Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0005095

Physical Location & Seq

Genomic Coordinates Reverse (-)

13766644 .. 13767485

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007126

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGGTCAGGACAAGATCCGATCCGAGGCCGACGCCGTGAACCAGAACTTAATAGAGGAGACGAATCGAATCCTGGAAGAGATCAGATCCGACAGTGACCCCAACGACCCTGATGAGTTCATCAATGACACCCAGATCAGTAACCCGAACGTGACGTACACGCTCGGACCCAAGATCGGAAATTGGGACATGGAGAGAAGGCGATGGCTTCAGTCGAACTCGGAGTTTCCGAGTTTGTGGTCTTTGGATTTGCTTGATGCTTGGGCTTCGATGGGTCCCAAGGGCCCGATAAAAGAGAAGGCCGGGAAGGTTTTGACGGCGAATTTGAAGGGTAGGCCGGCGTTTGAGGCGGATGATCAGTCTGCATTGATATACTTGTTGCTGTCGCAGAAGGATCTGTGGATGGAGAAGGTTTTTGTGGAGAATTCATATTACTTGCACGGATATTGGGCTGGATTGGTGGATCGGTATGAGGAGATGATAAAGAAGTATCATCCGGGTTTGGGGGATGAGAGGTGGCCGTTTGTGACCCATTTTGTGGGTTGCAAGCCTTGTGGGAGTTATAGGGATTATCCGGTGGAGAGGTGCTTGAGTAGCATGGAGAGGGCTTTCAATTTTGCAGATAACCAGTGCTTAAGCTTTACGGGTTGGTGGCTGAAGGTGGTGGTCTCCGATGTTGGCAGAGGAAGAGAAGAAGAAGAGAGGTCAGGAAGAGAGAGAGGGGCCGTGCGGCAAGAGAGAGAGGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

251

Amino Acids

28.9

Weight (kDa)

5.06

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	79 - 188	4.2e-16	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74380 AT5G07720
fragaria_vesca	FvH4_5g14540 FvH4_5g14540
malus_domestica	MD06G1197600.v1.1 MD14G1205000.v1.1
prunus_persica	Prupe.5G198300_v2.0.a1
pyrus_communis	pycom14g16940
rosa_chinensis	RchiOBHm_Chr1g0355441 RchiOBHm_Chr6g0275691 RchiOBHm_Chr7g0182111 RchiOBHm_Chr7g0199921
rosa_laevigata	RLG00000005150 RLG00000007126 RLG00000018754 RLG00000027626 RLG00000033700
rosa_multiflora	Rmu_co8179518.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271500
rosa_rugosa	Rorug06G0445700
rosa_samantha	Rh1BG320500 Rh1CG334500 Rh1DG351200 Rh6CG214000 Rh6DG203300 Rh7AG048400 Rh7BG048200 Rh7DG047600
rosa_wichuraiana	Rw0G021050 Rw7G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	538
AciI	CCGC	2 cut(s)	350, 730
AclWI	GGATC	5 cut(s)	10, 15, 81, 402, 471
AcoI	YGGCCR	1 cut(s)	518
AcsI	RAATTY	2 cut(s)	322, 424
AcuI	CTGAAG	2 cut(s)	194, 677
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	4 cut(s)	25, 176, 503, 538
AflII	CTTAAG	1 cut(s)	634
AgsI	TTSAA	2 cut(s)	328, 613
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	1 cut(s)	639
AluI	AGCT	1 cut(s)	639
Alw26I	GTCTC	2 cut(s)	53, 673
AlwI	GGATC	5 cut(s)	10, 15, 81, 402, 471
AoxI	GGCC	6 cut(s)	27, 283, 300, 335, 518, 723
ApaI	GGGCCC	1 cut(s)	287
ApoI	RAATTY	2 cut(s)	322, 424
ArsI	GACNNNNNNTTYG	2 cut(s)	307, 339
AspS9I	GGNCC	5 cut(s)	167, 275, 283, 284, 723
AsuC2I	CCSGG	2 cut(s)	304, 498
AvaII	GGWCC	2 cut(s)	167, 275
BaeGI	GKGCMC	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	287
BccI	CCATC	3 cut(s)	198, 265, 397
BceAI	ACGGC	4 cut(s)	20, 333, 505, 710
BciT130I	CCWGG	1 cut(s)	74
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	2 cut(s)	304, 498
BcoDI	GTCTC	2 cut(s)	53, 673
BfrI	CTTAAG	1 cut(s)	634
BisI	GCNGC	1 cut(s)	731
BlsI	GCNGC	1 cut(s)	732
Bme1390I	CCNGG	3 cut(s)	74, 304, 498
Bme18I	GGWCC	2 cut(s)	167, 275
BmgT120I	GGNCC	5 cut(s)	167, 275, 283, 284, 723
BmiI	GGNNCC	5 cut(s)	169, 276, 277, 285, 724
BmrFI	CCNGG	3 cut(s)	74, 304, 498
BmsI	GCATC	1 cut(s)	247
BpuEI	CTTGAG	1 cut(s)	610
BpuMI	CCSGG	2 cut(s)	304, 498
BsaHI	GRCGYC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	673
BsaJI	CCNNGG	2 cut(s)	24, 279
BsaWI	WCCGGW	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 176, 503, 538
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	628
BseBI	CCWGG	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	24, 279
BseGI	GGATG	4 cut(s)	358, 408, 493, 514
BseLI	CCNNNNNNNGG	4 cut(s)	25, 176, 503, 538
BseNI	ACTGG	1 cut(s)	628
BseRI	GAGGAG	2 cut(s)	71, 488
BseSI	GKGCMC	1 cut(s)	287
BshFI	GGCC	6 cut(s)	29, 285, 302, 337, 520, 725
BsiSI	CCGG	4 cut(s)	303, 338, 497, 575
BslFI	GGGAC	2 cut(s)	200, 261
BslI	CCNNNNNNNGG	4 cut(s)	25, 176, 503, 538
BsmAI	GTCTC	2 cut(s)	53, 673
BsmBI	CGTCTC	1 cut(s)	53
BsmFI	GGGAC	2 cut(s)	200, 261
BsnI	GGCC	6 cut(s)	29, 285, 302, 337, 520, 725
Bso31I	GGTCTC	1 cut(s)	673
Bsp120I	GGGCCC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	9 cut(s)	15, 20, 81, 86, 135, 174, 355, 394, 463
BspACI	CCGC	2 cut(s)	350, 730
BspANI	GGCC	6 cut(s)	29, 285, 302, 337, 520, 725
BspLI	GGNNCC	5 cut(s)	169, 276, 277, 285, 724
BspPI	GGATC	5 cut(s)	10, 15, 81, 402, 471
BspTI	CTTAAG	1 cut(s)	634
BspTNI	GGTCTC	1 cut(s)	673
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	628
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	24, 279
BssMI	GATC	9 cut(s)	15, 20, 81, 86, 135, 174, 355, 394, 463
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	4 cut(s)	72, 682, 693, 706
BstACI	GRCGYC	1 cut(s)	33
BstAFI	CTTAAG	1 cut(s)	634
BstC8I	GCNNGC	2 cut(s)	339, 548
BstF5I	GGATG	4 cut(s)	358, 408, 493, 514
BstKTI	GATC	9 cut(s)	18, 23, 84, 89, 138, 177, 358, 397, 466
BstMAI	GTCTC	2 cut(s)	53, 673
BstMBI	GATC	9 cut(s)	15, 20, 81, 86, 135, 174, 355, 394, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	347, 594
BstNI	CCWGG	1 cut(s)	74
BstSCI	CCNGG	3 cut(s)	72, 302, 496
BstSLI	GKGCMC	1 cut(s)	287
BstX2I	RGATCY	3 cut(s)	15, 86, 394
BstYI	RGATCY	3 cut(s)	15, 86, 394
BsuRI	GGCC	6 cut(s)	29, 285, 302, 337, 520, 725
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	4 cut(s)	358, 408, 493, 514
BtsIMutI	CAGTG	2 cut(s)	100, 635
Cac8I	GCNNGC	2 cut(s)	339, 548
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	5 cut(s)	167, 275, 283, 284, 723
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	157
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviAII	CATG	2 cut(s)	190, 598
CviQI	GTAC	1 cut(s)	157
DpnI	GATC	9 cut(s)	17, 22, 83, 88, 137, 176, 357, 396, 465
DpnII	GATC	9 cut(s)	15, 20, 81, 86, 135, 174, 355, 394, 463
EaeI	YGGCCR	1 cut(s)	518
Eam1104I	CTCTTC	4 cut(s)	72, 682, 693, 706
EarI	CTCTTC	4 cut(s)	72, 682, 693, 706
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	287
Eco31I	GGTCTC	1 cut(s)	673
Eco47I	GGWCC	2 cut(s)	167, 275
Eco57I	CTGAAG	2 cut(s)	194, 677
EcoO109I	RGGNCCY	2 cut(s)	275, 283
EcoRI	GAATTC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	53
FaeI	CATG	2 cut(s)	193, 601
FaiI	YATR	6 cut(s)	191, 373, 430, 471, 564, 599
FaqI	GGGAC	2 cut(s)	200, 261
FatI	CATG	2 cut(s)	189, 597
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	731
FokI	GGATG	4 cut(s)	365, 415, 480, 521
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	731
GluI	GCNGC	1 cut(s)	731
HaeIII	GGCC	6 cut(s)	29, 285, 302, 337, 520, 725
HapII	CCGG	4 cut(s)	303, 338, 497, 575
HgaI	GACGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	2 cut(s)	193, 601
HindIII	AAGCTT	1 cut(s)	637
HinfI	GANTC	2 cut(s)	64, 69
HpaII	CCGG	4 cut(s)	303, 338, 497, 575
Hpy166II	GTNNAC	2 cut(s)	40, 159
Hpy188I	TCNGA	9 cut(s)	20, 25, 86, 91, 167, 179, 223, 231, 673
Hpy188III	TCNNGA	2 cut(s)	8, 708
Hpy8I	GTNNAC	2 cut(s)	40, 159
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	7 cut(s)	192, 292, 301, 322, 385, 403, 652
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	2 cut(s)	150, 155
HpyCH4V	TGCA	4 cut(s)	365, 439, 546, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	347, 594
HpySE526I	ACGT	2 cut(s)	150, 155
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	193, 601
KflI	GGGWCCC	1 cut(s)	275
KroI	GCCGGC	1 cut(s)	337
KroNI	GCCGGC	1 cut(s)	339
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	9 cut(s)	15, 20, 81, 86, 135, 174, 355, 394, 463
LweI	GCATC	1 cut(s)	247
MaeII	ACGT	2 cut(s)	150, 155
MaeIII	GTNAC	4 cut(s)	95, 140, 151, 526
MalI	GATC	9 cut(s)	17, 22, 83, 88, 137, 176, 357, 396, 465
MboI	GATC	9 cut(s)	15, 20, 81, 86, 135, 174, 355, 394, 463
MboII	GAAGA	6 cut(s)	89, 699, 704, 707, 710, 723
MflI	RGATCY	3 cut(s)	15, 86, 394
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	4 cut(s)	181, 322, 424, 613
MmeI	TCCRAC	1 cut(s)	114
MroNI	GCCGGC	1 cut(s)	337
MseI	TTAA	2 cut(s)	50, 635
MspCI	CTTAAG	1 cut(s)	634
MspI	CCGG	4 cut(s)	303, 338, 497, 575
MspR9I	CCNGG	3 cut(s)	74, 304, 498
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	347, 594
NaeI	GCCGGC	1 cut(s)	339
NciI	CCSGG	2 cut(s)	304, 498
NdeII	GATC	9 cut(s)	15, 20, 81, 86, 135, 174, 355, 394, 463
NgoMIV	GCCGGC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	193, 601
NlaIV	GGNNCC	5 cut(s)	169, 276, 277, 285, 724
NmuCI	GTSAC	3 cut(s)	95, 151, 526
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PdiI	GCCGGC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	64, 69
PflMI	CCANNNNNTGG	1 cut(s)	538
PfoI	TCCNGGA	1 cut(s)	72
PkrI	GCNGC	1 cut(s)	732
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	5 cut(s)	169, 276, 277, 285, 724
PspOMI	GGGCCC	1 cut(s)	283
PspPI	GGNCC	5 cut(s)	167, 275, 283, 284, 723
PspPPI	RGGWCCY	1 cut(s)	275
PsrI	GAACNNNNNNTAC	2 cut(s)	140, 172
PsuI	RGATCY	3 cut(s)	15, 86, 394
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	50, 635
SatI	GCNGC	1 cut(s)	731
Sau3AI	GATC	9 cut(s)	15, 20, 81, 86, 135, 174, 355, 394, 463
Sau96I	GGNCC	5 cut(s)	167, 275, 283, 284, 723
ScrFI	CCNGG	3 cut(s)	74, 304, 498
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	9 cut(s)	153, 158, 312, 414, 518, 587, 641, 663, 707
SfaNI	GCATC	1 cut(s)	247
SinI	GGWCC	2 cut(s)	167, 275
SmlI	CTYRAG	2 cut(s)	589, 634
SmoI	CTYRAG	2 cut(s)	589, 634
Sse9I	AATT	4 cut(s)	181, 322, 424, 613
SsiI	CCGC	2 cut(s)	350, 730
StyD4I	CCNGG	3 cut(s)	72, 302, 496
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	2 cut(s)	153, 158
TaqI	TCGA	3 cut(s)	67, 215, 269
TasI	AATT	4 cut(s)	181, 322, 424, 613
TauI	GCSGC	1 cut(s)	733
TfiI	GAWTC	2 cut(s)	64, 69
Tru1I	TTAA	2 cut(s)	50, 635
Tru9I	TTAA	2 cut(s)	50, 635
TscAI	CASTG	2 cut(s)	100, 635
TseFI	GTSAC	3 cut(s)	95, 151, 526
Tsp45I	GTSAC	3 cut(s)	95, 151, 526
TspDTI	ATGAA	2 cut(s)	109, 417
TspGWI	ACGGA	1 cut(s)	456
TspRI	CASTG	2 cut(s)	100, 635
Van91I	CCANNNNNTGG	1 cut(s)	538
Vha464I	CTTAAG	1 cut(s)	634
VpaK11BI	GGWCC	2 cut(s)	167, 275
XapI	RAATTY	2 cut(s)	322, 424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.