Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Forward (+)

5868487 .. 5870827

Gene Structure 2341 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCTCAAAACCTTAGCCACCATCTCCACCACATCACCACTCCTCTCCACCACCACAACCACCTCCGCCACCACGGCGAAACTCTCTCTCTCCTCCCCCTTCCTCCTCTCTCTCTCCAAATTCCGCCCCAAACCCACCTCCCCTTTCCCCCAAACCCGCCGGCCCATCTCCCTCCACAGGCCCACCATGAACATCCTCAACCGCCTCGGCTTCGGGCCCAAGACCCCCGACCCGAACTCCGAGTCCGCCGCCATCGCCCAGGGCCCCGACGAGGACGTTCCGGCGCCGGGTCAGCAGCATGATCCCACGACGCTCAATCGCCAGGGTGGTGATGTCGGTACGCAGTACAGATCCGGAATCTACTTCTACACACCTGAGCAAGAGCAAGCAGCAAAAGAATCTCTGGAGAAACACCAGAAGGTTGTGAACCGACCAATTGTTACAGAAATTCTTCCTGCCAAGAAGTTCTACCGAGCAGAGGAGTACCACCAGCAGTACCTTGCCAAAGGGGGCCGCTTTGGATTTAGGCAATCTACTGAGAAAGGATGCAATGATCCAATCCGATGCTACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

191

Amino Acids

21.14

Weight (kDa)

9.59

Isoelectric Point (pI)

55.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	98 - 169	6.4e-25	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	283
AccIII	TCCGGA	1 cut(s)	353
AciI	CCGC	7 cut(s)	66, 124, 157, 202, 246, 249, 514
AclWI	GGATC	3 cut(s)	296, 345, 548
AcsI	RAATTY	2 cut(s)	119, 447
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	4 cut(s)	340, 347, 485, 497
AfiI	CCNNNNNNNGG	4 cut(s)	177, 271, 287, 478
AjnI	CCWGG	2 cut(s)	258, 321
AloI	GAACNNNNNNTCC	2 cut(s)	227, 259
AlwI	GGATC	3 cut(s)	296, 345, 548
Aor13HI	TCCGGA	1 cut(s)	353
AoxI	GGCC	5 cut(s)	161, 179, 215, 262, 511
ApaI	GGGCCC	2 cut(s)	219, 266
ApeKI	GCWGC	2 cut(s)	295, 389
ApoI	RAATTY	2 cut(s)	119, 447
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
Asp700I	GAANNNNTTC	1 cut(s)	450
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	7 cut(s)	162, 180, 215, 216, 262, 263, 511
AsuC2I	CCSGG	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	27, 341
BaeGI	GKGCMC	2 cut(s)	219, 266
BanI	GGYRCC	1 cut(s)	283
BanII	GRGCYC	2 cut(s)	219, 266
BbvI	GCAGC	2 cut(s)	307, 401
BccI	CCATC	3 cut(s)	29, 173, 260
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	2 cut(s)	260, 323
BcnI	CCSGG	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	287
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	4 cut(s)	249, 296, 390, 514
BlsI	GCNGC	4 cut(s)	250, 297, 391, 515
Bme1390I	CCNGG	3 cut(s)	260, 288, 323
BmgT120I	GGNCC	7 cut(s)	162, 180, 215, 216, 262, 263, 511
BmiI	GGNNCC	5 cut(s)	217, 264, 265, 285, 512
BmrFI	CCNGG	3 cut(s)	260, 288, 323
BmsI	GCATC	2 cut(s)	536, 554
BpmI	CTGGAG	1 cut(s)	425
Bpu10I	CCTNAGC	2 cut(s)	13, 375
BpuMI	CCSGG	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	284
BsaJI	CCNNGG	5 cut(s)	72, 205, 258, 259, 322
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 271, 287, 478
Bse118I	RCCGGY	1 cut(s)	159
Bse3DI	GCAATG	1 cut(s)	556
BseAI	TCCGGA	1 cut(s)	353
BseBI	CCWGG	2 cut(s)	260, 323
BseDI	CCNNGG	5 cut(s)	72, 205, 258, 259, 322
BseGI	GGATG	2 cut(s)	192, 551
BseLI	CCNNNNNNNGG	4 cut(s)	177, 271, 287, 478
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	366, 528
BseRI	GAGGAG	4 cut(s)	32, 82, 95, 494
BseSI	GKGCMC	2 cut(s)	219, 266
BseXI	GCAGC	2 cut(s)	307, 401
BshFI	GGCC	5 cut(s)	163, 181, 217, 264, 513
BshNI	GGYRCC	1 cut(s)	283
BsiSI	CCGG	4 cut(s)	160, 281, 287, 354
BslI	CCNNNNNNNGG	4 cut(s)	177, 271, 287, 478
BsnI	GGCC	5 cut(s)	163, 181, 217, 264, 513
Bsp120I	GGGCCC	2 cut(s)	215, 262
Bsp1286I	GDGCHC	2 cut(s)	219, 266
Bsp13I	TCCGGA	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	301, 350, 553
BspACI	CCGC	7 cut(s)	66, 124, 157, 202, 246, 249, 514
BspANI	GGCC	5 cut(s)	163, 181, 217, 264, 513
BspCNI	CTCAG	2 cut(s)	367, 529
BspEI	TCCGGA	1 cut(s)	353
BspLI	GGNNCC	5 cut(s)	217, 264, 265, 285, 512
BspPI	GGATC	3 cut(s)	296, 345, 548
BspT107I	GGYRCC	1 cut(s)	283
BsrDI	GCAATG	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	5 cut(s)	72, 205, 258, 259, 322
BssMI	GATC	3 cut(s)	301, 350, 553
BssNI	GRCGYC	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	260, 323
BstACI	GRCGYC	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	161, 387
BstDEI	CTNAG	3 cut(s)	13, 375, 537
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	192, 551
BstH2I	RGCGCY	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	3 cut(s)	304, 353, 556
BstMBI	GATC	3 cut(s)	301, 350, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 254, 292
BstNI	CCWGG	2 cut(s)	260, 323
BstSCI	CCNGG	3 cut(s)	258, 286, 321
BstSLI	GKGCMC	2 cut(s)	219, 266
BstV1I	GCAGC	2 cut(s)	307, 401
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuRI	GGCC	5 cut(s)	163, 181, 217, 264, 513
BtgI	CCRYGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	192, 551
Cac8I	GCNNGC	2 cut(s)	161, 387
CfoI	GCGC	1 cut(s)	286
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	7 cut(s)	162, 180, 215, 216, 262, 263, 511
CseI	GACGC	1 cut(s)	319
Csp6I	GTAC	4 cut(s)	339, 346, 484, 496
CviAII	CATG	2 cut(s)	187, 299
CviJI	RGCY	8 cut(s)	17, 163, 181, 210, 217, 264, 513, 573
CviKI_1	RGCY	8 cut(s)	17, 163, 181, 210, 217, 264, 513, 573
CviQI	GTAC	4 cut(s)	339, 346, 484, 496
DdeI	CTNAG	3 cut(s)	13, 375, 537
DinI	GGCGCC	1 cut(s)	285
DpnI	GATC	3 cut(s)	303, 352, 555
DpnII	GATC	3 cut(s)	301, 350, 553
EciI	GGCGGA	3 cut(s)	55, 113, 235
Eco24I	GRGCYC	2 cut(s)	219, 266
EcoO109I	RGGNCCY	2 cut(s)	262, 263
EcoRII	CCWGG	2 cut(s)	258, 321
EcoT38I	GRGCYC	2 cut(s)	219, 266
EgeI	GGCGCC	1 cut(s)	285
EheI	GGCGCC	1 cut(s)	285
FaeI	CATG	2 cut(s)	190, 302
FaiI	YATR	2 cut(s)	188, 300
FatI	CATG	2 cut(s)	186, 298
FauI	CCCGC	1 cut(s)	164
Fnu4HI	GCNGC	4 cut(s)	249, 296, 390, 514
FokI	GGATG	2 cut(s)	179, 558
FriOI	GRGCYC	2 cut(s)	219, 266
Fsp4HI	GCNGC	4 cut(s)	249, 296, 390, 514
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	4 cut(s)	249, 296, 390, 514
GsuI	CTGGAG	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	287
HaeIII	GGCC	5 cut(s)	163, 181, 217, 264, 513
HapII	CCGG	4 cut(s)	160, 281, 287, 354
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	1 cut(s)	286
Hin1I	GRCGYC	1 cut(s)	284
Hin1II	CATG	2 cut(s)	190, 302
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	3 cut(s)	242, 357, 398
HpaII	CCGG	4 cut(s)	160, 281, 287, 354
HphI	GGTGA	2 cut(s)	27, 341
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	2 cut(s)	241, 563
Hpy188III	TCNNGA	2 cut(s)	354, 404
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	2 cut(s)	272, 313
HpyAV	CCTTC	2 cut(s)	109, 412
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	1 cut(s)	549
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 254, 292
HpyF3I	CTNAG	3 cut(s)	13, 375, 537
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	284
Hsp92II	CATG	2 cut(s)	190, 302
HspAI	GCGC	1 cut(s)	284
KasI	GGCGCC	1 cut(s)	283
Kpn2I	TCCGGA	1 cut(s)	353
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
Kzo9I	GATC	3 cut(s)	301, 350, 553
Lsp1109I	GCAGC	2 cut(s)	307, 401
LweI	GCATC	2 cut(s)	536, 554
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	303, 352, 555
MboI	GATC	3 cut(s)	301, 350, 553
MboII	GAAGA	1 cut(s)	443
MfeI	CAATTG	1 cut(s)	435
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	2 cut(s)	219, 266
MluCI	AATT	3 cut(s)	119, 435, 447
Mly113I	GGCGCC	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	251
MroI	TCCGGA	1 cut(s)	353
MroNI	GCCGGC	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	450
MspI	CCGG	4 cut(s)	160, 281, 287, 354
MspR9I	CCNGG	3 cut(s)	260, 288, 323
MunI	CAATTG	1 cut(s)	435
MvaI	CCWGG	2 cut(s)	260, 323
MwoI	GCNNNNNNNGC	3 cut(s)	74, 254, 292
NaeI	GCCGGC	1 cut(s)	161
NarI	GGCGCC	1 cut(s)	284
NciI	CCSGG	1 cut(s)	288
NdeII	GATC	3 cut(s)	301, 350, 553
NgoMIV	GCCGGC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	190, 302
NlaIV	GGNNCC	5 cut(s)	217, 264, 265, 285, 512
NmeAIII	GCCGAG	1 cut(s)	186
PasI	CCCWGGG	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	161
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	357, 398
PkrI	GCNGC	4 cut(s)	250, 297, 391, 515
PleI	GAGTC	1 cut(s)	250
PluTI	GGCGCC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	258, 321
PspGI	CCWGG	2 cut(s)	258, 321
PspN4I	GGNNCC	5 cut(s)	217, 264, 265, 285, 512
PspOMI	GGGCCC	2 cut(s)	215, 262
PspPI	GGNCC	7 cut(s)	162, 180, 215, 216, 262, 263, 511
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	4 cut(s)	340, 347, 485, 497
RsaNI	GTAC	4 cut(s)	339, 346, 484, 496
SatI	GCNGC	4 cut(s)	249, 296, 390, 514
Sau3AI	GATC	3 cut(s)	301, 350, 553
Sau96I	GGNCC	7 cut(s)	162, 180, 215, 216, 262, 263, 511
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	3 cut(s)	260, 288, 323
SduI	GDGCHC	2 cut(s)	219, 266
SetI	ASST	7 cut(s)	14, 65, 140, 279, 376, 423, 501
SfaNI	GCATC	2 cut(s)	536, 554
SfoI	GGCGCC	1 cut(s)	285
Sse9I	AATT	3 cut(s)	119, 435, 447
SsiI	CCGC	7 cut(s)	66, 124, 157, 202, 246, 249, 514
SspDI	GGCGCC	1 cut(s)	283
StyD4I	CCNGG	3 cut(s)	258, 286, 321
TaiI	ACGT	1 cut(s)	279
TasI	AATT	3 cut(s)	119, 435, 447
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	2 cut(s)	251, 516
TfiI	GAWTC	2 cut(s)	357, 398
TseI	GCWGC	2 cut(s)	295, 389
TspDTI	ATGAA	1 cut(s)	203
XapI	RAATTY	2 cut(s)	119, 447
XmnI	GAANNNNTTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.