Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005095

Physical Location & Seq

Genomic Coordinates Forward (+)

37577623 .. 37578063

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24734

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGTTCATCAATGGCACCCAGATCAGTACCCGAACGTGACGTACACGCTCAGACCCAAGATCGGGAACTGGGACACGGAGAGAAGGCAGTGGCTTCAGTTGAATTGGGAACTTTGGGTATGGAGCTTGCTGGGTATTGGGTCAAGTTGCCTTTGATTAGGAAGCTGATGTTTTCGCATCCTGAGGTGGAGTGGATTTGGTGGATGGATAGTGATGCAATGTTTACTGATATGGTGTTTGAGATCCCATTGGGGAAGTATGACAAGCATAATCTTGTTATTCATGGCTACCCAGATTTGCTGCTTGATCAGAAGTCTTGGATTGCTTTGAACACTAGGAGTTTTTTGTTTAGGAATTGCCAGTGGTCTTTGGATTTGCTTGATGCTTGGGCTCCGATGGGTCTGAAGGAGCTGATAAGAGAGGAGGCCGGAAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

146

Amino Acids

16.91

Weight (kDa)

5.3

Isoelectric Point (pI)

29.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	41 - 136	6.7e-28	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74380 AT5G07720
fragaria_vesca	FvH4_5g14540 FvH4_5g14540
malus_domestica	MD06G1197600.v1.1 MD14G1205000.v1.1
prunus_persica	Prupe.5G198300_v2.0.a1
pyrus_communis	pycom14g16940
rosa_chinensis	RchiOBHm_Chr1g0355441 RchiOBHm_Chr6g0275691 RchiOBHm_Chr7g0182111 RchiOBHm_Chr7g0199921
rosa_laevigata	RLG00000005150 RLG00000007126 RLG00000018754 RLG00000027626 RLG00000033700
rosa_multiflora	Rmu_co8179518.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271500
rosa_rugosa	Rorug06G0445700
rosa_samantha	Rh1BG320500 Rh1CG334500 Rh1DG351200 Rh6CG214000 Rh6DG203300 Rh7AG048400 Rh7BG048200 Rh7DG047600
rosa_wichuraiana	Rw0G021050 Rw7G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	16
AclWI	GGATC	1 cut(s)	238
AcuI	CTGAAG	2 cut(s)	81, 425
AfaI	GTAC	2 cut(s)	30, 45
AfiI	CCNNNNNNNGG	2 cut(s)	63, 64
AgsI	TTSAA	2 cut(s)	104, 331
AluBI	AGCT	3 cut(s)	127, 166, 412
AluI	AGCT	3 cut(s)	127, 166, 412
AlwI	GGATC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	301
AxyI	CCTNAGG	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	288
BccI	CCATC	2 cut(s)	199, 391
BclI	TGATCA	1 cut(s)	307
BfaI	CTAG	1 cut(s)	336
BisI	GCNGC	1 cut(s)	302
BlsI	GCNGC	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	18, 393
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	187, 205, 373
BmuI	ACTGGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 64
Bse1I	ACTGG	2 cut(s)	75, 361
Bse21I	CCTNAGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	225
BseGI	GGATG	2 cut(s)	178, 210
BseLI	CCNNNNNNNGG	2 cut(s)	63, 64
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	65, 174
BseNI	ACTGG	2 cut(s)	75, 361
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	428
BshNI	GGYRCC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	63, 64
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	4 cut(s)	23, 61, 243, 307
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	2 cut(s)	64, 175
BspLI	GGNNCC	2 cut(s)	18, 393
BspPI	GGATC	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	2 cut(s)	75, 361
BssMI	GATC	4 cut(s)	23, 61, 243, 307
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	51, 183
BstF5I	GGATG	2 cut(s)	178, 210
BstKTI	GATC	4 cut(s)	26, 64, 246, 310
BstMBI	GATC	4 cut(s)	23, 61, 243, 307
BstV1I	GCAGC	1 cut(s)	288
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	428
BtsCI	GGATG	2 cut(s)	178, 210
BtsI	GCAGTG	1 cut(s)	96
BtsIMutI	CAGTG	2 cut(s)	96, 368
Cac8I	GCNNGC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	29, 44
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	7 cut(s)	95, 127, 166, 288, 392, 412, 428
CviKI_1	RGCY	7 cut(s)	95, 127, 166, 288, 392, 412, 428
CviQI	GTAC	2 cut(s)	29, 44
DdeI	CTNAG	2 cut(s)	51, 183
DpnI	GATC	4 cut(s)	25, 63, 245, 309
DpnII	GATC	4 cut(s)	23, 61, 243, 307
Eco24I	GRGCYC	1 cut(s)	394
Eco57I	CTGAAG	2 cut(s)	81, 425
Eco81I	CCTNAGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	394
FaeI	CATG	1 cut(s)	287
FaiI	YATR	5 cut(s)	122, 233, 261, 270, 285
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	1 cut(s)	283
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	302
FokI	GGATG	2 cut(s)	165, 217
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	1 cut(s)	302
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	1 cut(s)	302
GsaI	CCCAGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	428
HapII	CCGG	1 cut(s)	429
Hin1II	CATG	1 cut(s)	287
HpaII	CCGG	1 cut(s)	429
Hpy166II	GTNNAC	2 cut(s)	46, 225
Hpy188I	TCNGA	4 cut(s)	54, 312, 396, 405
Hpy188III	TCNNGA	2 cut(s)	65, 182
Hpy8I	GTNNAC	2 cut(s)	46, 225
HpyAV	CCTTC	3 cut(s)	79, 400, 426
HpyCH4IV	ACGT	2 cut(s)	37, 42
HpyCH4V	TGCA	1 cut(s)	218
HpyF3I	CTNAG	2 cut(s)	51, 183
HpySE526I	ACGT	2 cut(s)	37, 42
Hsp92II	CATG	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	4 cut(s)	23, 61, 243, 307
LmnI	GCTCC	3 cut(s)	124, 397, 409
LpnPI	CCDG	6 cut(s)	34, 56, 117, 195, 306, 374
Lsp1109I	GCAGC	1 cut(s)	288
LweI	GCATC	3 cut(s)	187, 205, 373
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	2 cut(s)	37, 42
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	4 cut(s)	25, 63, 245, 309
MboI	GATC	4 cut(s)	23, 61, 243, 307
MflI	RGATCY	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	394
MluCI	AATT	2 cut(s)	104, 355
MnlI	CCTC	3 cut(s)	178, 415, 418
MspI	CCGG	1 cut(s)	429
NdeII	GATC	4 cut(s)	23, 61, 243, 307
NlaIII	CATG	1 cut(s)	287
NlaIV	GGNNCC	2 cut(s)	18, 393
NmuCI	GTSAC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	303
PspFI	CCCAGC	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	18, 393
PsrI	GAACNNNNNNTAC	2 cut(s)	27, 59
PsuI	RGATCY	1 cut(s)	243
RsaI	GTAC	2 cut(s)	30, 45
RsaNI	GTAC	2 cut(s)	29, 44
SatI	GCNGC	1 cut(s)	302
Sau3AI	GATC	4 cut(s)	23, 61, 243, 307
SduI	GDGCHC	1 cut(s)	394
SetI	ASST	7 cut(s)	40, 45, 129, 168, 189, 414, 437
SfaNI	GCATC	3 cut(s)	187, 205, 373
Sse9I	AATT	2 cut(s)	104, 355
SspMI	CTAG	1 cut(s)	336
TaiI	ACGT	2 cut(s)	40, 45
TasI	AATT	2 cut(s)	104, 355
TscAI	CASTG	2 cut(s)	96, 368
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	38
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	2 cut(s)	96, 368
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.