Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005095

Physical Location & Seq

Genomic Coordinates Forward (+)

17898532 .. 17898783

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17891

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGGTCAGGACAATTTCAGCCCCCAGAAGCAGAGCTCAAGTGGGCTACCCACCACCATCGCCACCTCAACTCAAGCAACTTCCGCTGGCCGCGTCTTGCCACTTGGCCGCCAGATCCAAGAGACATTCAACAACATCAAAATCACCATTCTCTGCGGCTTCATCACCATCCTGGTCCTACATGGCACGATCGGAGTGGGCAACCTCGGCAGCTCTAAGGCCGACGCCGTGAACCAGAACTTAATCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

83

Amino Acids

8.68

Weight (kDa)

7.96

Isoelectric Point (pI)

49.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74380 AT5G07720
fragaria_vesca	FvH4_5g14540 FvH4_5g14540
malus_domestica	MD06G1197600.v1.1 MD14G1205000.v1.1
prunus_persica	Prupe.5G198300_v2.0.a1
pyrus_communis	pycom14g16940
rosa_chinensis	RchiOBHm_Chr1g0355441 RchiOBHm_Chr6g0275691 RchiOBHm_Chr7g0182111 RchiOBHm_Chr7g0199921
rosa_laevigata	RLG00000005150 RLG00000007126 RLG00000018754 RLG00000027626 RLG00000033700
rosa_multiflora	Rmu_co8179518.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271500
rosa_rugosa	Rorug06G0445700
rosa_samantha	Rh1BG320500 Rh1CG334500 Rh1DG351200 Rh6CG214000 Rh6DG203300 Rh7AG048400 Rh7BG048200 Rh7DG047600
rosa_wichuraiana	Rw0G021050 Rw7G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	93
AciI	CCGC	4 cut(s)	84, 91, 109, 156
AclWI	GGATC	1 cut(s)	109
AcoI	YGGCCR	2 cut(s)	88, 106
AcyI	GRCGYC	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	36, 213
AluI	AGCT	2 cut(s)	36, 213
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	1 cut(s)	109
AoxI	GGCC	3 cut(s)	88, 106, 219
ApeKI	GCWGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	136, 157
AvaII	GGWCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	2 cut(s)	65, 176
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	116
BisI	GCNGC	4 cut(s)	91, 109, 157, 211
BlsI	GCNGC	4 cut(s)	92, 110, 158, 212
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmrFI	CCNGG	1 cut(s)	173
BpuEI	CTTGAG	2 cut(s)	22, 57
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	205
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	168
BseXI	GCAGC	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	3 cut(s)	90, 108, 221
BsiEI	CGRYCG	1 cut(s)	192
BsiHKAI	GWGCWC	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	90, 108, 221
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	114, 189
BspACI	CCGC	4 cut(s)	84, 91, 109, 156
BspANI	GGCC	3 cut(s)	90, 108, 221
BspFNI	CGCG	1 cut(s)	93
BspPI	GGATC	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	2 cut(s)	114, 189
BssNI	GRCGYC	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	117, 192
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	2 cut(s)	114, 189
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 207
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstUI	CGCG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	3 cut(s)	90, 108, 221
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	168
Cac8I	GCNNGC	1 cut(s)	88
Cfr13I	GGNCC	1 cut(s)	175
CseI	GACGC	2 cut(s)	82, 233
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	8 cut(s)	21, 36, 46, 90, 108, 159, 213, 221
CviKI_1	RGCY	8 cut(s)	21, 36, 46, 90, 108, 159, 213, 221
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	116, 191
DpnII	GATC	2 cut(s)	114, 189
EaeI	YGGCCR	2 cut(s)	88, 106
Ecl136II	GAGCTC	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	175
Eco53kI	GAGCTC	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	171
EcoT38I	GRGCYC	1 cut(s)	38
FaeI	CATG	1 cut(s)	185
FaiI	YATR	1 cut(s)	183
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	4 cut(s)	91, 109, 157, 211
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	4 cut(s)	91, 109, 157, 211
GluI	GCNGC	4 cut(s)	91, 109, 157, 211
HaeIII	GGCC	3 cut(s)	90, 108, 221
HgaI	GACGC	2 cut(s)	82, 233
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	136, 157
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	194
Hpy188III	TCNNGA	1 cut(s)	8
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 207
HpyF3I	CTNAG	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	185
Kzo9I	GATC	2 cut(s)	114, 189
LpnPI	CCDG	6 cut(s)	38, 72, 125, 158, 185, 248
Lsp1109I	GCAGC	1 cut(s)	222
MalI	GATC	2 cut(s)	116, 191
MboI	GATC	2 cut(s)	114, 189
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	13
MnlI	CCTC	2 cut(s)	76, 215
MseI	TTAA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	173
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	83, 207
NdeII	GATC	2 cut(s)	114, 189
NlaIII	CATG	1 cut(s)	185
NmeAIII	GCCGAG	1 cut(s)	186
PkrI	GCNGC	4 cut(s)	92, 110, 158, 212
Ple19I	CGATCG	1 cut(s)	192
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	1 cut(s)	171
PspGI	CCWGG	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	114
PvuI	CGATCG	1 cut(s)	192
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	4 cut(s)	91, 109, 157, 211
Sau3AI	GATC	2 cut(s)	114, 189
Sau96I	GGNCC	1 cut(s)	175
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	4 cut(s)	38, 68, 207, 215
SinI	GGWCC	1 cut(s)	175
SmlI	CTYRAG	2 cut(s)	37, 72
SmoI	CTYRAG	2 cut(s)	37, 72
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	4 cut(s)	84, 91, 109, 156
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	171
TaqI	TCGA	1 cut(s)	246
TasI	AATT	1 cut(s)	13
TauI	GCSGC	3 cut(s)	93, 111, 159
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TseI	GCWGC	1 cut(s)	210
TspDTI	ATGAA	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.