Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Reverse (-)

23530426 .. 23532868

Gene Structure 2443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCTCACATTCTTCACCACCACCACCGCAACGGTACCTAAATTCTCCCTCTCTAACCCCTTCCTTTCTCTCTCTAAACTCCGACACAAACCCGCCTCCAATTTCCCGCAGACCCACAGGACCATCTCCTTCCGCACCCCCCAAATGAACATCCTCAACAAGCTCGGCTTCGGCCCCAAGACCGCTTACCCCAACTCCGAATCCTCCTCTATCGCCCAGGGCCCCGACGATGACGTTCCGGCGCTGGGTCAGCAGTTCGCCCAGTTTGGAGCCGGGTGCTTCTGGGGTGTCGAGCTGGCGTTTCAGCGAGTACCCGGCGTGACGAAGACGGAGGTTGGGTACACCCAGGGGTTTCTGCACAACCCGAGTTACGAGGACGTGTGTACCGGCACCACCCGGCACTCGGAGGTTGTGAGAGTGCAGTACGACCCTAAAGAGTGCAACTTTGAGAGCCTGCTCGATCTTTTCTGGTCCAGGCACGACCCCACCACGCTCAATCGCCAGGGTGGTGATGTTGGGACACAATACAGATCTGGAATATACTTCTATGCACCTGACCAAGAGAAGGAAGCACGCGAATCTCTGGAGCAACACCAGAAGAAAGTGAACCGAAAGATTGTCACAGAGATCCTTCCTGCCAAGAAGTTCTACCGAGCGGAGGAGTACCACCAGCAGTACCTTGCAAAAGGGGGACGTTTTGGTTTTAGGCAATCTACTGAGAAAGGATGCAATCGATCCAATCCGATGCTACGGCTAATCTATTTGGTTATGTCTCTAAAGGCAAACCGTACTCGTTATTGTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

269

Amino Acids

30.54

Weight (kDa)

9.38

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	34
AccB1I	GGYRCC	2 cut(s)	34, 389
AccBSI	CCGCTC	1 cut(s)	656
AccII	CGCG	1 cut(s)	576
AciI	CCGC	6 cut(s)	27, 93, 107, 133, 183, 656
AclWI	GGATC	2 cut(s)	622, 729
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	8 cut(s)	36, 312, 341, 385, 425, 665, 677, 790
AfiI	CCNNNNNNNGG	4 cut(s)	245, 403, 565, 658
AflIII	ACRYGT	1 cut(s)	378
AjiI	CACGTC	1 cut(s)	379
AjnI	CCWGG	4 cut(s)	216, 345, 473, 501
AluBI	AGCT	2 cut(s)	163, 295
AluI	AGCT	2 cut(s)	163, 295
Alw26I	GTCTC	1 cut(s)	777
AlwI	GGATC	2 cut(s)	622, 729
Ama87I	CYCGRG	1 cut(s)	364
AoxI	GGCC	2 cut(s)	172, 220
ApaI	GGGCCC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	41
Asp718I	GGTACC	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	5 cut(s)	120, 173, 220, 221, 471
AsuC2I	CCSGG	3 cut(s)	274, 315, 397
AsuHPI	GGTGA	2 cut(s)	7, 521
AvaI	CYCGRG	1 cut(s)	364
AvaII	GGWCC	2 cut(s)	120, 471
BaeGI	GKGCMC	1 cut(s)	224
BaeI	ACNNNNGTAYC	2 cut(s)	367, 400
BanI	GGYRCC	2 cut(s)	34, 389
BanII	GRGCYC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	332
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	767
BciT130I	CCWGG	4 cut(s)	218, 347, 475, 503
BcnI	CCSGG	3 cut(s)	274, 315, 397
BcoDI	GTCTC	1 cut(s)	777
BfoI	RGCGCY	1 cut(s)	245
BglII	AGATCT	1 cut(s)	530
Bme1390I	CCNGG	7 cut(s)	218, 274, 315, 347, 397, 475, 503
Bme18I	GGWCC	2 cut(s)	120, 471
BmeT110I	CYCGRG	1 cut(s)	364
BmgBI	CACGTC	1 cut(s)	379
BmgT120I	GGNCC	5 cut(s)	120, 173, 220, 221, 471
BmiI	GGNNCC	6 cut(s)	36, 175, 222, 223, 271, 391
BmrFI	CCNGG	7 cut(s)	218, 274, 315, 347, 397, 475, 503
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	2 cut(s)	716, 735
BmuI	ACTGGG	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	605
BpuMI	CCSGG	3 cut(s)	274, 315, 397
Bsa29I	ATCGAT	1 cut(s)	733
BsaJI	CCNNGG	5 cut(s)	216, 217, 345, 346, 502
BsaXI	ACNNNNNCTCC	4 cut(s)	179, 209, 323, 353
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 403, 565, 658
Bse118I	RCCGGY	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	4 cut(s)	218, 347, 475, 503
BseCI	ATCGAT	1 cut(s)	733
BseDI	CCNNGG	5 cut(s)	216, 217, 345, 346, 502
BseGI	GGATG	2 cut(s)	150, 731
BseLI	CCNNNNNNNGG	4 cut(s)	245, 403, 565, 658
BseMII	CTCAG	1 cut(s)	708
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	2 cut(s)	196, 674
BseSI	GKGCMC	1 cut(s)	224
BseYI	CCCAGC	1 cut(s)	244
BsgI	GTGCAG	2 cut(s)	341, 440
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	2 cut(s)	174, 222
BshNI	GGYRCC	2 cut(s)	34, 389
BshVI	ATCGAT	1 cut(s)	733
BsiHKCI	CYCGRG	1 cut(s)	364
BsiSI	CCGG	5 cut(s)	239, 273, 315, 387, 397
BslFI	GGGAC	2 cut(s)	532, 705
BslI	CCNNNNNNNGG	4 cut(s)	245, 403, 565, 658
BsmAI	GTCTC	1 cut(s)	777
BsmFI	GGGAC	2 cut(s)	532, 705
BsnI	GGCC	2 cut(s)	174, 222
BsoBI	CYCGRG	1 cut(s)	364
Bsp120I	GGGCCC	1 cut(s)	220
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	4 cut(s)	460, 530, 627, 734
BspACI	CCGC	6 cut(s)	27, 93, 107, 133, 183, 656
BspANI	GGCC	2 cut(s)	174, 222
BspCNI	CTCAG	1 cut(s)	709
BspDI	ATCGAT	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	576
BspLI	GGNNCC	6 cut(s)	36, 175, 222, 223, 271, 391
BspPI	GGATC	2 cut(s)	622, 729
BspT107I	GGYRCC	2 cut(s)	34, 389
BsrBI	CCGCTC	1 cut(s)	656
BsrFI	RCCGGY	1 cut(s)	386
BsrI	ACTGG	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	5 cut(s)	216, 217, 345, 346, 502
BssMI	GATC	4 cut(s)	460, 530, 627, 734
Bst2UI	CCWGG	4 cut(s)	218, 347, 475, 503
Bst4CI	ACNGT	2 cut(s)	34, 788
BstC8I	GCNNGC	3 cut(s)	297, 455, 574
BstDEI	CTNAG	1 cut(s)	717
BstF5I	GGATG	2 cut(s)	150, 731
BstFNI	CGCG	1 cut(s)	576
BstH2I	RGCGCY	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	4 cut(s)	463, 533, 630, 737
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	4 cut(s)	460, 530, 627, 734
BstMWI	GCNNNNNNNGC	1 cut(s)	250
BstNI	CCWGG	4 cut(s)	218, 347, 475, 503
BstSCI	CCNGG	7 cut(s)	216, 272, 313, 345, 395, 473, 501
BstSLI	GKGCMC	1 cut(s)	224
BstUI	CGCG	1 cut(s)	576
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	2 cut(s)	530, 627
BstYI	RGATCY	2 cut(s)	530, 627
Bsu15I	ATCGAT	1 cut(s)	733
BsuRI	GGCC	2 cut(s)	174, 222
BsuTUI	ATCGAT	1 cut(s)	733
BtrI	CACGTC	1 cut(s)	379
BtsCI	GGATG	2 cut(s)	150, 731
Cac8I	GCNNGC	3 cut(s)	297, 455, 574
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	386
Cfr13I	GGNCC	5 cut(s)	120, 173, 220, 221, 471
ClaI	ATCGAT	1 cut(s)	733
Csp6I	GTAC	8 cut(s)	35, 311, 340, 384, 424, 664, 676, 789
CviJI	RGCY	8 cut(s)	163, 168, 174, 222, 272, 295, 453, 754
CviKI_1	RGCY	8 cut(s)	163, 168, 174, 222, 272, 295, 453, 754
CviQI	GTAC	8 cut(s)	35, 311, 340, 384, 424, 664, 676, 789
DdeI	CTNAG	1 cut(s)	717
DpnI	GATC	4 cut(s)	462, 532, 629, 736
DpnII	GATC	4 cut(s)	460, 530, 627, 734
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	120, 471
Eco88I	CYCGRG	1 cut(s)	364
EcoO109I	RGGNCCY	2 cut(s)	220, 221
EcoRII	CCWGG	4 cut(s)	216, 345, 473, 501
EcoT38I	GRGCYC	1 cut(s)	224
FaiI	YATR	4 cut(s)	541, 549, 770, 805
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	2 cut(s)	532, 705
FauI	CCCGC	2 cut(s)	100, 114
FokI	GGATG	2 cut(s)	137, 738
FriOI	GRGCYC	1 cut(s)	224
GlaI	GCGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	605
HaeII	RGCGCY	1 cut(s)	245
HaeIII	GGCC	2 cut(s)	174, 222
HapII	CCGG	5 cut(s)	239, 273, 315, 387, 397
HhaI	GCGC	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	2 cut(s)	200, 578
HpaII	CCGG	5 cut(s)	239, 273, 315, 387, 397
HphI	GGTGA	2 cut(s)	7, 521
Hpy166II	GTNNAC	3 cut(s)	342, 384, 607
Hpy188I	TCNGA	4 cut(s)	83, 199, 406, 744
Hpy188III	TCNNGA	2 cut(s)	534, 584
Hpy8I	GTNNAC	3 cut(s)	342, 384, 607
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	4 cut(s)	70, 139, 559, 641
HpyCH4III	ACNGT	2 cut(s)	34, 788
HpyCH4IV	ACGT	3 cut(s)	234, 378, 694
HpyCH4V	TGCA	6 cut(s)	358, 421, 441, 551, 683, 729
HpyF10VI	GCNNNNNNNGC	1 cut(s)	250
HpyF3I	CTNAG	1 cut(s)	717
HpySE526I	ACGT	3 cut(s)	234, 378, 694
HspAI	GCGC	1 cut(s)	242
KpnI	GGTACC	1 cut(s)	38
Kzo9I	GATC	4 cut(s)	460, 530, 627, 734
LmnI	GCTCC	2 cut(s)	269, 586
LweI	GCATC	2 cut(s)	716, 735
MaeII	ACGT	3 cut(s)	234, 378, 694
MaeIII	GTNAC	3 cut(s)	319, 368, 619
MalI	GATC	4 cut(s)	462, 532, 629, 736
MbiI	CCGCTC	1 cut(s)	656
MboI	GATC	4 cut(s)	460, 530, 627, 734
MboII	GAAGA	3 cut(s)	4, 337, 610
MflI	RGATCY	2 cut(s)	530, 627
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	2 cut(s)	41, 100
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	9 cut(s)	59, 106, 164, 214, 217, 325, 367, 400, 652
MspI	CCGG	5 cut(s)	239, 273, 315, 387, 397
MspR9I	CCNGG	7 cut(s)	218, 274, 315, 347, 397, 475, 503
MvaI	CCWGG	4 cut(s)	218, 347, 475, 503
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	1 cut(s)	250
NciI	CCSGG	3 cut(s)	274, 315, 397
NdeII	GATC	4 cut(s)	460, 530, 627, 734
NlaIV	GGNNCC	6 cut(s)	36, 175, 222, 223, 271, 391
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	2 cut(s)	319, 619
PasI	CCCWGGG	2 cut(s)	217, 346
PfeI	GAWTC	2 cut(s)	200, 578
Psp6I	CCWGG	4 cut(s)	216, 345, 473, 501
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	4 cut(s)	216, 345, 473, 501
PspN4I	GGNNCC	6 cut(s)	36, 175, 222, 223, 271, 391
PspOMI	GGGCCC	1 cut(s)	220
PspPI	GGNCC	5 cut(s)	120, 173, 220, 221, 471
PsuI	RGATCY	2 cut(s)	530, 627
RsaI	GTAC	8 cut(s)	36, 312, 341, 385, 425, 665, 677, 790
RsaNI	GTAC	8 cut(s)	35, 311, 340, 384, 424, 664, 676, 789
Sau3AI	GATC	4 cut(s)	460, 530, 627, 734
Sau96I	GGNCC	5 cut(s)	120, 173, 220, 221, 471
ScrFI	CCNGG	7 cut(s)	218, 274, 315, 347, 397, 475, 503
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	2 cut(s)	716, 735
SinI	GGWCC	2 cut(s)	120, 471
Sse9I	AATT	2 cut(s)	41, 100
SsiI	CCGC	6 cut(s)	27, 93, 107, 133, 183, 656
StyD4I	CCNGG	7 cut(s)	216, 272, 313, 345, 395, 473, 501
TaaI	ACNGT	2 cut(s)	34, 788
TaiI	ACGT	3 cut(s)	237, 381, 697
TaqI	TCGA	3 cut(s)	291, 459, 733
TasI	AATT	2 cut(s)	41, 100
TfiI	GAWTC	2 cut(s)	200, 578
TseFI	GTSAC	2 cut(s)	319, 619
Tsp45I	GTSAC	2 cut(s)	319, 619
TspDTI	ATGAA	2 cut(s)	161, 792
TspGWI	ACGGA	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	120, 471
XapI	RAATTY	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.