Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Reverse (-)

48410046 .. 48412856

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG351200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCTCAAAACCTTAGCCACCATCTCCACCACATCACCGCTCCTCTCCACCACCACCACCACAACCACCTCCGCCACCACGGCGAAACTCTCTCTCTCCTCCCCCTTCCTCCTCTCTCTCTCCAAATTCCGCCCCAAACCCACCTCTCCTTTCCCCCAAACCCGCCGCCCCATCTCCCTCCACAGGCCCACCATGAACATCCTCAACCGCCTCGGCTTCGGGCCCAAGACCCCCGACCCGAACTCCGAGTCCGCCGCCATCTCCCAGGGCCCCGAAGACGACGTTCCGGCGCCGGGTCAGCAGTTCTCGCAGTTCGGAGCCGGGTGCTTCTGGGGGGTAGAATTGGCATTTCAGAGAGTCCCCGGCGTCACCAAAACGGAGGTCGGGTACTCTCAGGGGCTGCTCCACAATCCCAGCTATGAAGACGTGTGTACCGGGACGACGAGTCACTCTGAGGTCGTGAGGGTTCAGTATGACCCTAAAGACTGTAGCTTTGAGACTCTGCTTGATCTCTTTTGGTCCAGGCATGATCCCACGACGCTCAATCGCCAGGGTGGTGATGTGGGTACACAGTACAGATCCGGAATCTACTTCTACACACCTGAGCAAGAGCAAGCAGCAAAAGATTCTCTGGAGAAACACCAGAAGGTCGTGAACCGACCAATTGTTACAGAAATTCTTCCTGCCAAGAAGTTCTACCGAGCAGAGGAGTACCACCAGCAGTACCTTGCCAAAGGGGGCCACTTTGGATTTAGGCAATCTACTGAGAAAGGATGCAATGATCCAATCCGATGCTACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

267

Amino Acids

29.63

Weight (kDa)

8.53

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	105 - 245	1.4e-59	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	289
AccBSI	CCGCTC	1 cut(s)	40
AccIII	TCCGGA	1 cut(s)	581
AciI	CCGC	8 cut(s)	38, 72, 130, 163, 166, 208, 252, 255
AclWI	GGATC	3 cut(s)	524, 573, 776
AcsI	RAATTY	2 cut(s)	125, 675
AcyI	GRCGYC	2 cut(s)	290, 366
AfaI	GTAC	6 cut(s)	389, 433, 568, 575, 713, 725
AfiI	CCNNNNNNNGG	3 cut(s)	183, 293, 706
AflIII	ACRYGT	1 cut(s)	426
AhdI	GACNNNNNGTC	1 cut(s)	444
AjiI	CACGTC	1 cut(s)	427
AjnI	CCWGG	3 cut(s)	264, 521, 549
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	2 cut(s)	417, 492
AluI	AGCT	2 cut(s)	417, 492
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	3 cut(s)	524, 573, 776
AlwNI	CAGNNNCTG	1 cut(s)	400
Aor13HI	TCCGGA	1 cut(s)	581
AoxI	GGCC	4 cut(s)	185, 221, 268, 739
ApaI	GGGCCC	2 cut(s)	225, 272
ApeKI	GCWGC	2 cut(s)	400, 617
ApoI	RAATTY	2 cut(s)	125, 675
ArsI	GACNNNNNNTTYG	6 cut(s)	233, 265, 366, 398, 476, 508
Asp700I	GAANNNNTTC	1 cut(s)	678
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	7 cut(s)	186, 221, 222, 268, 269, 519, 739
AsuC2I	CCSGG	4 cut(s)	294, 322, 363, 436
AsuHPI	GGTGA	3 cut(s)	27, 361, 569
AvaII	GGWCC	1 cut(s)	519
BaeGI	GKGCMC	2 cut(s)	225, 272
BaeI	ACNNNNGTAYC	2 cut(s)	415, 448
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	2 cut(s)	225, 272
BbsI	GAAGAC	2 cut(s)	282, 429
BbvI	GCAGC	2 cut(s)	387, 629
BccI	CCATC	3 cut(s)	29, 179, 266
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	3 cut(s)	266, 523, 551
BcnI	CCSGG	4 cut(s)	294, 322, 363, 436
BcoDI	GTCTC	1 cut(s)	491
BfmI	CTRYAG	1 cut(s)	487
BfoI	RGCGCY	1 cut(s)	293
BglI	GCCNNNNNGGC	1 cut(s)	80
BisI	GCNGC	4 cut(s)	166, 255, 401, 618
BlsI	GCNGC	4 cut(s)	167, 256, 402, 619
Bme1390I	CCNGG	7 cut(s)	266, 294, 322, 363, 436, 523, 551
Bme18I	GGWCC	1 cut(s)	519
BmeRI	GACNNNNNGTC	1 cut(s)	444
BmgBI	CACGTC	1 cut(s)	427
BmgT120I	GGNCC	7 cut(s)	186, 221, 222, 268, 269, 519, 739
BmiI	GGNNCC	6 cut(s)	223, 270, 271, 291, 319, 740
BmrFI	CCNGG	7 cut(s)	266, 294, 322, 363, 436, 523, 551
BmsI	GCATC	2 cut(s)	764, 782
BpiI	GAAGAC	2 cut(s)	282, 429
BpmI	CTGGAG	1 cut(s)	653
Bpu10I	CCTNAGC	2 cut(s)	13, 603
BpuMI	CCSGG	4 cut(s)	294, 322, 363, 436
BsaHI	GRCGYC	2 cut(s)	290, 366
BsaJI	CCNNGG	6 cut(s)	78, 211, 264, 265, 361, 550
BsaWI	WCCGGW	1 cut(s)	581
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 371, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 293, 706
Bse3DI	GCAATG	1 cut(s)	784
BseAI	TCCGGA	1 cut(s)	581
BseBI	CCWGG	3 cut(s)	266, 523, 551
BseDI	CCNNGG	6 cut(s)	78, 211, 264, 265, 361, 550
BseGI	GGATG	2 cut(s)	198, 779
BseLI	CCNNNNNNNGG	3 cut(s)	183, 293, 706
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	4 cut(s)	407, 444, 594, 756
BseRI	GAGGAG	4 cut(s)	32, 88, 101, 722
BseSI	GKGCMC	2 cut(s)	225, 272
BseXI	GCAGC	2 cut(s)	387, 629
BseYI	CCCAGC	1 cut(s)	413
BshFI	GGCC	4 cut(s)	187, 223, 270, 741
BshNI	GGYRCC	1 cut(s)	289
BsiSI	CCGG	6 cut(s)	287, 293, 321, 363, 435, 582
BslFI	GGGAC	2 cut(s)	344, 451
BslI	CCNNNNNNNGG	3 cut(s)	183, 293, 706
BsmAI	GTCTC	1 cut(s)	491
BsmFI	GGGAC	2 cut(s)	344, 451
BsnI	GGCC	4 cut(s)	187, 223, 270, 741
Bsp120I	GGGCCC	2 cut(s)	221, 268
Bsp1286I	GDGCHC	2 cut(s)	225, 272
Bsp13I	TCCGGA	1 cut(s)	581
Bsp143I	GATC	4 cut(s)	508, 529, 578, 781
BspACI	CCGC	8 cut(s)	38, 72, 130, 163, 166, 208, 252, 255
BspANI	GGCC	4 cut(s)	187, 223, 270, 741
BspCNI	CTCAG	4 cut(s)	406, 445, 595, 757
BspEI	TCCGGA	1 cut(s)	581
BspLI	GGNNCC	6 cut(s)	223, 270, 271, 291, 319, 740
BspPI	GGATC	3 cut(s)	524, 573, 776
BspT107I	GGYRCC	1 cut(s)	289
BsrBI	CCGCTC	1 cut(s)	40
BsrDI	GCAATG	1 cut(s)	784
BssECI	CCNNGG	6 cut(s)	78, 211, 264, 265, 361, 550
BssMI	GATC	4 cut(s)	508, 529, 578, 781
BssNI	GRCGYC	2 cut(s)	290, 366
Bst2UI	CCWGG	3 cut(s)	266, 523, 551
Bst4CI	ACNGT	2 cut(s)	488, 573
BstACI	GRCGYC	2 cut(s)	290, 366
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	5 cut(s)	13, 393, 453, 603, 765
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	198, 779
BstH2I	RGCGCY	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	4 cut(s)	511, 532, 581, 784
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	4 cut(s)	508, 529, 578, 781
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 298, 307
BstNI	CCWGG	3 cut(s)	266, 523, 551
BstSCI	CCNGG	7 cut(s)	264, 292, 320, 361, 434, 521, 549
BstSFI	CTRYAG	1 cut(s)	487
BstSLI	GKGCMC	2 cut(s)	225, 272
BstV1I	GCAGC	2 cut(s)	387, 629
BstV2I	GAAGAC	2 cut(s)	282, 429
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	4 cut(s)	187, 223, 270, 741
BtgI	CCRYGG	1 cut(s)	78
BtrI	CACGTC	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	198, 779
Cac8I	GCNNGC	1 cut(s)	615
CaiI	CAGNNNCTG	1 cut(s)	400
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	7 cut(s)	186, 221, 222, 268, 269, 519, 739
CseI	GACGC	2 cut(s)	355, 547
Csp6I	GTAC	6 cut(s)	388, 432, 567, 574, 712, 724
CviAII	CATG	2 cut(s)	193, 527
CviQI	GTAC	6 cut(s)	388, 432, 567, 574, 712, 724
DdeI	CTNAG	5 cut(s)	13, 393, 453, 603, 765
DinI	GGCGCC	1 cut(s)	291
DpnI	GATC	4 cut(s)	510, 531, 580, 783
DpnII	GATC	4 cut(s)	508, 529, 578, 781
DriI	GACNNNNNGTC	1 cut(s)	444
Eam1105I	GACNNNNNGTC	1 cut(s)	444
EciI	GGCGGA	3 cut(s)	61, 119, 241
Eco24I	GRGCYC	2 cut(s)	225, 272
Eco47I	GGWCC	1 cut(s)	519
EcoO109I	RGGNCCY	2 cut(s)	268, 269
EcoRII	CCWGG	3 cut(s)	264, 521, 549
EcoT38I	GRGCYC	2 cut(s)	225, 272
EgeI	GGCGCC	1 cut(s)	291
EheI	GGCGCC	1 cut(s)	291
FaeI	CATG	2 cut(s)	196, 530
FaiI	YATR	4 cut(s)	194, 420, 474, 528
FaqI	GGGAC	2 cut(s)	344, 451
FatI	CATG	2 cut(s)	192, 526
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	4 cut(s)	166, 255, 401, 618
FokI	GGATG	2 cut(s)	185, 786
FriOI	GRGCYC	2 cut(s)	225, 272
Fsp4HI	GCNGC	4 cut(s)	166, 255, 401, 618
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	4 cut(s)	166, 255, 401, 618
GsaI	CCCAGC	1 cut(s)	417
GsuI	CTGGAG	1 cut(s)	653
HaeII	RGCGCY	1 cut(s)	293
HaeIII	GGCC	4 cut(s)	187, 223, 270, 741
HapII	CCGG	6 cut(s)	287, 293, 321, 363, 435, 582
HgaI	GACGC	2 cut(s)	355, 547
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	2 cut(s)	290, 366
Hin1II	CATG	2 cut(s)	196, 530
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	6 cut(s)	248, 357, 445, 499, 585, 626
HpaII	CCGG	6 cut(s)	287, 293, 321, 363, 435, 582
HphI	GGTGA	3 cut(s)	27, 361, 569
Hpy166II	GTNNAC	3 cut(s)	432, 569, 655
Hpy188I	TCNGA	5 cut(s)	247, 317, 354, 454, 791
Hpy188III	TCNNGA	4 cut(s)	460, 582, 632, 652
Hpy8I	GTNNAC	3 cut(s)	432, 569, 655
Hpy99I	CGWCG	3 cut(s)	284, 445, 541
HpyAV	CCTTC	2 cut(s)	115, 640
HpyCH4III	ACNGT	2 cut(s)	488, 573
HpyCH4IV	ACGT	2 cut(s)	282, 426
HpyCH4V	TGCA	1 cut(s)	777
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 298, 307
HpyF3I	CTNAG	5 cut(s)	13, 393, 453, 603, 765
HpySE526I	ACGT	2 cut(s)	282, 426
Hsp92I	GRCGYC	2 cut(s)	290, 366
Hsp92II	CATG	2 cut(s)	196, 530
HspAI	GCGC	1 cut(s)	290
KasI	GGCGCC	1 cut(s)	289
Kpn2I	TCCGGA	1 cut(s)	581
Kzo9I	GATC	4 cut(s)	508, 529, 578, 781
LmnI	GCTCC	3 cut(s)	45, 317, 408
Lsp1109I	GCAGC	2 cut(s)	387, 629
LweI	GCATC	2 cut(s)	764, 782
MaeII	ACGT	2 cut(s)	282, 426
MaeIII	GTNAC	3 cut(s)	367, 446, 667
MalI	GATC	4 cut(s)	510, 531, 580, 783
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	4 cut(s)	508, 529, 578, 781
MboII	GAAGA	3 cut(s)	287, 434, 671
MfeI	CAATTG	1 cut(s)	663
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	2 cut(s)	225, 272
MluCI	AATT	4 cut(s)	125, 341, 663, 675
Mly113I	GGCGCC	1 cut(s)	290
MlyI	GAGTC	4 cut(s)	257, 366, 454, 493
MroI	TCCGGA	1 cut(s)	581
MroXI	GAANNNNTTC	1 cut(s)	678
MspI	CCGG	6 cut(s)	287, 293, 321, 363, 435, 582
MspR9I	CCNGG	7 cut(s)	266, 294, 322, 363, 436, 523, 551
MunI	CAATTG	1 cut(s)	663
MvaI	CCWGG	3 cut(s)	266, 523, 551
MwoI	GCNNNNNNNGC	3 cut(s)	80, 298, 307
NarI	GGCGCC	1 cut(s)	290
NciI	CCSGG	4 cut(s)	294, 322, 363, 436
NdeII	GATC	4 cut(s)	508, 529, 578, 781
NlaIII	CATG	2 cut(s)	196, 530
NlaIV	GGNNCC	6 cut(s)	223, 270, 271, 291, 319, 740
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	2 cut(s)	367, 446
PasI	CCCWGGG	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	2 cut(s)	585, 626
PkrI	GCNGC	4 cut(s)	167, 256, 402, 619
PleI	GAGTC	4 cut(s)	256, 365, 453, 493
PluTI	GGCGCC	1 cut(s)	293
PpsI	GAGTC	4 cut(s)	256, 365, 453, 493
Psp6I	CCWGG	3 cut(s)	264, 521, 549
PspFI	CCCAGC	1 cut(s)	413
PspGI	CCWGG	3 cut(s)	264, 521, 549
PspN4I	GGNNCC	6 cut(s)	223, 270, 271, 291, 319, 740
PspOMI	GGGCCC	2 cut(s)	221, 268
PspPI	GGNCC	7 cut(s)	186, 221, 222, 268, 269, 519, 739
PstNI	CAGNNNCTG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	578
RsaI	GTAC	6 cut(s)	389, 433, 568, 575, 713, 725
RsaNI	GTAC	6 cut(s)	388, 432, 567, 574, 712, 724
SatI	GCNGC	4 cut(s)	166, 255, 401, 618
Sau3AI	GATC	4 cut(s)	508, 529, 578, 781
Sau96I	GGNCC	7 cut(s)	186, 221, 222, 268, 269, 519, 739
SchI	GAGTC	4 cut(s)	257, 366, 454, 493
ScrFI	CCNGG	7 cut(s)	266, 294, 322, 363, 436, 523, 551
SduI	GDGCHC	2 cut(s)	225, 272
SfaNI	GCATC	2 cut(s)	764, 782
SfcI	CTRYAG	1 cut(s)	487
SfoI	GGCGCC	1 cut(s)	291
SinI	GGWCC	1 cut(s)	519
Sse9I	AATT	4 cut(s)	125, 341, 663, 675
SsiI	CCGC	8 cut(s)	38, 72, 130, 163, 166, 208, 252, 255
SspDI	GGCGCC	1 cut(s)	289
StyD4I	CCNGG	7 cut(s)	264, 292, 320, 361, 434, 521, 549
TaaI	ACNGT	2 cut(s)	488, 573
TaiI	ACGT	2 cut(s)	285, 429
TasI	AATT	4 cut(s)	125, 341, 663, 675
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	2 cut(s)	168, 257
TfiI	GAWTC	2 cut(s)	585, 626
TseFI	GTSAC	2 cut(s)	367, 446
TseI	GCWGC	2 cut(s)	400, 617
Tsp45I	GTSAC	2 cut(s)	367, 446
TspDTI	ATGAA	2 cut(s)	209, 435
TspGWI	ACGGA	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	519
XapI	RAATTY	2 cut(s)	125, 675
XmnI	GAANNNNTTC	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.