Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Reverse (-)

61714126 .. 61716788

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG386900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGAACATCCTCAACCGCCTCGGCTTCGGGCCCAAGACCCCCGACCCGAACTCCGAGTCCGCCGCCATCGCCCAGGGCCCCGACGACGACGTTCCGGCGCCGGGTCAGCAGTTCGCGCAGTTCGGAGCCGGGTGCTTCTGGGGGGTAGAATTGGCATTTCAGAGAGTCCCCGGCGTCACCAAAACGGAGGTCGGCTACTCTCAGGGTTTGCTCCACAATCCCAGCTATGAAGACGTGTGTACCGGGACGACGAGTCACTCTGAGGTCGTGAGGGTTCAGTATGACCCGAAAGACTGTAGCTTTGAGACTCTGCTTGATCTCTTTTGGTCCAGGCATGATCCCACGACGCTCAATCGCCAGGGTGGTGATGTGGGTACGCAATACAGATCCGGAATCTACTTCTACACACCTGAGCAAGAGCAAGCAGCAAAAGAATCTCTGGAGAAACACCAGAAGGTCGTGAACCGACCAATTGTTACAGAAATTCTTCCTGCCAAGAAGTTCTACCGAGCAGAGGAGTACCACCAGCAGTACCTTGCCAAAGGGGGCCGCTTTGGATTTAGGCAATCTACTGAGAAAGGATGCAATGATCCAATCCGATGCTATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

203

Amino Acids

22.72

Weight (kDa)

5.75

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	39 - 181	2.3e-60	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccII	CGCG	1 cut(s)	116
AccIII	TCCGGA	1 cut(s)	389
AciI	CCGC	4 cut(s)	16, 60, 63, 550
AclWI	GGATC	3 cut(s)	332, 381, 584
AcsI	RAATTY	1 cut(s)	483
AcyI	GRCGYC	2 cut(s)	98, 174
AfaI	GTAC	4 cut(s)	241, 376, 521, 533
AfiI	CCNNNNNNNGG	2 cut(s)	101, 514
AflIII	ACRYGT	1 cut(s)	234
AhdI	GACNNNNNGTC	1 cut(s)	252
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	3 cut(s)	72, 329, 357
AloI	GAACNNNNNNTCC	2 cut(s)	41, 73
AluBI	AGCT	2 cut(s)	225, 300
AluI	AGCT	2 cut(s)	225, 300
Alw26I	GTCTC	1 cut(s)	299
AlwI	GGATC	3 cut(s)	332, 381, 584
Aor13HI	TCCGGA	1 cut(s)	389
AoxI	GGCC	3 cut(s)	29, 76, 547
ApaI	GGGCCC	2 cut(s)	33, 80
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	483
ArsI	GACNNNNNNTTYG	6 cut(s)	41, 73, 174, 206, 284, 316
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	2 cut(s)	100, 118
AspS9I	GGNCC	6 cut(s)	29, 30, 76, 77, 327, 547
AsuC2I	CCSGG	4 cut(s)	102, 130, 171, 244
AsuHPI	GGTGA	2 cut(s)	169, 377
AvaII	GGWCC	1 cut(s)	327
BaeGI	GKGCMC	2 cut(s)	33, 80
BaeI	ACNNNNGTAYC	2 cut(s)	223, 256
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	2 cut(s)	33, 80
BbsI	GAAGAC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	3 cut(s)	74, 331, 359
BcnI	CCSGG	4 cut(s)	102, 130, 171, 244
BcoDI	GTCTC	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	295
BfoI	RGCGCY	1 cut(s)	101
BisI	GCNGC	3 cut(s)	63, 426, 550
BlsI	GCNGC	3 cut(s)	64, 427, 551
Bme1390I	CCNGG	7 cut(s)	74, 102, 130, 171, 244, 331, 359
Bme18I	GGWCC	1 cut(s)	327
BmeRI	GACNNNNNGTC	1 cut(s)	252
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	6 cut(s)	29, 30, 76, 77, 327, 547
BmiI	GGNNCC	6 cut(s)	31, 78, 79, 99, 127, 548
BmrFI	CCNGG	7 cut(s)	74, 102, 130, 171, 244, 331, 359
BmsI	GCATC	2 cut(s)	572, 590
BpiI	GAAGAC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	461
Bpu10I	CCTNAGC	1 cut(s)	411
BpuMI	CCSGG	4 cut(s)	102, 130, 171, 244
BsaHI	GRCGYC	2 cut(s)	98, 174
BsaJI	CCNNGG	5 cut(s)	19, 72, 73, 169, 358
BsaWI	WCCGGW	1 cut(s)	389
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 514
Bse3DI	GCAATG	1 cut(s)	592
BseAI	TCCGGA	1 cut(s)	389
BseBI	CCWGG	3 cut(s)	74, 331, 359
BseDI	CCNNGG	5 cut(s)	19, 72, 73, 169, 358
BseGI	GGATG	2 cut(s)	6, 587
BseLI	CCNNNNNNNGG	2 cut(s)	101, 514
BseMI	GCAATG	1 cut(s)	592
BseMII	CTCAG	4 cut(s)	215, 252, 402, 564
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	2 cut(s)	33, 80
BseXI	GCAGC	1 cut(s)	437
BseYI	CCCAGC	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	3 cut(s)	31, 78, 549
BshNI	GGYRCC	1 cut(s)	97
BsiSI	CCGG	6 cut(s)	95, 101, 129, 171, 243, 390
BslFI	GGGAC	2 cut(s)	152, 259
BslI	CCNNNNNNNGG	2 cut(s)	101, 514
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	2 cut(s)	152, 259
BsnI	GGCC	3 cut(s)	31, 78, 549
Bsp120I	GGGCCC	2 cut(s)	29, 76
Bsp1286I	GDGCHC	2 cut(s)	33, 80
Bsp13I	TCCGGA	1 cut(s)	389
Bsp143I	GATC	4 cut(s)	316, 337, 386, 589
BspACI	CCGC	4 cut(s)	16, 60, 63, 550
BspANI	GGCC	3 cut(s)	31, 78, 549
BspCNI	CTCAG	4 cut(s)	214, 253, 403, 565
BspEI	TCCGGA	1 cut(s)	389
BspFNI	CGCG	1 cut(s)	116
BspLI	GGNNCC	6 cut(s)	31, 78, 79, 99, 127, 548
BspPI	GGATC	3 cut(s)	332, 381, 584
BspT107I	GGYRCC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	592
BssECI	CCNNGG	5 cut(s)	19, 72, 73, 169, 358
BssMI	GATC	4 cut(s)	316, 337, 386, 589
BssNI	GRCGYC	2 cut(s)	98, 174
Bst2UI	CCWGG	3 cut(s)	74, 331, 359
Bst4CI	ACNGT	1 cut(s)	296
BstACI	GRCGYC	2 cut(s)	98, 174
BstC8I	GCNNGC	1 cut(s)	423
BstDEI	CTNAG	4 cut(s)	201, 261, 411, 573
BstF5I	GGATG	2 cut(s)	6, 587
BstFNI	CGCG	1 cut(s)	116
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	2 cut(s)	100, 118
BstKTI	GATC	4 cut(s)	319, 340, 389, 592
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	4 cut(s)	316, 337, 386, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 106, 115
BstNI	CCWGG	3 cut(s)	74, 331, 359
BstSCI	CCNGG	7 cut(s)	72, 100, 128, 169, 242, 329, 357
BstSFI	CTRYAG	1 cut(s)	295
BstSLI	GKGCMC	2 cut(s)	33, 80
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	386
BstYI	RGATCY	1 cut(s)	386
BsuRI	GGCC	3 cut(s)	31, 78, 549
BtgZI	GCGATG	1 cut(s)	52
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	6, 587
Cac8I	GCNNGC	1 cut(s)	423
CfoI	GCGC	2 cut(s)	100, 118
Cfr13I	GGNCC	6 cut(s)	29, 30, 76, 77, 327, 547
CseI	GACGC	2 cut(s)	163, 355
Csp6I	GTAC	4 cut(s)	240, 375, 520, 532
CviAII	CATG	1 cut(s)	335
CviJI	RGCY	9 cut(s)	24, 31, 78, 128, 195, 225, 300, 549, 609
CviKI_1	RGCY	9 cut(s)	24, 31, 78, 128, 195, 225, 300, 549, 609
CviQI	GTAC	4 cut(s)	240, 375, 520, 532
DdeI	CTNAG	4 cut(s)	201, 261, 411, 573
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	4 cut(s)	318, 339, 388, 591
DpnII	GATC	4 cut(s)	316, 337, 386, 589
DriI	GACNNNNNGTC	1 cut(s)	252
Eam1105I	GACNNNNNGTC	1 cut(s)	252
EciI	GGCGGA	1 cut(s)	49
Eco24I	GRGCYC	2 cut(s)	33, 80
Eco47I	GGWCC	1 cut(s)	327
EcoO109I	RGGNCCY	2 cut(s)	76, 77
EcoRII	CCWGG	3 cut(s)	72, 329, 357
EcoT38I	GRGCYC	2 cut(s)	33, 80
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
FaeI	CATG	1 cut(s)	338
FaiI	YATR	4 cut(s)	228, 282, 336, 606
FaqI	GGGAC	2 cut(s)	152, 259
FatI	CATG	1 cut(s)	334
Fnu4HI	GCNGC	3 cut(s)	63, 426, 550
FokI	GGATG	1 cut(s)	594
FriOI	GRGCYC	2 cut(s)	33, 80
Fsp4HI	GCNGC	3 cut(s)	63, 426, 550
GlaI	GCGC	2 cut(s)	99, 117
GluI	GCNGC	3 cut(s)	63, 426, 550
GsaI	CCCAGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	461
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	31, 78, 549
HapII	CCGG	6 cut(s)	95, 101, 129, 171, 243, 390
HgaI	GACGC	2 cut(s)	163, 355
HhaI	GCGC	2 cut(s)	100, 118
Hin1I	GRCGYC	2 cut(s)	98, 174
Hin1II	CATG	1 cut(s)	338
Hin6I	GCGC	2 cut(s)	98, 116
HinP1I	GCGC	2 cut(s)	98, 116
HinfI	GANTC	6 cut(s)	56, 165, 253, 307, 393, 434
HpaII	CCGG	6 cut(s)	95, 101, 129, 171, 243, 390
HphI	GGTGA	2 cut(s)	169, 377
Hpy166II	GTNNAC	2 cut(s)	240, 463
Hpy188I	TCNGA	5 cut(s)	55, 125, 162, 262, 599
Hpy188III	TCNNGA	4 cut(s)	268, 390, 440, 460
Hpy8I	GTNNAC	2 cut(s)	240, 463
Hpy99I	CGWCG	5 cut(s)	86, 89, 92, 253, 349
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	2 cut(s)	90, 234
HpyCH4V	TGCA	1 cut(s)	585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 106, 115
HpyF3I	CTNAG	4 cut(s)	201, 261, 411, 573
HpySE526I	ACGT	2 cut(s)	90, 234
Hsp92I	GRCGYC	2 cut(s)	98, 174
Hsp92II	CATG	1 cut(s)	338
HspAI	GCGC	2 cut(s)	98, 116
KasI	GGCGCC	1 cut(s)	97
Kpn2I	TCCGGA	1 cut(s)	389
Kzo9I	GATC	4 cut(s)	316, 337, 386, 589
LmnI	GCTCC	2 cut(s)	125, 216
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	2 cut(s)	572, 590
MaeII	ACGT	2 cut(s)	90, 234
MaeIII	GTNAC	3 cut(s)	175, 254, 475
MalI	GATC	4 cut(s)	318, 339, 388, 591
MboI	GATC	4 cut(s)	316, 337, 386, 589
MboII	GAAGA	2 cut(s)	242, 479
MfeI	CAATTG	1 cut(s)	471
MflI	RGATCY	1 cut(s)	386
MhlI	GDGCHC	2 cut(s)	33, 80
MluCI	AATT	3 cut(s)	149, 471, 483
Mly113I	GGCGCC	1 cut(s)	98
MlyI	GAGTC	4 cut(s)	65, 174, 262, 301
MnlI	CCTC	6 cut(s)	20, 29, 181, 256, 264, 508
MroI	TCCGGA	1 cut(s)	389
MroXI	GAANNNNTTC	1 cut(s)	486
MspI	CCGG	6 cut(s)	95, 101, 129, 171, 243, 390
MspR9I	CCNGG	7 cut(s)	74, 102, 130, 171, 244, 331, 359
MunI	CAATTG	1 cut(s)	471
MvaI	CCWGG	3 cut(s)	74, 331, 359
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	68, 106, 115
NarI	GGCGCC	1 cut(s)	98
NciI	CCSGG	4 cut(s)	102, 130, 171, 244
NdeII	GATC	4 cut(s)	316, 337, 386, 589
NlaIII	CATG	1 cut(s)	338
NlaIV	GGNNCC	6 cut(s)	31, 78, 79, 99, 127, 548
NmuCI	GTSAC	2 cut(s)	175, 254
PasI	CCCWGGG	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	393, 434
PkrI	GCNGC	3 cut(s)	64, 427, 551
PleI	GAGTC	4 cut(s)	64, 173, 261, 301
PluTI	GGCGCC	1 cut(s)	101
PpsI	GAGTC	4 cut(s)	64, 173, 261, 301
Psp6I	CCWGG	3 cut(s)	72, 329, 357
PspFI	CCCAGC	1 cut(s)	221
PspGI	CCWGG	3 cut(s)	72, 329, 357
PspN4I	GGNNCC	6 cut(s)	31, 78, 79, 99, 127, 548
PspOMI	GGGCCC	2 cut(s)	29, 76
PspPI	GGNCC	6 cut(s)	29, 30, 76, 77, 327, 547
PsuI	RGATCY	1 cut(s)	386
RsaI	GTAC	4 cut(s)	241, 376, 521, 533
RsaNI	GTAC	4 cut(s)	240, 375, 520, 532
SatI	GCNGC	3 cut(s)	63, 426, 550
Sau3AI	GATC	4 cut(s)	316, 337, 386, 589
Sau96I	GGNCC	6 cut(s)	29, 30, 76, 77, 327, 547
SchI	GAGTC	4 cut(s)	65, 174, 262, 301
ScrFI	CCNGG	7 cut(s)	74, 102, 130, 171, 244, 331, 359
SduI	GDGCHC	2 cut(s)	33, 80
SetI	ASST	9 cut(s)	93, 192, 227, 237, 267, 302, 412, 459, 537
SfaNI	GCATC	2 cut(s)	572, 590
SfcI	CTRYAG	1 cut(s)	295
SfoI	GGCGCC	1 cut(s)	99
SinI	GGWCC	1 cut(s)	327
Sse9I	AATT	3 cut(s)	149, 471, 483
SsiI	CCGC	4 cut(s)	16, 60, 63, 550
SspDI	GGCGCC	1 cut(s)	97
StyD4I	CCNGG	7 cut(s)	72, 100, 128, 169, 242, 329, 357
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	2 cut(s)	93, 237
TasI	AATT	3 cut(s)	149, 471, 483
TauI	GCSGC	2 cut(s)	65, 552
TfiI	GAWTC	2 cut(s)	393, 434
TseFI	GTSAC	2 cut(s)	175, 254
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	2 cut(s)	175, 254
TspDTI	ATGAA	2 cut(s)	17, 243
TspGWI	ACGGA	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	327
XapI	RAATTY	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.