Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005095

Physical Location & Seq

Genomic Coordinates Forward (+)

35570816 .. 35571244

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG214000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGCACCCAGATCAGTACCCGAACGTGACGTACACGCTCAGACCCAAGATCGGGAACTAGGACATGGAGAGAAGGCAGTGGCTTCAGTTGAATTGGGAACTTTGGGTATGGAGCTTGCTGGGTATTGGGCTAAGTTGCCTTTGATTAGGAAGCTGATGTTTTCGCATCCCGAGGTGGAGTGGATTTGGTGGATGGATAGTGATGCAATGTTTACTGATATGGTGTTTGAGATCCCATTGGGGAAGTATGACAAGCATAATCTTGTTATTCATGGCTACCCAGATTTGCTGCTTGATCAGAAGTCTTGGATTGCTTTGAACACTAGGAGTTTTTTGTTTAGGAATTGCCAGTGGTCTTTGGATTTGCTTGATGCTTGGGCTCCGATGGGTCTGAAGGAGCCGATAAGAGAGGAGGCCGGAAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

142

Amino Acids

16.47

Weight (kDa)

5.3

Isoelectric Point (pI)

25.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	37 - 133	1.9e-28	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74380 AT5G07720
fragaria_vesca	FvH4_5g14540 FvH4_5g14540
malus_domestica	MD06G1197600.v1.1 MD14G1205000.v1.1
prunus_persica	Prupe.5G198300_v2.0.a1
pyrus_communis	pycom14g16940
rosa_chinensis	RchiOBHm_Chr1g0355441 RchiOBHm_Chr6g0275691 RchiOBHm_Chr7g0182111 RchiOBHm_Chr7g0199921
rosa_laevigata	RLG00000005150 RLG00000007126 RLG00000018754 RLG00000027626 RLG00000033700
rosa_multiflora	Rmu_co8179518.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271500
rosa_rugosa	Rorug06G0445700
rosa_samantha	Rh1BG320500 Rh1CG334500 Rh1DG351200 Rh6CG214000 Rh6DG203300 Rh7AG048400 Rh7BG048200 Rh7DG047600
rosa_wichuraiana	Rw0G021050 Rw7G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	226
AcuI	CTGAAG	2 cut(s)	69, 413
AfaI	GTAC	2 cut(s)	18, 33
AfiI	CCNNNNNNNGG	2 cut(s)	51, 52
AgsI	TTSAA	2 cut(s)	92, 319
AluBI	AGCT	2 cut(s)	115, 154
AluI	AGCT	2 cut(s)	115, 154
AlwI	GGATC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	1 cut(s)	289
AvaI	CYCGRG	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	2 cut(s)	187, 379
BclI	TGATCA	1 cut(s)	295
BfaI	CTAG	2 cut(s)	59, 324
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
BmeT110I	CYCGRG	1 cut(s)	170
BmiI	GGNNCC	3 cut(s)	6, 381, 399
BmsI	GCATC	3 cut(s)	175, 193, 361
BsaJI	CCNNGG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 52
Bse1I	ACTGG	1 cut(s)	349
Bse3DI	GCAATG	1 cut(s)	213
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	166, 198
BseLI	CCNNNNNNNGG	2 cut(s)	51, 52
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	425
BseXI	GCAGC	1 cut(s)	276
BseYI	CCCAGC	1 cut(s)	119
BshFI	GGCC	1 cut(s)	416
BshNI	GGYRCC	1 cut(s)	4
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	417
BslI	CCNNNNNNNGG	2 cut(s)	51, 52
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	4 cut(s)	11, 49, 231, 295
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	3 cut(s)	6, 381, 399
BspPI	GGATC	1 cut(s)	226
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	4 cut(s)	11, 49, 231, 295
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	39, 132
BstF5I	GGATG	2 cut(s)	166, 198
BstKTI	GATC	4 cut(s)	14, 52, 234, 298
BstMBI	GATC	4 cut(s)	11, 49, 231, 295
BstV1I	GCAGC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	2 cut(s)	166, 198
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 356
Cac8I	GCNNGC	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	17, 32
CviAII	CATG	2 cut(s)	65, 272
CviJI	RGCY	8 cut(s)	83, 115, 131, 154, 276, 380, 400, 416
CviKI_1	RGCY	8 cut(s)	83, 115, 131, 154, 276, 380, 400, 416
CviQI	GTAC	2 cut(s)	17, 32
DdeI	CTNAG	2 cut(s)	39, 132
DpnI	GATC	4 cut(s)	13, 51, 233, 297
DpnII	GATC	4 cut(s)	11, 49, 231, 295
Eco24I	GRGCYC	1 cut(s)	382
Eco57I	CTGAAG	2 cut(s)	69, 413
Eco88I	CYCGRG	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	382
FaeI	CATG	2 cut(s)	68, 275
FaiI	YATR	6 cut(s)	66, 110, 221, 249, 258, 273
FatI	CATG	2 cut(s)	64, 271
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	290
FokI	GGATG	2 cut(s)	153, 205
FriOI	GRGCYC	1 cut(s)	382
Fsp4HI	GCNGC	1 cut(s)	290
FspBI	CTAG	2 cut(s)	59, 324
GluI	GCNGC	1 cut(s)	290
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	1 cut(s)	417
Hin1II	CATG	2 cut(s)	68, 275
HpaII	CCGG	1 cut(s)	417
Hpy166II	GTNNAC	2 cut(s)	34, 213
Hpy188I	TCNGA	4 cut(s)	42, 300, 384, 393
Hpy188III	TCNNGA	2 cut(s)	53, 170
Hpy8I	GTNNAC	2 cut(s)	34, 213
HpyAV	CCTTC	3 cut(s)	67, 388, 414
HpyCH4IV	ACGT	2 cut(s)	25, 30
HpyCH4V	TGCA	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	39, 132
HpySE526I	ACGT	2 cut(s)	25, 30
Hsp92II	CATG	2 cut(s)	68, 275
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	11, 49, 231, 295
LmnI	GCTCC	3 cut(s)	112, 385, 397
LpnPI	CCDG	4 cut(s)	22, 105, 294, 362
Lsp1109I	GCAGC	1 cut(s)	276
LweI	GCATC	3 cut(s)	175, 193, 361
MaeI	CTAG	2 cut(s)	59, 324
MaeII	ACGT	2 cut(s)	25, 30
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	4 cut(s)	13, 51, 233, 297
MboI	GATC	4 cut(s)	11, 49, 231, 295
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	2 cut(s)	92, 343
MnlI	CCTC	3 cut(s)	166, 403, 406
MspI	CCGG	1 cut(s)	417
NdeII	GATC	4 cut(s)	11, 49, 231, 295
NlaIII	CATG	2 cut(s)	68, 275
NlaIV	GGNNCC	3 cut(s)	6, 381, 399
NmuCI	GTSAC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	3 cut(s)	6, 381, 399
PsrI	GAACNNNNNNTAC	2 cut(s)	15, 47
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	2 cut(s)	18, 33
RsaNI	GTAC	2 cut(s)	17, 32
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	4 cut(s)	11, 49, 231, 295
SduI	GDGCHC	1 cut(s)	382
SetI	ASST	6 cut(s)	28, 33, 117, 156, 177, 425
SfaNI	GCATC	3 cut(s)	175, 193, 361
Sse9I	AATT	2 cut(s)	92, 343
SspMI	CTAG	2 cut(s)	59, 324
TaiI	ACGT	2 cut(s)	28, 33
TasI	AATT	2 cut(s)	92, 343
TscAI	CASTG	2 cut(s)	84, 356
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	2 cut(s)	84, 356
XspI	CTAG	2 cut(s)	59, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.