AT5G07720

Galactosyl transferase GMA12 MNN10 family protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
2455593 .. 2457316
1724 bp
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UTR
Exon/CDS
Intron
AT5G07720.1

Sequence Viewer

Length: 1374 bp
ATGGGAAAGGAGGACGGTTTCAGGACTCAGAAGCGCGTATCAACAGCTTCCTCCGCCGCCGCCGGCGTTCTTCCGACGACGATGGCGAGTGGTGGAGTAAGGAGACCACCACCACGTGGTAGACAGATCCAAAAGACGTTCAACAACGTGAAAATGACAATCCTTTGTGGCTTCGTCACCATCCTCGTCCTACGTGGCACTATCGGCATTAACTTCGGAACTTCCGACGCCGACGTCGTAAACCAGAACATTATCGAAGAGACTAACCGACTTCTAGCTGAGATCCGATCCGATTCGGATCCTACCGACTCAAACGAGCCACCTGATTCGGATCTTGACCTCAACATGACGTACACTCTCGGACCCAAGATCACTAACTGGGATCAAAAACGGAAACTTTGGTTAACGCAAAACCCAGATTTCCCCAGTTTCATCAATGGTAAAGCTAAGGTTTTGCTTTTAACAGGTTCGCCTCCAAAACCTTGTGACAACCCTATTGGTGATCATTACCTGCTGAAATCGGTGAAGAACAAGATTGATTATTGTAGGATTCATGGGATTGAGATTGTGTATAACATGGCTCATTTAGACAAGGAGCTTGCTGGGTATTGGGCAAAGCTTCCAATGATCAGGAGATTGATGTTGTCTCATCCTGAAATTGAATGGATTTGGTGGATGGACAGTGATGCTTTGTTCACTGACATGGTGTTTGAGATTCCTTTGTCTAGATATGAGAACCATAACTTGGTTATTCATGGATATCCTGATTTGTTGTTTGATCAGAAGTCTTGGATTGCTTTGAATACTGGTAGCTTCTTGTTTAGGAACTGTCAATGGTCTTTGGATTTGTTGGATGCTTGGGCTCCAATGGGACCTAAAGGACCTATTCGGGAAGAAGCTGGGAAGATTCTCACCGCGAATCTTAAAGGAAGACCGGCTTTCGAAGCGGATGATCAGTCTGCATTGATCTATCTGCTGCTTTCGCAGAAGGAGACGTGGATGGAGAAAGTGTTTGTGGAGAATCAGTACTATCTTCATGGGTTTTGGGAAGGTTTAGTGGATAAGTATGAGGAGATGATGGAGAAGTACCATCCCGGTTTGGGAGATGAAAGATGGCCTTTTATTACTCACTTTGTTGGATGCAAACCGTGTGGGAGTTATGCTGATTACGCGGTTGAACGTTGCTTGAAGAGTATGGAGCGAGCATTCAACTTTGCGGATAATCAAGTGCTCAAACTGTATGGGTTTGGTCACAGGGGATTGTTAAGTCCTAAGATCAAGAGGATCAGAAACGAGACAACATTTCCATTGAAATTCGTAGACAGGTTTGATATTCGGAGAACAACACCGCTCAAGATTGAAGCACGAAGCTAG

Protein Analysis

457

Amino Acids

52.37

Weight (kDa)

7.61

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 148 - 387 2.6e-64 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AatII GACGTC 1 cut(s) 237
Acc36I ACCTGC 1 cut(s) 519
AccB7I CCANNNNNTGG 2 cut(s) 116, 745
AccBSI CCGCTC 1 cut(s) 1351
AccI GTMKAC 2 cut(s) 121, 1320
AccII CGCG 3 cut(s) 36, 917, 1172
AciI CCGC 8 cut(s) 54, 57, 60, 915, 947, 1172, 1217, 1349
AclI AACGTT 1 cut(s) 1180
AclWI GGATC 8 cut(s) 121, 277, 282, 293, 306, 339, 390, 1292
AcsI RAATTY 1 cut(s) 1313
AcvI CACGTG 1 cut(s) 116
AcyI GRCGYC 2 cut(s) 228, 234
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 3 cut(s) 353, 1028, 1088
AfiI CCNNNNNNNGG 3 cut(s) 116, 745, 1100
AgsI TTSAA 8 cut(s) 142, 662, 802, 1178, 1189, 1210, 1312, 1361
AjiI CACGTC 1 cut(s) 996
AjuI GAANNNNNNNTTGG 2 cut(s) 728, 760
AluBI AGCT 8 cut(s) 47, 278, 446, 598, 619, 813, 899, 1371
AluI AGCT 8 cut(s) 47, 278, 446, 598, 619, 813, 899, 1371
Alw21I GWGCWC 1 cut(s) 1233
Alw26I GTCTC 5 cut(s) 97, 254, 651, 986, 1289
AlwI GGATC 8 cut(s) 121, 277, 282, 293, 306, 339, 390, 1292
AoxI GGCC 1 cut(s) 1115
ApeKI GCWGC 1 cut(s) 976
ApoI RAATTY 1 cut(s) 1313
ArsI GACNNNNNNTTYG 2 cut(s) 692, 724
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 3 cut(s) 362, 872, 881
AsuC2I CCSGG 1 cut(s) 1095
AsuHPI GGTGA 4 cut(s) 169, 512, 535, 904
AsuII TTCGAA 1 cut(s) 942
AvaII GGWCC 3 cut(s) 362, 872, 881
BamHI GGATCC 1 cut(s) 298
BanII GRGCYC 1 cut(s) 865
BbrPI CACGTG 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 937
Bbv12I GWGCWC 1 cut(s) 1233
BbvI GCAGC 1 cut(s) 963
BccI CCATC 7 cut(s) 76, 188, 670, 994, 1072, 1098, 1107
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BclI TGATCA 4 cut(s) 502, 627, 778, 952
BcnI CCSGG 1 cut(s) 1095
BcoDI GTCTC 5 cut(s) 97, 254, 651, 986, 1289
BfaI CTAG 3 cut(s) 275, 726, 1372
BfuAI ACCTGC 1 cut(s) 519
BisI GCNGC 3 cut(s) 57, 60, 977
BlsI GCNGC 3 cut(s) 58, 61, 978
BmcAI AGTACT 1 cut(s) 1028
Bme1390I CCNGG 1 cut(s) 1095
Bme18I GGWCC 3 cut(s) 362, 872, 881
BmgBI CACGTC 1 cut(s) 996
BmgT120I GGNCC 3 cut(s) 362, 872, 881
BmiI GGNNCC 4 cut(s) 300, 364, 864, 873
BmrFI CCNGG 1 cut(s) 1095
BmrI ACTGGG 2 cut(s) 388, 420
BmsI GCATC 3 cut(s) 676, 844, 1130
BmuI ACTGGG 2 cut(s) 388, 420
BpiI GAAGAC 1 cut(s) 937
Bpu10I CCTNAGC 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 942
BpuEI CTTGAG 1 cut(s) 1337
BpuMI CCSGG 1 cut(s) 1095
BsaAI YACGTR 2 cut(s) 116, 194
BsaBI GATNNNNATC 2 cut(s) 297, 330
BsaHI GRCGYC 2 cut(s) 228, 234
BsaI GGTCTC 1 cut(s) 97
BsaXI ACNNNNNCTCC 4 cut(s) 995, 1010, 1025, 1040
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 745, 1100
Bse118I RCCGGY 2 cut(s) 62, 934
Bse1I ACTGG 3 cut(s) 383, 426, 811
Bse8I GATNNNNATC 2 cut(s) 297, 330
BseGI GGATG 8 cut(s) 180, 649, 681, 859, 955, 1005, 1090, 1145
BseJI GATNNNNATC 2 cut(s) 297, 330
BseLI CCNNNNNNNGG 3 cut(s) 116, 745, 1100
BseMII CTCAG 2 cut(s) 41, 270
BseNI ACTGG 3 cut(s) 383, 426, 811
BseRI GAGGAG 1 cut(s) 1085
BseXI GCAGC 1 cut(s) 963
BseYI CCCAGC 2 cut(s) 602, 899
Bsh1236I CGCG 3 cut(s) 36, 917, 1172
BshFI GGCC 1 cut(s) 1117
BsiHKAI GWGCWC 1 cut(s) 1233
BsiSI CCGG 3 cut(s) 63, 935, 1095
BslFI GGGAC 1 cut(s) 885
BslI CCNNNNNNNGG 3 cut(s) 116, 745, 1100
BsmAI GTCTC 5 cut(s) 97, 254, 651, 986, 1289
BsmBI CGTCTC 1 cut(s) 986
BsmFI GGGAC 1 cut(s) 885
BsmI GAATGC 1 cut(s) 1205
BsnI GGCC 1 cut(s) 1117
Bso31I GGTCTC 1 cut(s) 97
Bsp119I TTCGAA 1 cut(s) 942
Bsp1286I GDGCHC 2 cut(s) 865, 1233
BspACI CCGC 8 cut(s) 54, 57, 60, 915, 947, 1172, 1217, 1349
BspANI GGCC 1 cut(s) 1117
BspCNI CTCAG 2 cut(s) 40, 271
BspFNI CGCG 3 cut(s) 36, 917, 1172
BspLI GGNNCC 4 cut(s) 300, 364, 864, 873
BspMI ACCTGC 1 cut(s) 519
BspPI GGATC 8 cut(s) 121, 277, 282, 293, 306, 339, 390, 1292
BspT104I TTCGAA 1 cut(s) 942
BspTNI GGTCTC 1 cut(s) 97
BsrBI CCGCTC 1 cut(s) 1351
BsrFI RCCGGY 2 cut(s) 62, 934
BsrI ACTGG 3 cut(s) 383, 426, 811
BssAI RCCGGY 2 cut(s) 62, 934
BssNI GRCGYC 2 cut(s) 228, 234
Bst4CI ACNGT 5 cut(s) 17, 683, 830, 1149, 1239
Bst6I CTCTTC 2 cut(s) 252, 1184
BstACI GRCGYC 2 cut(s) 228, 234
BstBAI YACGTR 2 cut(s) 116, 194
BstBI TTCGAA 1 cut(s) 942
BstC8I GCNNGC 3 cut(s) 64, 600, 1203
BstDEI CTNAG 4 cut(s) 27, 279, 447, 1272
BstF5I GGATG 8 cut(s) 180, 649, 681, 859, 955, 1005, 1090, 1145
BstFNI CGCG 3 cut(s) 36, 917, 1172
BstHHI GCGC 1 cut(s) 36
BstMAI GTCTC 5 cut(s) 97, 254, 651, 986, 1289
BstMWI GCNNNNNNNGC 5 cut(s) 53, 204, 944, 982, 1169
BstSCI CCNGG 1 cut(s) 1093
BstUI CGCG 3 cut(s) 36, 917, 1172
BstV1I GCAGC 1 cut(s) 963
BstV2I GAAGAC 1 cut(s) 937
BstX2I RGATCY 4 cut(s) 126, 282, 298, 331
BstYI RGATCY 4 cut(s) 126, 282, 298, 331
BsuRI GGCC 1 cut(s) 1117
BtrI CACGTC 1 cut(s) 996
BtsCI GGATG 8 cut(s) 180, 649, 681, 859, 955, 1005, 1090, 1145
BtsIMutI CAGTG 2 cut(s) 688, 696
BveI ACCTGC 1 cut(s) 519
Cac8I GCNNGC 3 cut(s) 64, 600, 1203
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 2 cut(s) 62, 934
Cfr13I GGNCC 3 cut(s) 362, 872, 881
CseI GACGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 352, 1027, 1087
CspCI CAANNNNNGTGG 2 cut(s) 1132, 1167
CviAII CATG 6 cut(s) 346, 554, 577, 703, 755, 1037
CviQI GTAC 3 cut(s) 352, 1027, 1087
DdeI CTNAG 4 cut(s) 27, 279, 447, 1272
DraIII CACNNNGTG 1 cut(s) 116
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eam1104I CTCTTC 2 cut(s) 252, 1184
EarI CTCTTC 2 cut(s) 252, 1184
EciI GGCGGA 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 865
Eco31I GGTCTC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 761
Eco47I GGWCC 3 cut(s) 362, 872, 881
Eco72I CACGTG 1 cut(s) 116
EcoO109I RGGNCCY 2 cut(s) 872, 881
EcoRV GATATC 1 cut(s) 761
EcoT38I GRGCYC 1 cut(s) 865
Esp3I CGTCTC 1 cut(s) 986
FaeI CATG 6 cut(s) 349, 557, 580, 706, 758, 1040
FalI AAGNNNNNCTT 4 cut(s) 922, 954, 1102, 1134
FaqI GGGAC 1 cut(s) 885
FatI CATG 6 cut(s) 345, 553, 576, 702, 754, 1036
FbaI TGATCA 4 cut(s) 502, 627, 778, 952
FblI GTMKAC 2 cut(s) 121, 1320
Fnu4HI GCNGC 3 cut(s) 57, 60, 977
FokI GGATG 8 cut(s) 167, 636, 688, 866, 962, 1012, 1077, 1152
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 3 cut(s) 57, 60, 977
FspBI CTAG 3 cut(s) 275, 726, 1372
GlaI GCGC 1 cut(s) 35
GluI GCNGC 3 cut(s) 57, 60, 977
GsaI CCCAGC 2 cut(s) 606, 903
HaeIII GGCC 1 cut(s) 1117
HapII CCGG 3 cut(s) 63, 935, 1095
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 36
Hin1I GRCGYC 2 cut(s) 228, 234
Hin1II CATG 6 cut(s) 349, 557, 580, 706, 758, 1040
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HincII GTYRAC 1 cut(s) 405
HindII GTYRAC 1 cut(s) 405
HindIII AAGCTT 1 cut(s) 617
HinfI GANTC 9 cut(s) 25, 293, 308, 326, 550, 715, 907, 919, 1021
HpaI GTTAAC 1 cut(s) 405
HpaII CCGG 3 cut(s) 63, 935, 1095
HphI GGTGA 4 cut(s) 169, 512, 535, 904
Hpy166II GTNNAC 6 cut(s) 122, 241, 354, 405, 696, 1321
Hpy188III TCNNGA 9 cut(s) 22, 335, 631, 653, 726, 764, 890, 1279, 1354
Hpy8I GTNNAC 6 cut(s) 122, 241, 354, 405, 696, 1321
Hpy99I CGWCG 5 cut(s) 79, 82, 230, 236, 239
HpyAV CCTTC 2 cut(s) 982, 1043
HpyCH4III ACNGT 5 cut(s) 17, 683, 830, 1149, 1239
HpyCH4IV ACGT 8 cut(s) 115, 137, 147, 193, 234, 350, 995, 1180
HpyCH4V TGCA 2 cut(s) 962, 1143
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 204, 944, 982, 1169
HpyF3I CTNAG 4 cut(s) 27, 279, 447, 1272
HpySE526I ACGT 8 cut(s) 115, 137, 147, 193, 234, 350, 995, 1180
Hsp92I GRCGYC 2 cut(s) 228, 234
Hsp92II CATG 6 cut(s) 349, 557, 580, 706, 758, 1040
HspAI GCGC 1 cut(s) 34
KroI GCCGGC 1 cut(s) 62
KroNI GCCGGC 1 cut(s) 64
Ksp22I TGATCA 4 cut(s) 502, 627, 778, 952
KspAI GTTAAC 1 cut(s) 405
LmnI GCTCC 3 cut(s) 595, 868, 1198
Lsp1109I GCAGC 1 cut(s) 963
LweI GCATC 3 cut(s) 676, 844, 1130
MaeI CTAG 3 cut(s) 275, 726, 1372
MaeII ACGT 8 cut(s) 115, 137, 147, 193, 234, 350, 995, 1180
MaeIII GTNAC 3 cut(s) 175, 485, 1250
MbiI CCGCTC 1 cut(s) 1351
MboII GAAGA 8 cut(s) 62, 269, 538, 905, 916, 942, 1025, 1201
MflI RGATCY 4 cut(s) 126, 282, 298, 331
MhlI GDGCHC 2 cut(s) 865, 1233
MluCI AATT 2 cut(s) 657, 1313
MlyI GAGTC 2 cut(s) 19, 302
MmeI TCCRAC 4 cut(s) 98, 249, 831, 1117
MnlI CCTC 7 cut(s) 4, 61, 194, 350, 483, 1063, 1275
MreI CGCCGGCG 1 cut(s) 62
MroNI GCCGGC 1 cut(s) 62
MseI TTAA 5 cut(s) 210, 404, 461, 924, 1265
MslI CAYNNNNRTG 1 cut(s) 701
MspI CCGG 3 cut(s) 63, 935, 1095
MspR9I CCNGG 1 cut(s) 1095
Mva1269I GAATGC 1 cut(s) 1205
MvnI CGCG 3 cut(s) 36, 917, 1172
MwoI GCNNNNNNNGC 5 cut(s) 53, 204, 944, 982, 1169
NaeI GCCGGC 1 cut(s) 64
NciI CCSGG 1 cut(s) 1095
NgoMIV GCCGGC 1 cut(s) 62
NlaIII CATG 6 cut(s) 349, 557, 580, 706, 758, 1040
NlaIV GGNNCC 4 cut(s) 300, 364, 864, 873
NmuCI GTSAC 3 cut(s) 175, 485, 1250
NspV TTCGAA 1 cut(s) 942
PcsI WCGNNNNNNNCGW 3 cut(s) 83, 222, 234
PctI GAATGC 1 cut(s) 1205
PdiI GCCGGC 1 cut(s) 64
PfeI GAWTC 7 cut(s) 293, 326, 550, 715, 907, 919, 1021
PflMI CCANNNNNTGG 2 cut(s) 116, 745
PkrI GCNGC 3 cut(s) 58, 61, 978
PleI GAGTC 2 cut(s) 19, 302
PmaCI CACGTG 1 cut(s) 116
PmlI CACGTG 1 cut(s) 116
PpsI GAGTC 2 cut(s) 19, 302
Ppu21I YACGTR 2 cut(s) 116, 194
PpuMI RGGWCCY 2 cut(s) 872, 881
Psp1406I AACGTT 1 cut(s) 1180
Psp5II RGGWCCY 2 cut(s) 872, 881
PspCI CACGTG 1 cut(s) 116
PspFI CCCAGC 2 cut(s) 602, 899
PspN4I GGNNCC 4 cut(s) 300, 364, 864, 873
PspPI GGNCC 3 cut(s) 362, 872, 881
PspPPI RGGWCCY 2 cut(s) 872, 881
PsuI RGATCY 4 cut(s) 126, 282, 298, 331
RsaI GTAC 3 cut(s) 353, 1028, 1088
RsaNI GTAC 3 cut(s) 352, 1027, 1087
RseI CAYNNNNRTG 1 cut(s) 701
SaqAI TTAA 5 cut(s) 210, 404, 461, 924, 1265
SatI GCNGC 3 cut(s) 57, 60, 977
Sau96I GGNCC 3 cut(s) 362, 872, 881
ScaI AGTACT 1 cut(s) 1028
SchI GAGTC 2 cut(s) 19, 302
ScrFI CCNGG 1 cut(s) 1095
SduI GDGCHC 2 cut(s) 865, 1233
SfaNI GCATC 3 cut(s) 676, 844, 1130
SfuI TTCGAA 1 cut(s) 942
SgrAI CRCCGGYG 1 cut(s) 62
SinI GGWCC 3 cut(s) 362, 872, 881
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 1352
SmoI CTYRAG 1 cut(s) 1352
Sse9I AATT 2 cut(s) 657, 1313
SsiI CCGC 8 cut(s) 54, 57, 60, 915, 947, 1172, 1217, 1349
SspMI CTAG 3 cut(s) 275, 726, 1372
StyD4I CCNGG 1 cut(s) 1093
TaaI ACNGT 5 cut(s) 17, 683, 830, 1149, 1239
TaiI ACGT 8 cut(s) 118, 140, 150, 196, 237, 353, 998, 1183
TaqI TCGA 2 cut(s) 255, 942
TasI AATT 2 cut(s) 657, 1313
TatI WGTACW 1 cut(s) 1026
TauI GCSGC 2 cut(s) 59, 62
TfiI GAWTC 7 cut(s) 293, 326, 550, 715, 907, 919, 1021
Tru1I TTAA 5 cut(s) 210, 404, 461, 924, 1265
Tru9I TTAA 5 cut(s) 210, 404, 461, 924, 1265
TscAI CASTG 2 cut(s) 688, 703
TseFI GTSAC 3 cut(s) 175, 485, 1250
TseI GCWGC 1 cut(s) 976
Tsp45I GTSAC 3 cut(s) 175, 485, 1250
TspDTI ATGAA 5 cut(s) 421, 542, 743, 1025, 1122
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 2 cut(s) 688, 703
Van91I CCANNNNNTGG 2 cut(s) 116, 745
VpaK11BI GGWCC 3 cut(s) 362, 872, 881
XapI RAATTY 1 cut(s) 1313
XbaI TCTAGA 1 cut(s) 725
XmiI GTMKAC 2 cut(s) 121, 1320
XspI CTAG 3 cut(s) 275, 726, 1372
ZraI GACGTC 1 cut(s) 235
ZrmI AGTACT 1 cut(s) 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.