RchiOBHm_Chr1g0373491

Peptide methionine sulfoxide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0011797
Physical Location & Seq
Reverse (-)
61697726 .. 61700400
2675 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59735

Sequence Viewer

Length: 801 bp
ATGCTCAAAACCTTAGCCACCATCTCCACCACATCACCACTCCTCTCCACCACCACAACCACCTCCGCCACCACGGCGAAACTCTCTCTCTCCTCCCCCTCCTTCCTCCTCTCTCTCTCCAAATTCCGCCCCAAACCCACCTCCCCTTTCCCCCAAACCCGCCGCCCCATCTCCCTCCACAGGCCCACCATGAACATCCTCAACCGCCTCGGCTTCGGGCCCAAGACCCCCGACCCGAACTCCGAGTCCGCCGCCATCGCCCAGGGCCCCGACGACGACGTTCCGGCGCCGGGTCAGCAGTTCGCGCAGTTCGGAGCCGGGTGCTTCTGGGGGGTAGAATTGGCATTTCAGAGAGTCCCCGGCGTCACCAAAACGGAGGTCGGCTACTCTCAGGGGTTGCTCCACAATCCCAGCTATGAAGACGTGTGTACCGGGACGACGAGTCACTCTGAGGTCGTGAGGGTTCAGTATGACCCTAAAGACTGTAGCTTTGAGACTCTGCTTGATCTCTTTTGGTCCAGGCATGATCCCACGACGCTCAATCGCCAGGGCGGTGATGTGGGTACGCAGTACAGATCCGGAATCTACTTCTACACACCTGAGCAAGAGCAAGCAGCAAAAGAATCTCTCGAGAAACACCAGAAGGTCGTGAACCGACCAATTGTTACAGAAATTCTTCCTGCCAAGAAGTTCTACCGAGCAGAGGAGTACCACCAGCAGTACCTTGCCAAAGGGGGCCGCTTTGGATTTAGGCAATCTACTGAGAAGGGATGCAATGATCCAATCCGATGCTATGGCTAA

Protein Analysis

266

Amino Acids

29.5

Weight (kDa)

8.74

Isoelectric Point (pI)

47.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 102 - 244 5e-60 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011797)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca FvH4_7g26800
malus_domestica MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica Prupe.2G271200_v2.0.a1
pyrus_communis pycom01g18690 pycom07g22120
rosa_chinensis RchiOBHm_Chr1g0373491
rosa_laevigata RLG00000026822
rosa_roxburghii Rroxscaffold_4G00284210
rosa_rugosa Rorug01G0377600
rosa_samantha Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana Rw1G034840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 286
AccII CGCG 1 cut(s) 305
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 9 cut(s) 66, 127, 160, 163, 205, 249, 252, 552, 739
AclWI GGATC 3 cut(s) 521, 570, 773
AcsI RAATTY 2 cut(s) 122, 672
AcyI GRCGYC 2 cut(s) 287, 363
AfaI GTAC 5 cut(s) 430, 565, 572, 710, 722
AfiI CCNNNNNNNGG 3 cut(s) 180, 290, 703
AflIII ACRYGT 1 cut(s) 423
AhdI GACNNNNNGTC 1 cut(s) 441
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 3 cut(s) 261, 518, 546
AloI GAACNNNNNNTCC 2 cut(s) 230, 262
AluBI AGCT 2 cut(s) 414, 489
AluI AGCT 2 cut(s) 414, 489
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 3 cut(s) 521, 570, 773
Ama87I CYCGRG 1 cut(s) 629
Aor13HI TCCGGA 1 cut(s) 578
AoxI GGCC 4 cut(s) 182, 218, 265, 736
ApaI GGGCCC 2 cut(s) 222, 269
ApeKI GCWGC 1 cut(s) 614
ApoI RAATTY 2 cut(s) 122, 672
ArsI GACNNNNNNTTYG 6 cut(s) 230, 262, 363, 395, 473, 505
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 2 cut(s) 289, 307
AspS9I GGNCC 7 cut(s) 183, 218, 219, 265, 266, 516, 736
AsuC2I CCSGG 4 cut(s) 291, 319, 360, 433
AsuHPI GGTGA 3 cut(s) 27, 358, 566
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 1 cut(s) 516
BaeGI GKGCMC 2 cut(s) 222, 269
BaeI ACNNNNGTAYC 2 cut(s) 412, 445
BanI GGYRCC 1 cut(s) 286
BanII GRGCYC 2 cut(s) 222, 269
BbsI GAAGAC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 626
BccI CCATC 3 cut(s) 29, 176, 263
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 3 cut(s) 263, 520, 548
BcnI CCSGG 4 cut(s) 291, 319, 360, 433
BcoDI GTCTC 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 484
BfoI RGCGCY 1 cut(s) 290
BglI GCCNNNNNGGC 1 cut(s) 74
BisI GCNGC 4 cut(s) 163, 252, 615, 739
BlsI GCNGC 4 cut(s) 164, 253, 616, 740
Bme1390I CCNGG 7 cut(s) 263, 291, 319, 360, 433, 520, 548
Bme18I GGWCC 1 cut(s) 516
BmeRI GACNNNNNGTC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 629
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 7 cut(s) 183, 218, 219, 265, 266, 516, 736
BmiI GGNNCC 6 cut(s) 220, 267, 268, 288, 316, 737
BmrFI CCNGG 7 cut(s) 263, 291, 319, 360, 433, 520, 548
BmsI GCATC 2 cut(s) 761, 779
BpiI GAAGAC 1 cut(s) 426
Bpu10I CCTNAGC 2 cut(s) 13, 600
BpuMI CCSGG 4 cut(s) 291, 319, 360, 433
BsaHI GRCGYC 2 cut(s) 287, 363
BsaJI CCNNGG 6 cut(s) 72, 208, 261, 262, 358, 547
BsaWI WCCGGW 1 cut(s) 578
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 3 cut(s) 180, 290, 703
Bse3DI GCAATG 1 cut(s) 781
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 3 cut(s) 263, 520, 548
BseDI CCNNGG 6 cut(s) 72, 208, 261, 262, 358, 547
BseGI GGATG 2 cut(s) 195, 776
BseLI CCNNNNNNNGG 3 cut(s) 180, 290, 703
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 4 cut(s) 404, 441, 591, 753
BseRI GAGGAG 4 cut(s) 32, 82, 98, 719
BseSI GKGCMC 2 cut(s) 222, 269
BseXI GCAGC 1 cut(s) 626
BseYI CCCAGC 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 305
BshFI GGCC 4 cut(s) 184, 220, 267, 738
BshNI GGYRCC 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 6 cut(s) 284, 290, 318, 360, 432, 579
BslFI GGGAC 2 cut(s) 341, 448
BslI CCNNNNNNNGG 3 cut(s) 180, 290, 703
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 2 cut(s) 341, 448
BsnI GGCC 4 cut(s) 184, 220, 267, 738
BsoBI CYCGRG 1 cut(s) 629
Bsp120I GGGCCC 2 cut(s) 218, 265
Bsp1286I GDGCHC 2 cut(s) 222, 269
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 4 cut(s) 505, 526, 575, 778
BspACI CCGC 9 cut(s) 66, 127, 160, 163, 205, 249, 252, 552, 739
BspANI GGCC 4 cut(s) 184, 220, 267, 738
BspCNI CTCAG 4 cut(s) 403, 442, 592, 754
BspEI TCCGGA 1 cut(s) 578
BspFNI CGCG 1 cut(s) 305
BspLI GGNNCC 6 cut(s) 220, 267, 268, 288, 316, 737
BspPI GGATC 3 cut(s) 521, 570, 773
BspT107I GGYRCC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 781
BssECI CCNNGG 6 cut(s) 72, 208, 261, 262, 358, 547
BssMI GATC 4 cut(s) 505, 526, 575, 778
BssNI GRCGYC 2 cut(s) 287, 363
Bst2UI CCWGG 3 cut(s) 263, 520, 548
Bst4CI ACNGT 1 cut(s) 485
BstACI GRCGYC 2 cut(s) 287, 363
BstC8I GCNNGC 1 cut(s) 612
BstDEI CTNAG 5 cut(s) 13, 390, 450, 600, 762
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 195, 776
BstFNI CGCG 1 cut(s) 305
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 2 cut(s) 289, 307
BstKTI GATC 4 cut(s) 508, 529, 578, 781
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 4 cut(s) 505, 526, 575, 778
BstMWI GCNNNNNNNGC 4 cut(s) 74, 257, 295, 304
BstNI CCWGG 3 cut(s) 263, 520, 548
BstSCI CCNGG 7 cut(s) 261, 289, 317, 358, 431, 518, 546
BstSFI CTRYAG 1 cut(s) 484
BstSLI GKGCMC 2 cut(s) 222, 269
BstUI CGCG 1 cut(s) 305
BstV1I GCAGC 1 cut(s) 626
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 1 cut(s) 575
BstYI RGATCY 1 cut(s) 575
BsuRI GGCC 4 cut(s) 184, 220, 267, 738
BtgI CCRYGG 1 cut(s) 72
BtgZI GCGATG 1 cut(s) 241
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 2 cut(s) 195, 776
Cac8I GCNNGC 1 cut(s) 612
CfoI GCGC 2 cut(s) 289, 307
Cfr13I GGNCC 7 cut(s) 183, 218, 219, 265, 266, 516, 736
CseI GACGC 2 cut(s) 352, 544
Csp6I GTAC 5 cut(s) 429, 564, 571, 709, 721
CviAII CATG 2 cut(s) 190, 524
CviQI GTAC 5 cut(s) 429, 564, 571, 709, 721
DdeI CTNAG 5 cut(s) 13, 390, 450, 600, 762
DinI GGCGCC 1 cut(s) 288
DpnI GATC 4 cut(s) 507, 528, 577, 780
DpnII GATC 4 cut(s) 505, 526, 575, 778
DriI GACNNNNNGTC 1 cut(s) 441
Eam1105I GACNNNNNGTC 1 cut(s) 441
EciI GGCGGA 3 cut(s) 55, 116, 238
Eco24I GRGCYC 2 cut(s) 222, 269
Eco47I GGWCC 1 cut(s) 516
Eco88I CYCGRG 1 cut(s) 629
EcoO109I RGGNCCY 2 cut(s) 265, 266
EcoRII CCWGG 3 cut(s) 261, 518, 546
EcoT38I GRGCYC 2 cut(s) 222, 269
EgeI GGCGCC 1 cut(s) 288
EheI GGCGCC 1 cut(s) 288
FaeI CATG 2 cut(s) 193, 527
FaiI YATR 5 cut(s) 191, 417, 471, 525, 795
FaqI GGGAC 2 cut(s) 341, 448
FatI CATG 2 cut(s) 189, 523
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 4 cut(s) 163, 252, 615, 739
FokI GGATG 2 cut(s) 182, 783
FriOI GRGCYC 2 cut(s) 222, 269
Fsp4HI GCNGC 4 cut(s) 163, 252, 615, 739
GlaI GCGC 2 cut(s) 288, 306
GluI GCNGC 4 cut(s) 163, 252, 615, 739
GsaI CCCAGC 1 cut(s) 414
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 4 cut(s) 184, 220, 267, 738
HapII CCGG 6 cut(s) 284, 290, 318, 360, 432, 579
HgaI GACGC 2 cut(s) 352, 544
HhaI GCGC 2 cut(s) 289, 307
Hin1I GRCGYC 2 cut(s) 287, 363
Hin1II CATG 2 cut(s) 193, 527
Hin6I GCGC 2 cut(s) 287, 305
HinP1I GCGC 2 cut(s) 287, 305
HinfI GANTC 6 cut(s) 245, 354, 442, 496, 582, 623
HpaII CCGG 6 cut(s) 284, 290, 318, 360, 432, 579
HphI GGTGA 3 cut(s) 27, 358, 566
Hpy166II GTNNAC 2 cut(s) 429, 652
Hpy188I TCNGA 5 cut(s) 244, 314, 351, 451, 788
Hpy188III TCNNGA 5 cut(s) 457, 579, 629, 631, 649
Hpy8I GTNNAC 2 cut(s) 429, 652
Hpy99I CGWCG 5 cut(s) 275, 278, 281, 442, 538
HpyAV CCTTC 3 cut(s) 112, 637, 760
HpyCH4III ACNGT 1 cut(s) 485
HpyCH4IV ACGT 2 cut(s) 279, 423
HpyCH4V TGCA 1 cut(s) 774
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 257, 295, 304
HpyF3I CTNAG 5 cut(s) 13, 390, 450, 600, 762
HpySE526I ACGT 2 cut(s) 279, 423
Hsp92I GRCGYC 2 cut(s) 287, 363
Hsp92II CATG 2 cut(s) 193, 527
HspAI GCGC 2 cut(s) 287, 305
KasI GGCGCC 1 cut(s) 286
Kpn2I TCCGGA 1 cut(s) 578
Kzo9I GATC 4 cut(s) 505, 526, 575, 778
LmnI GCTCC 2 cut(s) 314, 405
Lsp1109I GCAGC 1 cut(s) 626
LweI GCATC 2 cut(s) 761, 779
MaeII ACGT 2 cut(s) 279, 423
MaeIII GTNAC 3 cut(s) 364, 443, 664
MalI GATC 4 cut(s) 507, 528, 577, 780
MboI GATC 4 cut(s) 505, 526, 575, 778
MboII GAAGA 2 cut(s) 431, 668
MfeI CAATTG 1 cut(s) 660
MflI RGATCY 1 cut(s) 575
MhlI GDGCHC 2 cut(s) 222, 269
MluCI AATT 4 cut(s) 122, 338, 660, 672
Mly113I GGCGCC 1 cut(s) 287
MlyI GAGTC 4 cut(s) 254, 363, 451, 490
MroI TCCGGA 1 cut(s) 578
MroXI GAANNNNTTC 1 cut(s) 675
MspI CCGG 6 cut(s) 284, 290, 318, 360, 432, 579
MspR9I CCNGG 7 cut(s) 263, 291, 319, 360, 433, 520, 548
MunI CAATTG 1 cut(s) 660
MvaI CCWGG 3 cut(s) 263, 520, 548
MvnI CGCG 1 cut(s) 305
MwoI GCNNNNNNNGC 4 cut(s) 74, 257, 295, 304
NarI GGCGCC 1 cut(s) 287
NciI CCSGG 4 cut(s) 291, 319, 360, 433
NdeII GATC 4 cut(s) 505, 526, 575, 778
NlaIII CATG 2 cut(s) 193, 527
NlaIV GGNNCC 6 cut(s) 220, 267, 268, 288, 316, 737
NmeAIII GCCGAG 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 364, 443
PaeR7I CTCGAG 1 cut(s) 629
PasI CCCWGGG 1 cut(s) 262
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 582, 623
PkrI GCNGC 4 cut(s) 164, 253, 616, 740
PleI GAGTC 4 cut(s) 253, 362, 450, 490
PluTI GGCGCC 1 cut(s) 290
PpsI GAGTC 4 cut(s) 253, 362, 450, 490
Psp6I CCWGG 3 cut(s) 261, 518, 546
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 3 cut(s) 261, 518, 546
PspN4I GGNNCC 6 cut(s) 220, 267, 268, 288, 316, 737
PspOMI GGGCCC 2 cut(s) 218, 265
PspPI GGNCC 7 cut(s) 183, 218, 219, 265, 266, 516, 736
PsuI RGATCY 1 cut(s) 575
RsaI GTAC 5 cut(s) 430, 565, 572, 710, 722
RsaNI GTAC 5 cut(s) 429, 564, 571, 709, 721
SatI GCNGC 4 cut(s) 163, 252, 615, 739
Sau3AI GATC 4 cut(s) 505, 526, 575, 778
Sau96I GGNCC 7 cut(s) 183, 218, 219, 265, 266, 516, 736
SchI GAGTC 4 cut(s) 254, 363, 451, 490
ScrFI CCNGG 7 cut(s) 263, 291, 319, 360, 433, 520, 548
SduI GDGCHC 2 cut(s) 222, 269
SfaNI GCATC 2 cut(s) 761, 779
SfcI CTRYAG 1 cut(s) 484
SfoI GGCGCC 1 cut(s) 288
Sfr274I CTCGAG 1 cut(s) 629
SinI GGWCC 1 cut(s) 516
SlaI CTCGAG 1 cut(s) 629
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 4 cut(s) 122, 338, 660, 672
SsiI CCGC 9 cut(s) 66, 127, 160, 163, 205, 249, 252, 552, 739
SspDI GGCGCC 1 cut(s) 286
StyD4I CCNGG 7 cut(s) 261, 289, 317, 358, 431, 518, 546
TaaI ACNGT 1 cut(s) 485
TaiI ACGT 2 cut(s) 282, 426
TaqI TCGA 1 cut(s) 630
TasI AATT 4 cut(s) 122, 338, 660, 672
TatI WGTACW 1 cut(s) 570
TauI GCSGC 3 cut(s) 165, 254, 741
TfiI GAWTC 2 cut(s) 582, 623
TseFI GTSAC 2 cut(s) 364, 443
TseI GCWGC 1 cut(s) 614
Tsp45I GTSAC 2 cut(s) 364, 443
TspDTI ATGAA 2 cut(s) 206, 432
TspGWI ACGGA 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 516
XapI RAATTY 2 cut(s) 122, 672
XhoI CTCGAG 1 cut(s) 629
XmnI GAANNNNTTC 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.