Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005095

Physical Location & Seq

Genomic Coordinates Reverse (-)

31061529 .. 31063109

Gene Structure 1581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033700

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGCTTTCGCATCCCGTGGTGGAGTGGATTTGGTGGATGGATAGTGATGTAATGTTTACTGATATGGTGTTTGAGATCCCATTGGGGAAGTATGACAAGCATAATCTTGTTATACATGGCTACCCGGATTTGCTGCTTGATCAGAAGTCTTGGACTGCTTTGAACACTAGGAGTTTTTTGTTTAGGAATTGCCAGTGGTCTTTGGATTTGCTTAATGCTTGGGCTCCGATGGTTTGGACACCGCCCACCCAAAACCAGCCCTGCAATAGACCCTCCAACCAATACCAGGCCCAGCTGGCCCAATTGGTCAAAATTGGTATGGGTAGTCTGCTTCCACCCCAACCAAACAAGCCGCCGCCTCCGCCTTCGATCATCGCCGAAGAGACTGCACCATTACCCCAGCCACCCGTCTCAACAGACCAGCAACTGCGCAACAGACATGCCAATGCCGCTACCTTGATCACCACCACTAACGTCAGAACAGCCACCTCGTCCACTGACGAAGCCACCGCATCCACCACCGGCCTTGGACCGAAAAGTACAGAGCCAGTAGCCTACCACCGGCCATCCTCTTCCCGTGTTATCCTCGTCATCAGCGCTGACCCAAGACCCCAGGGGCTGATCACCACCACTACCGGCAAGACCCAACGCACCAAAACGTCCGATAATCTCGGGAAGAAAATCCCAGTACCGCCTGTCACAAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

237

Amino Acids

26.13

Weight (kDa)

9.14

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	1 - 103	3.4e-18	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74380 AT5G07720
fragaria_vesca	FvH4_5g14540 FvH4_5g14540
malus_domestica	MD06G1197600.v1.1 MD14G1205000.v1.1
prunus_persica	Prupe.5G198300_v2.0.a1
pyrus_communis	pycom14g16940
rosa_chinensis	RchiOBHm_Chr1g0355441 RchiOBHm_Chr6g0275691 RchiOBHm_Chr7g0182111 RchiOBHm_Chr7g0199921
rosa_laevigata	RLG00000005150 RLG00000007126 RLG00000018754 RLG00000027626 RLG00000033700
rosa_multiflora	Rmu_co8179518.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271500
rosa_rugosa	Rorug06G0445700
rosa_samantha	Rh1BG320500 Rh1CG334500 Rh1DG351200 Rh6CG214000 Rh6DG203300 Rh7AG048400 Rh7BG048200 Rh7DG047600
rosa_wichuraiana	Rw0G021050 Rw7G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	431
AciI	CCGC	7 cut(s)	242, 353, 356, 362, 450, 510, 692
AclWI	GGATC	1 cut(s)	70
AcoI	YGGCCR	1 cut(s)	563
AfaI	GTAC	2 cut(s)	541, 690
AfeI	AGCGCT	1 cut(s)	598
AfiI	CCNNNNNNNGG	2 cut(s)	286, 561
AgsI	TTSAA	1 cut(s)	163
AjnI	CCWGG	2 cut(s)	285, 612
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	2 cut(s)	377, 415
AlwI	GGATC	1 cut(s)	70
AlwNI	CAGNNNCTG	2 cut(s)	427, 619
Ama87I	CYCGRG	1 cut(s)	671
Aor51HI	AGCGCT	1 cut(s)	598
AoxI	GGCC	4 cut(s)	288, 297, 523, 563
ApeKI	GCWGC	1 cut(s)	133
AspLEI	GCGC	2 cut(s)	432, 599
AspS9I	GGNCC	3 cut(s)	289, 298, 530
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	454, 616
AvaI	CYCGRG	1 cut(s)	671
AvaII	GGWCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	3 cut(s)	31, 223, 574
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BciT130I	CCWGG	2 cut(s)	287, 614
BclI	TGATCA	3 cut(s)	139, 459, 621
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	2 cut(s)	377, 415
BfaI	CTAG	1 cut(s)	168
BfoI	RGCGCY	1 cut(s)	600
BglI	GCCNNNNNGGC	1 cut(s)	296
BisI	GCNGC	4 cut(s)	134, 353, 356, 450
BlsI	GCNGC	4 cut(s)	135, 354, 357, 451
Bme1390I	CCNGG	3 cut(s)	125, 287, 614
Bme18I	GGWCC	1 cut(s)	530
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	3 cut(s)	289, 298, 530
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	3 cut(s)	125, 287, 614
BmrI	ACTGGG	1 cut(s)	680
BmsI	GCATC	2 cut(s)	19, 521
BmuI	ACTGGG	1 cut(s)	680
BpuMI	CCSGG	1 cut(s)	125
BsaJI	CCNNGG	4 cut(s)	15, 526, 612, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 561
Bse118I	RCCGGY	3 cut(s)	521, 561, 635
Bse1I	ACTGG	3 cut(s)	193, 548, 686
BseBI	CCWGG	2 cut(s)	287, 614
BseDI	CCNNGG	4 cut(s)	15, 526, 612, 613
BseGI	GGATG	4 cut(s)	10, 42, 512, 566
BseLI	CCNNNNNNNGG	2 cut(s)	286, 561
BseNI	ACTGG	3 cut(s)	193, 548, 686
BseXI	GCAGC	1 cut(s)	120
BseYI	CCCAGC	2 cut(s)	291, 399
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	4 cut(s)	290, 299, 525, 565
BsiHKCI	CYCGRG	1 cut(s)	671
BsiSI	CCGG	4 cut(s)	125, 522, 562, 636
BslI	CCNNNNNNNGG	2 cut(s)	286, 561
BsmAI	GTCTC	2 cut(s)	377, 415
BsmBI	CGTCTC	1 cut(s)	415
BsnI	GGCC	4 cut(s)	290, 299, 525, 565
BsoBI	CYCGRG	1 cut(s)	671
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	5 cut(s)	75, 139, 369, 459, 621
BspACI	CCGC	7 cut(s)	242, 353, 356, 362, 450, 510, 692
BspANI	GGCC	4 cut(s)	290, 299, 525, 565
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	70
BsrFI	RCCGGY	3 cut(s)	521, 561, 635
BsrI	ACTGG	3 cut(s)	193, 548, 686
BssAI	RCCGGY	3 cut(s)	521, 561, 635
BssECI	CCNNGG	4 cut(s)	15, 526, 612, 613
BssMI	GATC	5 cut(s)	75, 139, 369, 459, 621
BssT1I	CCWWGG	1 cut(s)	526
Bst2UI	CCWGG	2 cut(s)	287, 614
Bst6I	CTCTTC	2 cut(s)	375, 577
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	708
BstDSI	CCRYGG	1 cut(s)	15
BstF5I	GGATG	4 cut(s)	10, 42, 512, 566
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	2 cut(s)	432, 599
BstKTI	GATC	5 cut(s)	78, 142, 372, 462, 624
BstMAI	GTCTC	2 cut(s)	377, 415
BstMBI	GATC	5 cut(s)	75, 139, 369, 459, 621
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 361, 449
BstNI	CCWGG	2 cut(s)	287, 614
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	3 cut(s)	123, 285, 612
BstV1I	GCAGC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuRI	GGCC	4 cut(s)	290, 299, 525, 565
BtgI	CCRYGG	1 cut(s)	15
BtgZI	GCGATG	1 cut(s)	358
BtsCI	GGATG	4 cut(s)	10, 42, 512, 566
BtsIMutI	CAGTG	2 cut(s)	200, 495
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	2 cut(s)	427, 619
CfoI	GCGC	2 cut(s)	432, 599
Cfr10I	RCCGGY	3 cut(s)	521, 561, 635
Cfr13I	GGNCC	3 cut(s)	289, 298, 530
Csp6I	GTAC	2 cut(s)	540, 689
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	2 cut(s)	116, 440
CviQI	GTAC	2 cut(s)	540, 689
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	5 cut(s)	77, 141, 371, 461, 623
DpnII	GATC	5 cut(s)	75, 139, 369, 459, 621
EaeI	YGGCCR	1 cut(s)	563
Eam1104I	CTCTTC	2 cut(s)	375, 577
EarI	CTCTTC	2 cut(s)	375, 577
EciI	GGCGGA	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	526
Eco24I	GRGCYC	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	530
Eco47III	AGCGCT	1 cut(s)	598
Eco88I	CYCGRG	1 cut(s)	671
EcoRII	CCWGG	2 cut(s)	285, 612
EcoT14I	CCWWGG	1 cut(s)	526
EcoT38I	GRGCYC	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	526
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	2 cut(s)	119, 443
FaiI	YATR	7 cut(s)	65, 93, 102, 113, 117, 320, 441
FatI	CATG	2 cut(s)	115, 439
FbaI	TGATCA	3 cut(s)	139, 459, 621
Fnu4HI	GCNGC	4 cut(s)	134, 353, 356, 450
FokI	GGATG	3 cut(s)	49, 499, 553
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	4 cut(s)	134, 353, 356, 450
FspBI	CTAG	1 cut(s)	168
FspI	TGCGCA	1 cut(s)	431
GlaI	GCGC	2 cut(s)	431, 598
GluI	GCNGC	4 cut(s)	134, 353, 356, 450
GsaI	CCCAGC	2 cut(s)	295, 403
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	4 cut(s)	290, 299, 525, 565
HapII	CCGG	4 cut(s)	125, 522, 562, 636
HhaI	GCGC	2 cut(s)	432, 599
Hin1II	CATG	2 cut(s)	119, 443
Hin6I	GCGC	2 cut(s)	430, 597
HinP1I	GCGC	2 cut(s)	430, 597
HpaII	CCGG	4 cut(s)	125, 522, 562, 636
HphI	GGTGA	2 cut(s)	454, 616
Hpy166II	GTNNAC	2 cut(s)	57, 495
Hpy188I	TCNGA	4 cut(s)	144, 228, 479, 664
Hpy188III	TCNNGA	1 cut(s)	673
Hpy8I	GTNNAC	2 cut(s)	57, 495
HpyAV	CCTTC	1 cut(s)	375
HpyCH4IV	ACGT	2 cut(s)	474, 659
HpyCH4V	TGCA	2 cut(s)	264, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 361, 449
HpyF3I	CTNAG	1 cut(s)	708
HpySE526I	ACGT	2 cut(s)	474, 659
Hsp92II	CATG	2 cut(s)	119, 443
HspAI	GCGC	2 cut(s)	430, 597
Ksp22I	TGATCA	3 cut(s)	139, 459, 621
Kzo9I	GATC	5 cut(s)	75, 139, 369, 459, 621
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	2 cut(s)	19, 521
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	2 cut(s)	474, 659
MaeIII	GTNAC	1 cut(s)	697
MalI	GATC	5 cut(s)	77, 141, 371, 461, 623
MboI	GATC	5 cut(s)	75, 139, 369, 459, 621
MboII	GAAGA	3 cut(s)	392, 564, 688
MfeI	CAATTG	1 cut(s)	302
MflI	RGATCY	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	3 cut(s)	187, 302, 312
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	283, 369, 499, 580, 596
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	4 cut(s)	125, 522, 562, 636
MspR9I	CCNGG	3 cut(s)	125, 287, 614
MunI	CAATTG	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	287, 614
MwoI	GCNNNNNNNGC	3 cut(s)	296, 361, 449
NciI	CCSGG	1 cut(s)	125
NdeII	GATC	5 cut(s)	75, 139, 369, 459, 621
NlaIII	CATG	2 cut(s)	119, 443
NlaIV	GGNNCC	1 cut(s)	225
NmuCI	GTSAC	1 cut(s)	697
NsbI	TGCGCA	1 cut(s)	431
NspI	RCATGY	1 cut(s)	443
PasI	CCCWGGG	1 cut(s)	613
PkrI	GCNGC	4 cut(s)	135, 354, 357, 451
Psp6I	CCWGG	2 cut(s)	285, 612
PspFI	CCCAGC	2 cut(s)	291, 399
PspGI	CCWGG	2 cut(s)	285, 612
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	3 cut(s)	289, 298, 530
PstNI	CAGNNNCTG	2 cut(s)	427, 619
PsuI	RGATCY	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	295
RsaI	GTAC	2 cut(s)	541, 690
RsaNI	GTAC	2 cut(s)	540, 689
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	4 cut(s)	134, 353, 356, 450
Sau3AI	GATC	5 cut(s)	75, 139, 369, 459, 621
Sau96I	GGNCC	3 cut(s)	289, 298, 530
ScrFI	CCNGG	3 cut(s)	125, 287, 614
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	6 cut(s)	297, 458, 477, 491, 662, 709
SfaNI	GCATC	2 cut(s)	19, 521
SfiI	GGCCNNNNNGGCC	1 cut(s)	296
SinI	GGWCC	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	3 cut(s)	187, 302, 312
SsiI	CCGC	7 cut(s)	242, 353, 356, 362, 450, 510, 692
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	123, 285, 612
StyI	CCWWGG	1 cut(s)	526
TaiI	ACGT	2 cut(s)	477, 662
TaqI	TCGA	1 cut(s)	368
TaqII	GACCGA	1 cut(s)	547
TasI	AATT	3 cut(s)	187, 302, 312
TatI	WGTACW	1 cut(s)	539
TauI	GCSGC	3 cut(s)	355, 358, 452
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	200, 502
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	697
TspRI	CASTG	2 cut(s)	200, 502
VpaK11BI	GGWCC	1 cut(s)	530
XceI	RCATGY	1 cut(s)	443
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.