)	778
BseMII	CTCAG	4 cut(s)	401, 438, 588, 750
BseRI	GAGGAG	5 cut(s)	32, 82, 85, 95, 716
BseSI	GKGCMC	2 cut(s)	219, 266
BseXI	GCAGC	1 cut(s)	623
BseYI	CCCAGC	1 cut(s)	407
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	4 cut(s)	181, 217, 264, 735
BshNI	GGYRCC	1 cut(s)	283
BsiSI	CCGG	6 cut(s)	281, 287, 315, 357, 429, 576
BslFI	GGGAC	2 cut(s)	338, 445
BslI	CCNNNNNNNGG	3 cut(s)	177, 287, 700
BsmFI	GGGAC	2 cut(s)	338, 445
BsnI	GGCC	4 cut(s)	181, 217, 264, 735
Bsp120I	GGGCCC	2 cut(s)	215, 262
Bsp1286I	GDGCHC	2 cut(s)	219, 266
Bsp13I	TCCGGA	1 cut(s)	575
Bsp143I	GATC	4 cut(s)	502, 523, 572, 775
BspACI	CCGC	8 cut(s)	66, 124, 157, 160, 202, 246, 249, 736
BspANI	GGCC	4 cut(s)	181, 217, 264, 735
BspCNI	CTCAG	4 cut(s)	400, 439, 589, 751
BspEI	TCCGGA	1 cut(s)	575
BspFNI	CGCG	1 cut(s)	302
BspLI	GGNNCC	6 cut(s)	217, 264, 265, 285, 313, 734
BspPI	GGATC	3 cut(s)	518, 567, 770
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	778
BssECI	CCNNGG	6 cut(s)	72, 205, 258, 259, 355, 544
BssMI	GATC	4 cut(s)	502, 523, 572, 775
BssNI	GRCGYC	2 cut(s)	284, 360
Bst2UI	CCWGG	3 cut(s)	260, 517, 545
Bst4CI	ACNGT	1 cut(s)	482
BstACI	GRCGYC	2 cut(s)	284, 360
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	5 cut(s)	13, 387, 447, 597, 759
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	192, 773
BstFNI	CGCG	1 cut(s)	302
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	2 cut(s)	286, 304
BstKTI	GATC	4 cut(s)	505, 526, 575, 778
BstMBI	GATC	4 cut(s)	502, 523, 572, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 254, 292, 301
BstNI	CCWGG	3 cut(s)	260, 517, 545
BstSCI	CCNGG	7 cut(s)	258, 286, 314, 355, 428, 515, 543
BstSFI	CTRYAG	1 cut(s)	481
BstSLI	GKGCMC	2 cut(s)	219, 266
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	1 cut(s)	623
BstV2I	GAAGAC	1 cut(s)	423
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BsuRI	GGCC	4 cut(s)	181, 217, 264, 735
BtgI	CCRYGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	238
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	2 cut(s)	192, 773
Cac8I	GCNNGC	1 cut(s)	609
CfoI	GCGC	2 cut(s)	286, 304
Cfr13I	GGNCC	7 cut(s)	180, 215, 216, 262, 263, 513, 733
CseI	GACGC	2 cut(s)	349, 541
Csp6I	GTAC	5 cut(s)	382, 426, 561, 706, 718
CviAII	CATG	2 cut(s)	187, 521
CviQI	GTAC	5 cut(s)	382, 426, 561, 706, 718
DdeI	CTNAG	5 cut(s)	13, 387, 447, 597, 759
DinI	GGCGCC	1 cut(s)	285
DpnI	GATC	4 cut(s)	504, 525, 574, 777
DpnII	GATC	4 cut(s)	502, 523, 572, 775
DriI	GACNNNNNGTC	1 cut(s)	438
Eam1105I	GACNNNNNGTC	1 cut(s)	438
EciI	GGCGGA	3 cut(s)	55, 113, 235
Eco24I	GRGCYC	2 cut(s)	219, 266
Eco47I	GGWCC	1 cut(s)	513
EcoO109I	RGGNCCY	2 cut(s)	262, 263
EcoRII	CCWGG	3 cut(s)	258, 515, 543
EcoT38I	GRGCYC	2 cut(s)	219, 266
EgeI	GGCGCC	1 cut(s)	285
EheI	GGCGCC	1 cut(s)	285
FaeI	CATG	2 cut(s)	190, 524
FaiI	YATR	6 cut(s)	56, 188, 414, 468, 522, 792
FaqI	GGGAC	2 cut(s)	338, 445
FatI	CATG	2 cut(s)	186, 520
FauI	CCCGC	1 cut(s)	164
Fnu4HI	GCNGC	4 cut(s)	160, 249, 612, 736
FokI	GGATG	2 cut(s)	179, 780
FriOI	GRGCYC	2 cut(s)	219, 266
Fsp4HI	GCNGC	4 cut(s)	160, 249, 612, 736
GlaI	GCGC	2 cut(s)	285, 303
GluI	GCNGC	4 cut(s)	160, 249, 612, 736
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	4 cut(s)	181, 217, 264, 735
HapII	CCGG	6 cut(s)	281, 287, 315, 357, 429, 576
HgaI	GACGC	2 cut(s)	349, 541
HhaI	GCGC	2 cut(s)	286, 304
Hin1I	GRCGYC	2 cut(s)	284, 360
Hin1II	CATG	2 cut(s)	190, 524
Hin6I	GCGC	2 cut(s)	284, 302
HinP1I	GCGC	2 cut(s)	284, 302
HinfI	GANTC	5 cut(s)	242, 351, 439, 579, 620
HpaII	CCGG	6 cut(s)	281, 287, 315, 357, 429, 576
HphI	GGTGA	3 cut(s)	27, 355, 563
Hpy166II	GTNNAC	2 cut(s)	426, 649
Hpy188I	TCNGA	5 cut(s)	241, 311, 348, 448, 785
Hpy188III	TCNNGA	4 cut(s)	454, 576, 626, 646
Hpy8I	GTNNAC	2 cut(s)	426, 649
Hpy99I	CGWCG	5 cut(s)	272, 275, 278, 439, 535
HpyAV	CCTTC	2 cut(s)	109, 634
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	2 cut(s)	276, 420
HpyCH4V	TGCA	1 cut(s)	771
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 254, 292, 301
HpyF3I	CTNAG	5 cut(s)	13, 387, 447, 597, 759
HpySE526I	ACGT	2 cut(s)	276, 420
Hsp92I	GRCGYC	2 cut(s)	284, 360
Hsp92II	CATG	2 cut(s)	190, 524
HspAI	GCGC	2 cut(s)	284, 302
KasI	GGCGCC	1 cut(s)	283
Kpn2I	TCCGGA	1 cut(s)	575
Kzo9I	GATC	4 cut(s)	502, 523, 572, 775
LmnI	GCTCC	2 cut(s)	311, 402
Lsp1109I	GCAGC	1 cut(s)	623
LweI	GCATC	2 cut(s)	758, 776
MaeII	ACGT	2 cut(s)	276, 420
MaeIII	GTNAC	3 cut(s)	361, 440, 661
MalI	GATC	4 cut(s)	504, 525, 574, 777
MboI	GATC	4 cut(s)	502, 523, 572, 775
MboII	GAAGA	2 cut(s)	428, 665
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	1 cut(s)	572
MhlI	GDGCHC	2 cut(s)	219, 266
MluCI	AATT	4 cut(s)	119, 335, 657, 669
Mly113I	GGCGCC	1 cut(s)	284
MlyI	GAGTC	3 cut(s)	251, 360, 448
MroI	TCCGGA	1 cut(s)	575
MroXI	GAANNNNTTC	1 cut(s)	672
MspI	CCGG	6 cut(s)	281, 287, 315, 357, 429, 576
MspR9I	CCNGG	7 cut(s)	260, 288, 316, 357, 430, 517, 545
MunI	CAATTG	1 cut(s)	657
MvaI	CCWGG	3 cut(s)	260, 517, 545
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	4 cut(s)	74, 254, 292, 301
NarI	GGCGCC	1 cut(s)	284
NciI	CCSGG	4 cut(s)	288, 316, 357, 430
NdeII	GATC	4 cut(s)	502, 523, 572, 775
NlaIII	CATG	2 cut(s)	190, 524
NlaIV	GGNNCC	6 cut(s)	217, 264, 265, 285, 313, 734
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	2 cut(s)	361, 440
PasI	CCCWGGG	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	672
PfeI	GAWTC	2 cut(s)	579, 620
PkrI	GCNGC	4 cut(s)	161, 250, 613, 737
PleI	GAGTC	3 cut(s)	250, 359, 447
PluTI	GGCGCC	1 cut(s)	287
PpsI	GAGTC	3 cut(s)	250, 359, 447
Psp6I	CCWGG	3 cut(s)	258, 515, 543
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	3 cut(s)	258, 515, 543
PspN4I	GGNNCC	6 cut(s)	217, 264, 265, 285, 313, 734
PspOMI	GGGCCC	2 cut(s)	215, 262
PspPI	GGNCC	7 cut(s)	180, 215, 216, 262, 263, 513, 733
PsuI	RGATCY	1 cut(s)	572
RsaI	GTAC	5 cut(s)	383, 427, 562, 707, 719
RsaNI	GTAC	5 cut(s)	382, 426, 561, 706, 718
SatI	GCNGC	4 cut(s)	160, 249, 612, 736
Sau3AI	GATC	4 cut(s)	502, 523, 572, 775
Sau96I	GGNCC	7 cut(s)	180, 215, 216, 262, 263, 513, 733
SchI	GAGTC	3 cut(s)	251, 360, 448
ScrFI	CCNGG	7 cut(s)	260, 288, 316, 357, 430, 517, 545
SduI	GDGCHC	2 cut(s)	219, 266
SfaNI	GCATC	2 cut(s)	758, 776
SfcI	CTRYAG	1 cut(s)	481
SfoI	GGCGCC	1 cut(s)	285
SinI	GGWCC	1 cut(s)	513
Sse9I	AATT	4 cut(s)	119, 335, 657, 669
SsiI	CCGC	8 cut(s)	66, 124, 157, 160, 202, 246, 249, 736
SspDI	GGCGCC	1 cut(s)	283
StyD4I	CCNGG	7 cut(s)	258, 286, 314, 355, 428, 515, 543
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	2 cut(s)	279, 423
TasI	AATT	4 cut(s)	119, 335, 657, 669
TauI	GCSGC	3 cut(s)	162, 251, 738
TfiI	GAWTC	2 cut(s)	579, 620
TseFI	GTSAC	2 cut(s)	361, 440
TseI	GCWGC	1 cut(s)	611
Tsp45I	GTSAC	2 cut(s)	361, 440
TspDTI	ATGAA	2 cut(s)	203, 429
TspGWI	ACGGA	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	513
XapI	RAATTY	2 cut(s)	119, 669
XmnI	GAANNNNTTC	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.