Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005095

Physical Location & Seq

Genomic Coordinates Forward (+)

36206986 .. 36207435

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG203300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACTCGGATGAGTTCATCAATGGCACCCAGATCAGTACCCGAACGTGACGTACACGCTCAGACCCAAGATCGGGAACTGGGACACGGAGAGAAGGCAGTGGCTTCAGTTGAATTGGGAACTTTGGGTATGGAGCTTGCTGGGTATTGGGTCAAGTTGCCTTTGATTAGGAAGCTGATGTTTTCGCATCCTGAGGTGGAGTGGATTTGGTGGATGGATAGTGATGCAATGTTTACTGATATGGTGTTTGAGATCCCATTGGGGAAGTATGACAAGCATAATCTTGTTATTCATGGCTACCCAGATTTGCTGCTTGATCAGAAGTCTTGGATTGCTTTGAACACTAGGAGTTTTTTGTTTAGGAATTGCCAGTGGTCTTTGGATTTGCTTGATGCTTGGGCTCCGATGGGTCTGAAGGAGCTGATAAGAGAGGAGGCCGGAAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

149

Amino Acids

17.29

Weight (kDa)

5.5

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	44 - 139	5.7e-28	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74380 AT5G07720
fragaria_vesca	FvH4_5g14540 FvH4_5g14540
malus_domestica	MD06G1197600.v1.1 MD14G1205000.v1.1
prunus_persica	Prupe.5G198300_v2.0.a1
pyrus_communis	pycom14g16940
rosa_chinensis	RchiOBHm_Chr1g0355441 RchiOBHm_Chr6g0275691 RchiOBHm_Chr7g0182111 RchiOBHm_Chr7g0199921
rosa_laevigata	RLG00000005150 RLG00000007126 RLG00000018754 RLG00000027626 RLG00000033700
rosa_multiflora	Rmu_co8179518.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271500
rosa_rugosa	Rorug06G0445700
rosa_samantha	Rh1BG320500 Rh1CG334500 Rh1DG351200 Rh6CG214000 Rh6DG203300 Rh7AG048400 Rh7BG048200 Rh7DG047600
rosa_wichuraiana	Rw0G021050 Rw7G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AclWI	GGATC	1 cut(s)	247
AcuI	CTGAAG	2 cut(s)	90, 434
AfaI	GTAC	2 cut(s)	39, 54
AfiI	CCNNNNNNNGG	2 cut(s)	72, 73
AgsI	TTSAA	2 cut(s)	113, 340
AluBI	AGCT	3 cut(s)	136, 175, 421
AluI	AGCT	3 cut(s)	136, 175, 421
AlwI	GGATC	1 cut(s)	247
AoxI	GGCC	1 cut(s)	435
ApeKI	GCWGC	1 cut(s)	310
AxyI	CCTNAGG	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	2 cut(s)	208, 400
BclI	TGATCA	1 cut(s)	316
BfaI	CTAG	1 cut(s)	345
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
BmiI	GGNNCC	2 cut(s)	27, 402
BmrI	ACTGGG	1 cut(s)	89
BmsI	GCATC	3 cut(s)	196, 214, 382
BmuI	ACTGGG	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 73
Bse1I	ACTGG	2 cut(s)	84, 370
Bse21I	CCTNAGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	234
BseGI	GGATG	3 cut(s)	15, 187, 219
BseLI	CCNNNNNNNGG	2 cut(s)	72, 73
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	2 cut(s)	74, 183
BseNI	ACTGG	2 cut(s)	84, 370
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	297
BseYI	CCCAGC	1 cut(s)	140
BshFI	GGCC	1 cut(s)	437
BshNI	GGYRCC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	72, 73
BsmFI	GGGAC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	4 cut(s)	32, 70, 252, 316
BspANI	GGCC	1 cut(s)	437
BspCNI	CTCAG	2 cut(s)	73, 184
BspLI	GGNNCC	2 cut(s)	27, 402
BspPI	GGATC	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	234
BsrI	ACTGG	2 cut(s)	84, 370
BssMI	GATC	4 cut(s)	32, 70, 252, 316
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	60, 192
BstF5I	GGATG	3 cut(s)	15, 187, 219
BstKTI	GATC	4 cut(s)	35, 73, 255, 319
BstMBI	GATC	4 cut(s)	32, 70, 252, 316
BstV1I	GCAGC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
Bsu36I	CCTNAGG	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	437
BtsCI	GGATG	3 cut(s)	15, 187, 219
BtsI	GCAGTG	1 cut(s)	105
BtsIMutI	CAGTG	2 cut(s)	105, 377
Cac8I	GCNNGC	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	38, 53
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	7 cut(s)	104, 136, 175, 297, 401, 421, 437
CviKI_1	RGCY	7 cut(s)	104, 136, 175, 297, 401, 421, 437
CviQI	GTAC	2 cut(s)	38, 53
DdeI	CTNAG	2 cut(s)	60, 192
DpnI	GATC	4 cut(s)	34, 72, 254, 318
DpnII	GATC	4 cut(s)	32, 70, 252, 316
Eco24I	GRGCYC	1 cut(s)	403
Eco57I	CTGAAG	2 cut(s)	90, 434
Eco81I	CCTNAGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	403
FaeI	CATG	1 cut(s)	296
FaiI	YATR	5 cut(s)	131, 242, 270, 279, 294
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	3 cut(s)	22, 174, 226
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	311
GsaI	CCCAGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	437
HapII	CCGG	1 cut(s)	438
Hin1II	CATG	1 cut(s)	296
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	438
Hpy166II	GTNNAC	2 cut(s)	55, 234
Hpy188I	TCNGA	5 cut(s)	9, 63, 321, 405, 414
Hpy188III	TCNNGA	2 cut(s)	74, 191
Hpy8I	GTNNAC	2 cut(s)	55, 234
HpyAV	CCTTC	3 cut(s)	88, 409, 435
HpyCH4IV	ACGT	2 cut(s)	46, 51
HpyCH4V	TGCA	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	60, 192
HpySE526I	ACGT	2 cut(s)	46, 51
Hsp92II	CATG	1 cut(s)	296
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	32, 70, 252, 316
LmnI	GCTCC	3 cut(s)	133, 406, 418
LpnPI	CCDG	6 cut(s)	43, 65, 126, 204, 315, 383
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	3 cut(s)	196, 214, 382
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	2 cut(s)	46, 51
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	4 cut(s)	34, 72, 254, 318
MboI	GATC	4 cut(s)	32, 70, 252, 316
MflI	RGATCY	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	2 cut(s)	113, 364
MnlI	CCTC	3 cut(s)	187, 424, 427
MspI	CCGG	1 cut(s)	438
NdeII	GATC	4 cut(s)	32, 70, 252, 316
NlaIII	CATG	1 cut(s)	296
NlaIV	GGNNCC	2 cut(s)	27, 402
NmuCI	GTSAC	1 cut(s)	47
PkrI	GCNGC	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	27, 402
PsrI	GAACNNNNNNTAC	2 cut(s)	36, 68
PsuI	RGATCY	1 cut(s)	252
RsaI	GTAC	2 cut(s)	39, 54
RsaNI	GTAC	2 cut(s)	38, 53
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	4 cut(s)	32, 70, 252, 316
SduI	GDGCHC	1 cut(s)	403
SetI	ASST	7 cut(s)	49, 54, 138, 177, 198, 423, 446
SfaNI	GCATC	3 cut(s)	196, 214, 382
Sse9I	AATT	2 cut(s)	113, 364
SspMI	CTAG	1 cut(s)	345
TaiI	ACGT	2 cut(s)	49, 54
TasI	AATT	2 cut(s)	113, 364
TscAI	CASTG	2 cut(s)	105, 377
TseFI	GTSAC	1 cut(s)	47
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	6, 281
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	2 cut(s)	105, 377
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.