Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Reverse (-)

20169085 .. 20171713

Gene Structure 2629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGATTCGCTACATCCCAATACGAAACCTCAATAGTACCTCATCCCTTTCACTCGACTCAGCACCAACCCAAAAACATAAAAAAAGCCCAAATCCGCCACGTCACCACCCCCAAAAAATGCTCAAAACCTTAGCCACCTTCTCCACCACCACACCACTCCTCTCCACCACCACCGCCACCACCACGAAGCTCTCTCTCTCCTCCTCCTTTTTCTCTCTCTCCAAATTCCAACCCAAACCCACCTCCCCTTTCCCCCAAACCCGCCGACCCATCTCCCTCCGCACCCCCACCATGAACATCCTCAACCGCCTCGGGTTCGGACCCAAGACCCCCGACCCGAACTCCGAGTCCGCCGCCATCGCGCAGGGCCCCGACGACGACGTCCCGGCGCCGGGTCAGCAGTTCGCGCAGTTCGGAGCCGGGTGCTTCTGGGGGGTAGAATTGGCATTTCAGAGAGTCCCCGGCGTCACCAAAACGGAGGTTGGGTATTCTCAGGGCTTGCTGCATAATCCGAGCTATGAGGACGTGTGTAGTGGGACGACGGGTCACTCTGAGGTCGTGAGGGTTCAGTATGACCCTAAAGACTGTAGCTTTGAGGCTCTGCTTGATATGTTTTGGTCCAGGCATGATCCCACCACGCTCAATCGTCAGGGTGGTGATGTGGGAACGCAATACAGATCTGGAATCTACTTCTACACACCTGAGCAAGAGCAGGCAGCAAAAGAATCTATGGAGAAGCACCAGAAGGTCGTGAACCGGCCGATTGTTACAGAAATACTTCCTGCCAAGAAGTTCTACAGAGCAGAGGAGTACCACCAGCAGTACCTTGCCAAAGGAGGCCGCTTTGGTTTTAGGCAATCTGCTGAGAAAGGATGCAATGATCCAATCCGATGCTACGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

301

Amino Acids

33.44

Weight (kDa)

9.28

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	136 - 278	1.4e-60	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	380
AatII	GACGTC	1 cut(s)	384
AccB1I	GGYRCC	1 cut(s)	388
AccII	CGCG	2 cut(s)	362, 407
AciI	CCGC	8 cut(s)	95, 174, 262, 280, 307, 351, 354, 841
AclWI	GGATC	2 cut(s)	623, 875
AcoI	YGGCCR	1 cut(s)	758
AcsI	RAATTY	1 cut(s)	224
AcyI	GRCGYC	3 cut(s)	381, 389, 465
AfaI	GTAC	3 cut(s)	37, 812, 824
AfiI	CCNNNNNNNGG	2 cut(s)	391, 392
AflIII	ACRYGT	1 cut(s)	525
AhdI	GACNNNNNGTC	1 cut(s)	543
AjiI	CACGTC	2 cut(s)	101, 526
AjnI	CCWGG	1 cut(s)	620
AloI	GAACNNNNNNTCC	2 cut(s)	332, 364
AluBI	AGCT	3 cut(s)	190, 516, 591
AluI	AGCT	3 cut(s)	190, 516, 591
AlwI	GGATC	2 cut(s)	623, 875
Ama87I	CYCGRG	1 cut(s)	311
AoxI	GGCC	3 cut(s)	367, 758, 838
ApaI	GGGCCC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	502, 716
ApoI	RAATTY	1 cut(s)	224
ArsI	GACNNNNNNTTYG	4 cut(s)	332, 364, 575, 607
Asp700I	GAANNNNTTC	1 cut(s)	777
AspLEI	GCGC	3 cut(s)	364, 391, 409
AspS9I	GGNCC	4 cut(s)	320, 367, 368, 618
AsuC2I	CCSGG	4 cut(s)	386, 393, 421, 462
AsuHPI	GGTGA	3 cut(s)	95, 460, 668
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	2 cut(s)	320, 618
BaeGI	GKGCMC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	489, 728
BccI	CCATC	2 cut(s)	278, 365
BciT130I	CCWGG	1 cut(s)	622
BcnI	CCSGG	4 cut(s)	386, 393, 421, 462
BfmI	CTRYAG	2 cut(s)	586, 796
BfoI	RGCGCY	1 cut(s)	392
BglII	AGATCT	1 cut(s)	677
BisI	GCNGC	4 cut(s)	354, 503, 717, 841
BlsI	GCNGC	4 cut(s)	355, 504, 718, 842
Bme1390I	CCNGG	5 cut(s)	386, 393, 421, 462, 622
Bme18I	GGWCC	2 cut(s)	320, 618
BmeRI	GACNNNNNGTC	1 cut(s)	543
BmeT110I	CYCGRG	1 cut(s)	311
BmgBI	CACGTC	2 cut(s)	101, 526
BmgT120I	GGNCC	4 cut(s)	320, 367, 368, 618
BmiI	GGNNCC	5 cut(s)	322, 369, 370, 390, 418
BmrFI	CCNGG	5 cut(s)	386, 393, 421, 462, 622
BmsI	GCATC	2 cut(s)	863, 881
Bpu10I	CCTNAGC	2 cut(s)	130, 702
BpuMI	CCSGG	4 cut(s)	386, 393, 421, 462
BsaHI	GRCGYC	3 cut(s)	381, 389, 465
BsaJI	CCNNGG	2 cut(s)	310, 460
BsaXI	ACNNNNNCTCC	4 cut(s)	326, 356, 470, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 392
Bse118I	RCCGGY	1 cut(s)	756
Bse3DI	GCAATG	1 cut(s)	883
BseBI	CCWGG	1 cut(s)	622
BseDI	CCNNGG	2 cut(s)	310, 460
BseGI	GGATG	4 cut(s)	12, 41, 297, 878
BseLI	CCNNNNNNNGG	2 cut(s)	391, 392
BseMI	GCAATG	1 cut(s)	883
BseMII	CTCAG	5 cut(s)	72, 506, 543, 693, 855
BseRI	GAGGAG	4 cut(s)	149, 190, 193, 821
BseSI	GKGCMC	1 cut(s)	371
BseX3I	CGGCCG	1 cut(s)	758
BseXI	GCAGC	2 cut(s)	489, 728
Bsh1236I	CGCG	2 cut(s)	362, 407
Bsh1285I	CGRYCG	1 cut(s)	761
BshFI	GGCC	3 cut(s)	369, 760, 840
BshNI	GGYRCC	1 cut(s)	388
BsiEI	CGRYCG	1 cut(s)	761
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	5 cut(s)	386, 392, 420, 462, 757
BslFI	GGGAC	3 cut(s)	368, 443, 550
BslI	CCNNNNNNNGG	2 cut(s)	391, 392
BsmFI	GGGAC	3 cut(s)	368, 443, 550
BsnI	GGCC	3 cut(s)	369, 760, 840
BsoBI	CYCGRG	1 cut(s)	311
Bsp120I	GGGCCC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	3 cut(s)	628, 677, 880
BspACI	CCGC	8 cut(s)	95, 174, 262, 280, 307, 351, 354, 841
BspANI	GGCC	3 cut(s)	369, 760, 840
BspCNI	CTCAG	5 cut(s)	71, 505, 544, 694, 856
BspFNI	CGCG	2 cut(s)	362, 407
BspLI	GGNNCC	5 cut(s)	322, 369, 370, 390, 418
BspPI	GGATC	2 cut(s)	623, 875
BspT107I	GGYRCC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	883
BsrFI	RCCGGY	1 cut(s)	756
BssAI	RCCGGY	1 cut(s)	756
BssECI	CCNNGG	2 cut(s)	310, 460
BssMI	GATC	3 cut(s)	628, 677, 880
BssNI	GRCGYC	3 cut(s)	381, 389, 465
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	1 cut(s)	587
BstACI	GRCGYC	3 cut(s)	381, 389, 465
BstC8I	GCNNGC	2 cut(s)	500, 714
BstDEI	CTNAG	6 cut(s)	58, 130, 492, 552, 702, 864
BstF5I	GGATG	4 cut(s)	12, 41, 297, 878
BstFNI	CGCG	2 cut(s)	362, 407
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	3 cut(s)	364, 391, 409
BstKTI	GATC	3 cut(s)	631, 680, 883
BstMBI	GATC	3 cut(s)	628, 677, 880
BstMCI	CGRYCG	1 cut(s)	761
BstMWI	GCNNNNNNNGC	3 cut(s)	359, 397, 406
BstNI	CCWGG	1 cut(s)	622
BstSCI	CCNGG	5 cut(s)	384, 391, 419, 460, 620
BstSFI	CTRYAG	2 cut(s)	586, 796
BstSLI	GKGCMC	1 cut(s)	371
BstUI	CGCG	2 cut(s)	362, 407
BstV1I	GCAGC	2 cut(s)	489, 728
BstX2I	RGATCY	1 cut(s)	677
BstYI	RGATCY	1 cut(s)	677
BstZI	CGGCCG	1 cut(s)	758
BsuRI	GGCC	3 cut(s)	369, 760, 840
BtgZI	GCGATG	1 cut(s)	343
BtrI	CACGTC	2 cut(s)	101, 526
BtsCI	GGATG	4 cut(s)	12, 41, 297, 878
Cac8I	GCNNGC	2 cut(s)	500, 714
CfoI	GCGC	3 cut(s)	364, 391, 409
Cfr10I	RCCGGY	1 cut(s)	756
Cfr13I	GGNCC	4 cut(s)	320, 367, 368, 618
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	3 cut(s)	36, 811, 823
CviAII	CATG	2 cut(s)	292, 626
CviQI	GTAC	3 cut(s)	36, 811, 823
DdeI	CTNAG	6 cut(s)	58, 130, 492, 552, 702, 864
DinI	GGCGCC	1 cut(s)	390
DpnI	GATC	3 cut(s)	630, 679, 882
DpnII	GATC	3 cut(s)	628, 677, 880
DrdI	GACNNNNNNGTC	1 cut(s)	380
DriI	GACNNNNNGTC	1 cut(s)	543
DseDI	GACNNNNNNGTC	1 cut(s)	380
EaeI	YGGCCR	1 cut(s)	758
EagI	CGGCCG	1 cut(s)	758
Eam1105I	GACNNNNNGTC	1 cut(s)	543
EciI	GGCGGA	2 cut(s)	84, 340
EclXI	CGGCCG	1 cut(s)	758
Eco24I	GRGCYC	1 cut(s)	371
Eco47I	GGWCC	2 cut(s)	320, 618
Eco52I	CGGCCG	1 cut(s)	758
Eco88I	CYCGRG	1 cut(s)	311
EcoO109I	RGGNCCY	2 cut(s)	367, 368
EcoRII	CCWGG	1 cut(s)	620
EcoT38I	GRGCYC	1 cut(s)	371
EgeI	GGCGCC	1 cut(s)	390
EheI	GGCGCC	1 cut(s)	390
FaeI	CATG	2 cut(s)	295, 629
FaiI	YATR	8 cut(s)	78, 293, 507, 519, 573, 611, 627, 731
FaqI	GGGAC	3 cut(s)	368, 443, 550
FatI	CATG	2 cut(s)	291, 625
FauI	CCCGC	1 cut(s)	269
Fnu4HI	GCNGC	4 cut(s)	354, 503, 717, 841
FokI	GGATG	3 cut(s)	28, 284, 885
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	4 cut(s)	354, 503, 717, 841
GlaI	GCGC	3 cut(s)	363, 390, 408
GluI	GCNGC	4 cut(s)	354, 503, 717, 841
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	369, 760, 840
HapII	CCGG	5 cut(s)	386, 392, 420, 462, 757
HgaI	GACGC	1 cut(s)	454
HhaI	GCGC	3 cut(s)	364, 391, 409
Hin1I	GRCGYC	3 cut(s)	381, 389, 465
Hin1II	CATG	2 cut(s)	295, 629
Hin6I	GCGC	3 cut(s)	362, 389, 407
HinP1I	GCGC	3 cut(s)	362, 389, 407
HinfI	GANTC	6 cut(s)	4, 56, 347, 456, 684, 725
HpaII	CCGG	5 cut(s)	386, 392, 420, 462, 757
HphI	GGTGA	3 cut(s)	95, 460, 668
Hpy166II	GTNNAC	1 cut(s)	754
Hpy188I	TCNGA	7 cut(s)	320, 346, 416, 453, 513, 553, 890
Hpy188III	TCNNGA	3 cut(s)	559, 681, 751
Hpy8I	GTNNAC	1 cut(s)	754
Hpy99I	CGWCG	4 cut(s)	377, 380, 383, 544
HpyAV	CCTTC	2 cut(s)	148, 739
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4IV	ACGT	3 cut(s)	100, 381, 525
HpyCH4V	TGCA	2 cut(s)	505, 876
HpyF10VI	GCNNNNNNNGC	3 cut(s)	359, 397, 406
HpyF3I	CTNAG	6 cut(s)	58, 130, 492, 552, 702, 864
HpySE526I	ACGT	3 cut(s)	100, 381, 525
Hsp92I	GRCGYC	3 cut(s)	381, 389, 465
Hsp92II	CATG	2 cut(s)	295, 629
HspAI	GCGC	3 cut(s)	362, 389, 407
KasI	GGCGCC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	628, 677, 880
LmnI	GCTCC	1 cut(s)	416
Lsp1109I	GCAGC	2 cut(s)	489, 728
LweI	GCATC	2 cut(s)	863, 881
MaeII	ACGT	3 cut(s)	100, 381, 525
MaeIII	GTNAC	4 cut(s)	101, 466, 545, 766
MalI	GATC	3 cut(s)	630, 679, 882
MboI	GATC	3 cut(s)	628, 677, 880
MflI	RGATCY	1 cut(s)	677
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	2 cut(s)	224, 440
Mly113I	GGCGCC	1 cut(s)	389
MlyI	GAGTC	3 cut(s)	50, 356, 465
MmeI	TCCRAC	1 cut(s)	253
MroXI	GAANNNNTTC	1 cut(s)	777
MspI	CCGG	5 cut(s)	386, 392, 420, 462, 757
MspR9I	CCNGG	5 cut(s)	386, 393, 421, 462, 622
MvaI	CCWGG	1 cut(s)	622
MvnI	CGCG	2 cut(s)	362, 407
MwoI	GCNNNNNNNGC	3 cut(s)	359, 397, 406
NarI	GGCGCC	1 cut(s)	389
NciI	CCSGG	4 cut(s)	386, 393, 421, 462
NdeII	GATC	3 cut(s)	628, 677, 880
NlaIII	CATG	2 cut(s)	295, 629
NlaIV	GGNNCC	5 cut(s)	322, 369, 370, 390, 418
NmuCI	GTSAC	3 cut(s)	101, 466, 545
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	3 cut(s)	4, 684, 725
PflFI	GACNNNGTC	1 cut(s)	380
PkrI	GCNGC	4 cut(s)	355, 504, 718, 842
PleI	GAGTC	3 cut(s)	50, 355, 464
PluTI	GGCGCC	1 cut(s)	392
PpsI	GAGTC	3 cut(s)	50, 355, 464
Psp6I	CCWGG	1 cut(s)	620
PspGI	CCWGG	1 cut(s)	620
PspN4I	GGNNCC	5 cut(s)	322, 369, 370, 390, 418
PspOMI	GGGCCC	1 cut(s)	367
PspPI	GGNCC	4 cut(s)	320, 367, 368, 618
PsuI	RGATCY	1 cut(s)	677
PsyI	GACNNNGTC	1 cut(s)	380
RsaI	GTAC	3 cut(s)	37, 812, 824
RsaNI	GTAC	3 cut(s)	36, 811, 823
SatI	GCNGC	4 cut(s)	354, 503, 717, 841
Sau3AI	GATC	3 cut(s)	628, 677, 880
Sau96I	GGNCC	4 cut(s)	320, 367, 368, 618
SchI	GAGTC	3 cut(s)	50, 356, 465
ScrFI	CCNGG	5 cut(s)	386, 393, 421, 462, 622
SduI	GDGCHC	1 cut(s)	371
SfaNI	GCATC	2 cut(s)	863, 881
SfcI	CTRYAG	2 cut(s)	586, 796
SfoI	GGCGCC	1 cut(s)	390
SinI	GGWCC	2 cut(s)	320, 618
Sse9I	AATT	2 cut(s)	224, 440
SsiI	CCGC	8 cut(s)	95, 174, 262, 280, 307, 351, 354, 841
SspDI	GGCGCC	1 cut(s)	388
StyD4I	CCNGG	5 cut(s)	384, 391, 419, 460, 620
TaaI	ACNGT	1 cut(s)	587
TaiI	ACGT	3 cut(s)	103, 384, 528
TaqI	TCGA	1 cut(s)	54
TasI	AATT	2 cut(s)	224, 440
TauI	GCSGC	2 cut(s)	356, 843
TfiI	GAWTC	3 cut(s)	4, 684, 725
TseFI	GTSAC	3 cut(s)	101, 466, 545
TseI	GCWGC	2 cut(s)	502, 716
Tsp45I	GTSAC	3 cut(s)	101, 466, 545
TspDTI	ATGAA	1 cut(s)	308
TspGWI	ACGGA	1 cut(s)	491
Tth111I	GACNNNGTC	1 cut(s)	380
VpaK11BI	GGWCC	2 cut(s)	320, 618
XapI	RAATTY	1 cut(s)	224
XmnI	GAANNNNTTC	1 cut(s)	777
ZraI	GACGTC	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.