Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0011797

Physical Location & Seq

Genomic Coordinates Forward (+)

62699198 .. 62701826

Gene Structure 2629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G034840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCTCAAAACCTTAGCCACCATCTCCACCACATCACCACTCCTCTCCACCACCACAACCACCTCCGCCACCACGGCGAAACTCTCTCTCTCCTCCCCCTCCTTCCTCCTCTCTCTCTCCAAATTCCGCCCCAAACCCCCCCCCCCTTTCCCCCAAACCCGCCGCCCCATCTCCCTCCACAGGCCCACCATGAACATCCTCAACCGCCTCGGCTTCGGGCCCAAGACCCCCGACCCGAACTCCGAGTCCGCCGCCATCGCCCAGGGCCCCGACGACGACGTTCCGGTGCCGGGTCAGCAGTTCGCGCAGTTCGGAGCCGGGTGCTTCTGGGGGGTAGAATTGGCATTTCAGAGAGTCCCCGGCGTCACCAAAACGGAGGTCGGCTACTCTCAGGGGTTGCTCCACAATCCTAGCTATGAAGACGTGTGTACCGGGACGACGAGTCACTCTGAGGTCGTGAGGGTTCAGTATGACCCTAAAGACTGTAGCTTTGAGACTCTGCTTGATCTCTTTTGGTCCAGGCATGATCCCACGACGCTCAATCGCCAGGGTGGTGATGTGGGTACGCAATACAGATCCGGAATCTACTTCTACACACCTGAGCAAGAGCAAGCAGCAAAAGAATCTCTGGAGAAACACCAGAAGGTCGTGAACCGACCAATTGTTACAGAAATTCTTCCTGCCAAGAAGTTCTACCGAGCAGAGGAGTACCACCAGCAGTACCTTGCCAAAGGGGGCCGCTTTGGATTTAGGCAATCTACTGAGAAAGGATGCAATGATCCAATCCGATGCTATGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

266

Amino Acids

29.54

Weight (kDa)

8.74

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMSR	PF01625	102 - 244	5e-60	Peptide methionine sulfoxide reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07460 AT5G07470 AT5G61640 AT5G61640
fragaria_vesca	FvH4_7g26800
malus_domestica	MD01G1176300.v1.1 MD07G1247100.v1.1
prunus_persica	Prupe.2G271200_v2.0.a1
pyrus_communis	pycom01g18690 pycom07g22120
rosa_chinensis	RchiOBHm_Chr1g0373491
rosa_laevigata	RLG00000026822
rosa_roxburghii	Rroxscaffold_4G00284210
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG386900 Rh1BG351200 Rh1CG364000 Rh1DG381700
rosa_wichuraiana	Rw1G034840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	286
AccII	CGCG	1 cut(s)	305
AccIII	TCCGGA	1 cut(s)	578
AciI	CCGC	8 cut(s)	66, 127, 160, 163, 205, 249, 252, 739
AclWI	GGATC	3 cut(s)	521, 570, 773
AcsI	RAATTY	2 cut(s)	122, 672
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	4 cut(s)	430, 565, 710, 722
AfiI	CCNNNNNNNGG	3 cut(s)	180, 290, 703
AflIII	ACRYGT	1 cut(s)	423
AhdI	GACNNNNNGTC	1 cut(s)	441
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	3 cut(s)	261, 518, 546
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	2 cut(s)	414, 489
AluI	AGCT	2 cut(s)	414, 489
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	3 cut(s)	521, 570, 773
Aor13HI	TCCGGA	1 cut(s)	578
AoxI	GGCC	4 cut(s)	182, 218, 265, 736
ApaI	GGGCCC	2 cut(s)	222, 269
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	2 cut(s)	122, 672
ArsI	GACNNNNNNTTYG	6 cut(s)	230, 262, 363, 395, 473, 505
Asp700I	GAANNNNTTC	1 cut(s)	675
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	7 cut(s)	183, 218, 219, 265, 266, 516, 736
AsuC2I	CCSGG	4 cut(s)	291, 319, 360, 433
AsuHPI	GGTGA	3 cut(s)	27, 358, 566
AvaII	GGWCC	1 cut(s)	516
BaeGI	GKGCMC	2 cut(s)	222, 269
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BanI	GGYRCC	1 cut(s)	286
BanII	GRGCYC	2 cut(s)	222, 269
BbsI	GAAGAC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	3 cut(s)	29, 176, 263
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	3 cut(s)	263, 520, 548
BcnI	CCSGG	4 cut(s)	291, 319, 360, 433
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	484
BglI	GCCNNNNNGGC	1 cut(s)	74
BisI	GCNGC	4 cut(s)	163, 252, 615, 739
BlsI	GCNGC	4 cut(s)	164, 253, 616, 740
Bme1390I	CCNGG	7 cut(s)	263, 291, 319, 360, 433, 520, 548
Bme18I	GGWCC	1 cut(s)	516
BmeRI	GACNNNNNGTC	1 cut(s)	441
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	7 cut(s)	183, 218, 219, 265, 266, 516, 736
BmiI	GGNNCC	6 cut(s)	220, 267, 268, 288, 316, 737
BmrFI	CCNGG	7 cut(s)	263, 291, 319, 360, 433, 520, 548
BmsI	GCATC	2 cut(s)	761, 779
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	650
Bpu10I	CCTNAGC	2 cut(s)	13, 600
BpuMI	CCSGG	4 cut(s)	291, 319, 360, 433
BsaHI	GRCGYC	1 cut(s)	363
BsaJI	CCNNGG	6 cut(s)	72, 208, 261, 262, 358, 547
BsaWI	WCCGGW	2 cut(s)	283, 578
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 290, 703
Bse3DI	GCAATG	1 cut(s)	781
BseAI	TCCGGA	1 cut(s)	578
BseBI	CCWGG	3 cut(s)	263, 520, 548
BseDI	CCNNGG	6 cut(s)	72, 208, 261, 262, 358, 547
BseGI	GGATG	2 cut(s)	195, 776
BseLI	CCNNNNNNNGG	3 cut(s)	180, 290, 703
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	4 cut(s)	404, 441, 591, 753
BseRI	GAGGAG	4 cut(s)	32, 82, 98, 719
BseSI	GKGCMC	2 cut(s)	222, 269
BseXI	GCAGC	1 cut(s)	626
Bsh1236I	CGCG	1 cut(s)	305
BshFI	GGCC	4 cut(s)	184, 220, 267, 738
BshNI	GGYRCC	1 cut(s)	286
BsiSI	CCGG	6 cut(s)	284, 290, 318, 360, 432, 579
BslFI	GGGAC	2 cut(s)	341, 448
BslI	CCNNNNNNNGG	3 cut(s)	180, 290, 703
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	2 cut(s)	341, 448
BsnI	GGCC	4 cut(s)	184, 220, 267, 738
Bsp120I	GGGCCC	2 cut(s)	218, 265
Bsp1286I	GDGCHC	2 cut(s)	222, 269
Bsp13I	TCCGGA	1 cut(s)	578
Bsp143I	GATC	4 cut(s)	505, 526, 575, 778
BspACI	CCGC	8 cut(s)	66, 127, 160, 163, 205, 249, 252, 739
BspANI	GGCC	4 cut(s)	184, 220, 267, 738
BspCNI	CTCAG	4 cut(s)	403, 442, 592, 754
BspEI	TCCGGA	1 cut(s)	578
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	6 cut(s)	220, 267, 268, 288, 316, 737
BspPI	GGATC	3 cut(s)	521, 570, 773
BspT107I	GGYRCC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	781
BssECI	CCNNGG	6 cut(s)	72, 208, 261, 262, 358, 547
BssMI	GATC	4 cut(s)	505, 526, 575, 778
BssNI	GRCGYC	1 cut(s)	363
Bst2UI	CCWGG	3 cut(s)	263, 520, 548
Bst4CI	ACNGT	1 cut(s)	485
BstACI	GRCGYC	1 cut(s)	363
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	5 cut(s)	13, 390, 450, 600, 762
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	195, 776
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	4 cut(s)	508, 529, 578, 781
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	4 cut(s)	505, 526, 575, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 257, 295, 304
BstNI	CCWGG	3 cut(s)	263, 520, 548
BstSCI	CCNGG	7 cut(s)	261, 289, 317, 358, 431, 518, 546
BstSFI	CTRYAG	1 cut(s)	484
BstSLI	GKGCMC	2 cut(s)	222, 269
BstUI	CGCG	1 cut(s)	305
BstV1I	GCAGC	1 cut(s)	626
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	575
BsuRI	GGCC	4 cut(s)	184, 220, 267, 738
BtgI	CCRYGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	241
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	195, 776
Cac8I	GCNNGC	1 cut(s)	612
CfoI	GCGC	1 cut(s)	307
Cfr13I	GGNCC	7 cut(s)	183, 218, 219, 265, 266, 516, 736
CseI	GACGC	2 cut(s)	352, 544
Csp6I	GTAC	4 cut(s)	429, 564, 709, 721
CviAII	CATG	2 cut(s)	190, 524
CviQI	GTAC	4 cut(s)	429, 564, 709, 721
DdeI	CTNAG	5 cut(s)	13, 390, 450, 600, 762
DpnI	GATC	4 cut(s)	507, 528, 577, 780
DpnII	GATC	4 cut(s)	505, 526, 575, 778
DriI	GACNNNNNGTC	1 cut(s)	441
Eam1105I	GACNNNNNGTC	1 cut(s)	441
EciI	GGCGGA	3 cut(s)	55, 116, 238
Eco24I	GRGCYC	2 cut(s)	222, 269
Eco47I	GGWCC	1 cut(s)	516
EcoO109I	RGGNCCY	2 cut(s)	265, 266
EcoRII	CCWGG	3 cut(s)	261, 518, 546
EcoT38I	GRGCYC	2 cut(s)	222, 269
FaeI	CATG	2 cut(s)	193, 527
FaiI	YATR	5 cut(s)	191, 417, 471, 525, 795
FaqI	GGGAC	2 cut(s)	341, 448
FatI	CATG	2 cut(s)	189, 523
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	4 cut(s)	163, 252, 615, 739
FokI	GGATG	2 cut(s)	182, 783
FriOI	GRGCYC	2 cut(s)	222, 269
Fsp4HI	GCNGC	4 cut(s)	163, 252, 615, 739
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	4 cut(s)	163, 252, 615, 739
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	4 cut(s)	184, 220, 267, 738
HapII	CCGG	6 cut(s)	284, 290, 318, 360, 432, 579
HgaI	GACGC	2 cut(s)	352, 544
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	193, 527
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HinfI	GANTC	6 cut(s)	245, 354, 442, 496, 582, 623
HpaII	CCGG	6 cut(s)	284, 290, 318, 360, 432, 579
HphI	GGTGA	3 cut(s)	27, 358, 566
Hpy166II	GTNNAC	2 cut(s)	429, 652
Hpy188I	TCNGA	5 cut(s)	244, 314, 351, 451, 788
Hpy188III	TCNNGA	4 cut(s)	457, 579, 629, 649
Hpy8I	GTNNAC	2 cut(s)	429, 652
Hpy99I	CGWCG	5 cut(s)	275, 278, 281, 442, 538
HpyAV	CCTTC	2 cut(s)	112, 637
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	2 cut(s)	279, 423
HpyCH4V	TGCA	1 cut(s)	774
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 257, 295, 304
HpyF3I	CTNAG	5 cut(s)	13, 390, 450, 600, 762
HpySE526I	ACGT	2 cut(s)	279, 423
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	193, 527
HspAI	GCGC	1 cut(s)	305
Kpn2I	TCCGGA	1 cut(s)	578
Kzo9I	GATC	4 cut(s)	505, 526, 575, 778
LmnI	GCTCC	2 cut(s)	314, 405
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	2 cut(s)	761, 779
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	2 cut(s)	279, 423
MaeIII	GTNAC	3 cut(s)	364, 443, 664
MalI	GATC	4 cut(s)	507, 528, 577, 780
MboI	GATC	4 cut(s)	505, 526, 575, 778
MboII	GAAGA	2 cut(s)	431, 668
MfeI	CAATTG	1 cut(s)	660
MflI	RGATCY	1 cut(s)	575
MhlI	GDGCHC	2 cut(s)	222, 269
MluCI	AATT	4 cut(s)	122, 338, 660, 672
MlyI	GAGTC	4 cut(s)	254, 363, 451, 490
MroI	TCCGGA	1 cut(s)	578
MroXI	GAANNNNTTC	1 cut(s)	675
MspI	CCGG	6 cut(s)	284, 290, 318, 360, 432, 579
MspR9I	CCNGG	7 cut(s)	263, 291, 319, 360, 433, 520, 548
MunI	CAATTG	1 cut(s)	660
MvaI	CCWGG	3 cut(s)	263, 520, 548
MvnI	CGCG	1 cut(s)	305
MwoI	GCNNNNNNNGC	4 cut(s)	74, 257, 295, 304
NciI	CCSGG	4 cut(s)	291, 319, 360, 433
NdeII	GATC	4 cut(s)	505, 526, 575, 778
NlaIII	CATG	2 cut(s)	193, 527
NlaIV	GGNNCC	6 cut(s)	220, 267, 268, 288, 316, 737
NmeAIII	GCCGAG	1 cut(s)	189
NmuCI	GTSAC	2 cut(s)	364, 443
PasI	CCCWGGG	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	675
PfeI	GAWTC	2 cut(s)	582, 623
PkrI	GCNGC	4 cut(s)	164, 253, 616, 740
PleI	GAGTC	4 cut(s)	253, 362, 450, 490
PpsI	GAGTC	4 cut(s)	253, 362, 450, 490
Psp6I	CCWGG	3 cut(s)	261, 518, 546
PspGI	CCWGG	3 cut(s)	261, 518, 546
PspN4I	GGNNCC	6 cut(s)	220, 267, 268, 288, 316, 737
PspOMI	GGGCCC	2 cut(s)	218, 265
PspPI	GGNCC	7 cut(s)	183, 218, 219, 265, 266, 516, 736
PsuI	RGATCY	1 cut(s)	575
RsaI	GTAC	4 cut(s)	430, 565, 710, 722
RsaNI	GTAC	4 cut(s)	429, 564, 709, 721
SatI	GCNGC	4 cut(s)	163, 252, 615, 739
Sau3AI	GATC	4 cut(s)	505, 526, 575, 778
Sau96I	GGNCC	7 cut(s)	183, 218, 219, 265, 266, 516, 736
SchI	GAGTC	4 cut(s)	254, 363, 451, 490
ScrFI	CCNGG	7 cut(s)	263, 291, 319, 360, 433, 520, 548
SduI	GDGCHC	2 cut(s)	222, 269
SfaNI	GCATC	2 cut(s)	761, 779
SfcI	CTRYAG	1 cut(s)	484
SinI	GGWCC	1 cut(s)	516
Sse9I	AATT	4 cut(s)	122, 338, 660, 672
SsiI	CCGC	8 cut(s)	66, 127, 160, 163, 205, 249, 252, 739
SspMI	CTAG	1 cut(s)	411
StyD4I	CCNGG	7 cut(s)	261, 289, 317, 358, 431, 518, 546
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	2 cut(s)	282, 426
TasI	AATT	4 cut(s)	122, 338, 660, 672
TauI	GCSGC	3 cut(s)	165, 254, 741
TfiI	GAWTC	2 cut(s)	582, 623
TseFI	GTSAC	2 cut(s)	364, 443
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	2 cut(s)	364, 443
TspDTI	ATGAA	2 cut(s)	206, 432
TspGWI	ACGGA	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	516
XapI	RAATTY	2 cut(s)	122, 672
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.