FvH4_5g14540

Glycosyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
8233547 .. 8236128
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g14540.t1

Sequence Viewer

Length: 1371 bp
ATGGGCCAGGACGGTTTCATATCGGCCCAGAAGCGCACCTCCAGCGGCCTCCCCACCACCGCCGCCGCCGCCGCCGGCCGAGCATCCCGCCCGGCCCTCCCGCGCGGCCGCCAGATCCAGAAGACCTTCAACAACATCAAAATCACCATCCTCTGCGGCTTCGTCACCATCCTCGTCCTACGTGGCACCATCGGCGTCGGCAACCTCGGAACCTCCGACGCCGACGCCGTCAACCAGAACTTAATCGAAGAGACCAACCGGATCCTCGCCGAGATCCGCTCCGACGCCGACCCCAACGACCCGGACGAGTTCCTCAACGGCACTCAGATCACCTCTAACCCCAACGTGACCTACACGCTCGGCCCCAAGATCGGAAACTGGGACTCCGAGCGAGCCCAATGGCTTCAGTCCAACCCGGAGTTTCCGAACTTGGTGAACGGTAAGCCTCGGGTTCTGTTGGTTACCGGGTCGCCGCCTAAGCCCTGTGATAACCCGATTGGGGATCATTATCTGTTGAAGGCTATAAAGAACAAGATTGATTATTGTAGGCTTCATGGGATTGAGATTGTTTATAATTTAGCTCATTTAGATATGGAGCTGGCCGGGTATTGGGCCAAGTTGCCTCTAATTAGGAAGCTGATGCTTTCGCACCCCGAGGTGGAGTGGATTTGGTGGATGGATAGTGATGCAATGTTTACTGATATGGTGTTTGAGATCCCGTTGGCCAAGTATGACGAGCATAATCTTGTGATTCATGGGTATCCGGATTTGTTGTTTGATCAGAAGTCTTGGATTGCTTTGAATACGGGGAGTTTCTTGTTTAGGAATTGCCAGTGGTCTTTGGATTTGCTGGATGCTTGGGCTCCGATGGGGCCTAAGGGGCCGATTAGGGAGGAGGCCGGGAAGGTTTTGACGGCCAATTTGAAGGGGAGGCCGGCGTTTGAGGCGGATGATCAGTCTGCATTGATATATTTGTTGCTGTCGCAGAAGGATCTGTGGATGGAGAAGGTTTTCGTGGAGAATTCGTACTACTTGCATGGATATTGGGCTGGATTGGTGGATCGGTATGAGGAGATGATAGAGAAGTATCATCCGGGATTGGGGGATGAGAGGTGGCCGTTTGTGACACATTTTGTGGGTTGCAAGCCTTGTGGGAGTTATGGGGATTATCCGGTGGAGAGGTGCTTGAGCAGCATGGAGAGGGCTTTTAATTTTGCTGATAACCAGGTGCTTAAGCTTTACGGGTTTAGGCACAGGGGCTTGTTGAGCCCTAAGATCAAGAGGATCAGGAATGAGTCGGCCACTCCTTTGGAGGCTGTCGACAAGTTTGATATTCGGCGGCATCCAGTGCAGGGTGGATCGCACAGCTAG

Protein Analysis

457

Amino Acids

51.46

Weight (kDa)

6.2

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_34 PF05637 148 - 386 5.1e-64 galactosyl transferase GMA12/MNN10 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
AccB1I GGYRCC 1 cut(s) 185
AccBSI CCGCTC 1 cut(s) 279
AccI GTMKAC 1 cut(s) 1320
AccII CGCG 2 cut(s) 103, 105
AccIII TCCGGA 1 cut(s) 763
AcoI YGGCCR 7 cut(s) 76, 106, 600, 723, 915, 1115, 1299
AcsI RAATTY 1 cut(s) 1021
AcuI CTGAAG 1 cut(s) 389
AcyI GRCGYC 4 cut(s) 195, 219, 225, 285
AfaI GTAC 1 cut(s) 1028
AfiI CCNNNNNNNGG 6 cut(s) 371, 499, 609, 658, 1100, 1352
AflII CTTAAG 1 cut(s) 1232
AgsI TTSAA 4 cut(s) 130, 517, 802, 925
AjnI CCWGG 2 cut(s) 6, 1224
AluBI AGCT 5 cut(s) 581, 598, 637, 1237, 1368
AluI AGCT 5 cut(s) 581, 598, 637, 1237, 1368
Alw26I GTCTC 1 cut(s) 245
Ama87I CYCGRG 2 cut(s) 447, 653
Aor13HI TCCGGA 1 cut(s) 763
ApeKI GCWGC 1 cut(s) 1191
ApoI RAATTY 1 cut(s) 1021
ArsI GACNNNNNNTTYG 2 cut(s) 904, 936
Asp700I GAANNNNTTC 2 cut(s) 125, 1010
AspLEI GCGC 2 cut(s) 36, 105
AspS9I GGNCC 7 cut(s) 4, 25, 94, 362, 612, 872, 881
AsuC2I CCSGG 7 cut(s) 92, 302, 416, 466, 604, 901, 1095
AsuHPI GGTGA 4 cut(s) 136, 157, 322, 445
AvaI CYCGRG 2 cut(s) 447, 653
AxyI CCTNAGG 1 cut(s) 876
BalI TGGCCA 1 cut(s) 725
BamHI GGATCC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 3 cut(s) 397, 865, 1271
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 1203
BccI CCATC 6 cut(s) 155, 176, 197, 670, 862, 994
BceAI ACGGC 4 cut(s) 212, 334, 930, 1102
BciT130I CCWGG 2 cut(s) 8, 1226
BciVI GTATCC 1 cut(s) 771
BclI TGATCA 2 cut(s) 778, 952
BcnI CCSGG 7 cut(s) 92, 302, 416, 466, 604, 901, 1095
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 1369
BfrI CTTAAG 1 cut(s) 1232
BfuI GTATCC 1 cut(s) 771
BglI GCCNNNNNGGC 1 cut(s) 880
Bme1390I CCNGG 9 cut(s) 8, 92, 302, 416, 466, 604, 901, 1095, 1226
BmeT110I CYCGRG 2 cut(s) 447, 653
BmgT120I GGNCC 7 cut(s) 4, 25, 94, 362, 612, 872, 881
BmiI GGNNCC 7 cut(s) 187, 211, 263, 364, 864, 873, 882
BmrFI CCNGG 9 cut(s) 8, 92, 302, 416, 466, 604, 901, 1095, 1226
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 5 cut(s) 92, 630, 676, 844, 1351
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 263, 295
BpmI CTGGAG 1 cut(s) 25
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 1207
BpuMI CCSGG 7 cut(s) 92, 302, 416, 466, 604, 901, 1095
BsaAI YACGTR 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 507
BsaHI GRCGYC 4 cut(s) 195, 219, 225, 285
BsaI GGTCTC 1 cut(s) 245
BsaJI CCNNGG 3 cut(s) 205, 446, 654
BsaWI WCCGGW 3 cut(s) 258, 763, 1171
BsaXI ACNNNNNCTCC 4 cut(s) 368, 398, 1010, 1040
Bsc4I CCNNNNNNNGG 6 cut(s) 371, 499, 609, 658, 1100, 1352
Bse118I RCCGGY 2 cut(s) 74, 934
Bse1I ACTGG 3 cut(s) 383, 832, 1346
Bse21I CCTNAGG 1 cut(s) 876
Bse3DI GCAATG 1 cut(s) 696
Bse8I GATNNNNATC 1 cut(s) 507
BseAI TCCGGA 1 cut(s) 763
BseBI CCWGG 2 cut(s) 8, 1226
BseDI CCNNGG 3 cut(s) 205, 446, 654
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 6 cut(s) 371, 499, 609, 658, 1100, 1352
BseMI GCAATG 1 cut(s) 696
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 3 cut(s) 383, 832, 1346
BseRI GAGGAG 2 cut(s) 908, 1085
BseX3I CGGCCG 2 cut(s) 76, 106
BseXI GCAGC 1 cut(s) 1203
BsgI GTGCAG 1 cut(s) 1370
Bsh1236I CGCG 2 cut(s) 103, 105
Bsh1285I CGRYCG 2 cut(s) 79, 109
BshNI GGYRCC 1 cut(s) 185
BsiEI CGRYCG 2 cut(s) 79, 109
BsiHKCI CYCGRG 2 cut(s) 447, 653
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 6 cut(s) 371, 499, 609, 658, 1100, 1352
BsmAI GTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 395
Bso31I GGTCTC 1 cut(s) 245
BsoBI CYCGRG 2 cut(s) 447, 653
Bsp1286I GDGCHC 3 cut(s) 397, 865, 1271
Bsp13I TCCGGA 1 cut(s) 763
BspCNI CTCAG 1 cut(s) 337
BspEI TCCGGA 1 cut(s) 763
BspFNI CGCG 2 cut(s) 103, 105
BspLI GGNNCC 7 cut(s) 187, 211, 263, 364, 864, 873, 882
BspT107I GGYRCC 1 cut(s) 185
BspTI CTTAAG 1 cut(s) 1232
BspTNI GGTCTC 1 cut(s) 245
BsrBI CCGCTC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 696
BsrFI RCCGGY 2 cut(s) 74, 934
BsrI ACTGG 3 cut(s) 383, 832, 1346
BssAI RCCGGY 2 cut(s) 74, 934
BssECI CCNNGG 3 cut(s) 205, 446, 654
BssNI GRCGYC 4 cut(s) 195, 219, 225, 285
Bst2UI CCWGG 2 cut(s) 8, 1226
Bst4CI ACNGT 2 cut(s) 14, 440
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 4 cut(s) 195, 219, 225, 285
BstAFI CTTAAG 1 cut(s) 1232
BstAPI GCANNNNNTGC 1 cut(s) 1348
BstBAI YACGTR 1 cut(s) 182
BstC8I GCNNGC 5 cut(s) 76, 393, 600, 936, 1145
BstDEI CTNAG 4 cut(s) 324, 477, 876, 1272
BstEII GGTNACC 1 cut(s) 460
BstFNI CGCG 2 cut(s) 103, 105
BstHHI GCGC 2 cut(s) 36, 105
BstMAI GTCTC 1 cut(s) 245
BstMCI CGRYCG 2 cut(s) 79, 109
BstNI CCWGG 2 cut(s) 8, 1226
BstPI GGTNACC 1 cut(s) 460
BstSCI CCNGG 9 cut(s) 6, 90, 300, 414, 464, 602, 899, 1093, 1224
BstUI CGCG 2 cut(s) 103, 105
BstV1I GCAGC 1 cut(s) 1203
BstV2I GAAGAC 1 cut(s) 128
BstX2I RGATCY 5 cut(s) 114, 261, 273, 714, 991
BstXI CCANNNNNNTGG 1 cut(s) 1309
BstYI RGATCY 5 cut(s) 114, 261, 273, 714, 991
BstZI CGGCCG 2 cut(s) 76, 106
Bsu36I CCTNAGG 1 cut(s) 876
BsuI GTATCC 1 cut(s) 771
BtsIMutI CAGTG 2 cut(s) 839, 1353
Cac8I GCNNGC 5 cut(s) 76, 393, 600, 936, 1145
CciNI GCGGCCGC 1 cut(s) 106
CfoI GCGC 2 cut(s) 36, 105
Cfr10I RCCGGY 2 cut(s) 74, 934
Cfr13I GGNCC 7 cut(s) 4, 25, 94, 362, 612, 872, 881
CseI GACGC 4 cut(s) 184, 227, 233, 293
CsiI ACCWGGT 1 cut(s) 1224
Csp6I GTAC 1 cut(s) 1027
CspCI CAANNNNNGTGG 2 cut(s) 1132, 1167
CviAII CATG 4 cut(s) 554, 755, 1037, 1195
CviQI GTAC 1 cut(s) 1027
DdeI CTNAG 4 cut(s) 324, 477, 876, 1272
EaeI YGGCCR 7 cut(s) 76, 106, 600, 723, 915, 1115, 1299
EagI CGGCCG 2 cut(s) 76, 106
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 962
EclXI CGGCCG 2 cut(s) 76, 106
Eco24I GRGCYC 3 cut(s) 397, 865, 1271
Eco31I GGTCTC 1 cut(s) 245
Eco52I CGGCCG 2 cut(s) 76, 106
Eco57I CTGAAG 1 cut(s) 389
Eco81I CCTNAGG 1 cut(s) 876
Eco88I CYCGRG 2 cut(s) 447, 653
Eco91I GGTNACC 1 cut(s) 460
EcoO109I RGGNCCY 1 cut(s) 872
EcoO65I GGTNACC 1 cut(s) 460
EcoRI GAATTC 1 cut(s) 1021
EcoRII CCWGG 2 cut(s) 6, 1224
EcoT38I GRGCYC 3 cut(s) 397, 865, 1271
FaeI CATG 4 cut(s) 557, 758, 1040, 1198
FaqI GGGAC 1 cut(s) 395
FatI CATG 4 cut(s) 553, 754, 1036, 1194
FauI CCCGC 2 cut(s) 95, 108
FbaI TGATCA 2 cut(s) 778, 952
FblI GTMKAC 1 cut(s) 1320
FriOI GRGCYC 3 cut(s) 397, 865, 1271
FspBI CTAG 1 cut(s) 1369
GlaI GCGC 2 cut(s) 35, 104
GsuI CTGGAG 1 cut(s) 25
HgaI GACGC 4 cut(s) 184, 227, 233, 293
HhaI GCGC 2 cut(s) 36, 105
Hin1I GRCGYC 4 cut(s) 195, 219, 225, 285
Hin1II CATG 4 cut(s) 557, 758, 1040, 1198
Hin6I GCGC 2 cut(s) 34, 103
HinP1I GCGC 2 cut(s) 34, 103
HincII GTYRAC 2 cut(s) 232, 1321
HindII GTYRAC 2 cut(s) 232, 1321
HindIII AAGCTT 1 cut(s) 1235
HinfI GANTC 3 cut(s) 383, 751, 1295
HphI GGTGA 4 cut(s) 136, 157, 322, 445
Hpy166II GTNNAC 4 cut(s) 232, 436, 696, 1321
Hpy188I TCNGA 9 cut(s) 209, 217, 283, 327, 374, 388, 426, 783, 867
Hpy188III TCNNGA 4 cut(s) 118, 764, 1279, 1288
Hpy8I GTNNAC 4 cut(s) 232, 436, 696, 1321
Hpy99I CGWCG 4 cut(s) 200, 221, 227, 287
HpyAV CCTTC 6 cut(s) 136, 511, 898, 919, 982, 1000
HpyCH4III ACNGT 2 cut(s) 14, 440
HpyCH4IV ACGT 2 cut(s) 181, 345
HpyCH4V TGCA 5 cut(s) 689, 962, 1036, 1143, 1351
HpyF3I CTNAG 4 cut(s) 324, 477, 876, 1272
HpySE526I ACGT 2 cut(s) 181, 345
Hsp92I GRCGYC 4 cut(s) 195, 219, 225, 285
Hsp92II CATG 4 cut(s) 557, 758, 1040, 1198
HspAI GCGC 2 cut(s) 34, 103
Kpn2I TCCGGA 1 cut(s) 763
KroI GCCGGC 2 cut(s) 74, 934
KroNI GCCGGC 2 cut(s) 76, 936
Ksp22I TGATCA 2 cut(s) 778, 952
LmnI GCTCC 3 cut(s) 284, 595, 868
Lsp1109I GCAGC 1 cut(s) 1203
LweI GCATC 5 cut(s) 92, 630, 676, 844, 1351
MabI ACCWGGT 1 cut(s) 1224
MaeI CTAG 1 cut(s) 1369
MaeII ACGT 2 cut(s) 181, 345
MaeIII GTNAC 4 cut(s) 163, 346, 460, 1123
MbiI CCGCTC 1 cut(s) 279
MboII GAAGA 2 cut(s) 133, 260
MflI RGATCY 5 cut(s) 114, 261, 273, 714, 991
MhlI GDGCHC 3 cut(s) 397, 865, 1271
MlsI TGGCCA 1 cut(s) 725
MluCI AATT 6 cut(s) 574, 627, 826, 919, 1021, 1210
MluNI TGGCCA 1 cut(s) 725
MlyI GAGTC 2 cut(s) 377, 1304
MmeI TCCRAC 3 cut(s) 240, 306, 435
Mox20I TGGCCA 1 cut(s) 725
MroI TCCGGA 1 cut(s) 763
MroNI GCCGGC 2 cut(s) 74, 934
MroXI GAANNNNTTC 2 cut(s) 125, 1010
MscI TGGCCA 1 cut(s) 725
MseI TTAA 3 cut(s) 242, 1209, 1233
Msp20I TGGCCA 1 cut(s) 725
MspA1I CMGCKG 1 cut(s) 45
MspCI CTTAAG 1 cut(s) 1232
MspR9I CCNGG 9 cut(s) 8, 92, 302, 416, 466, 604, 901, 1095, 1226
MvaI CCWGG 2 cut(s) 8, 1226
MvnI CGCG 2 cut(s) 103, 105
NaeI GCCGGC 2 cut(s) 76, 936
NciI CCSGG 7 cut(s) 92, 302, 416, 466, 604, 901, 1095
NgoMIV GCCGGC 2 cut(s) 74, 934
NlaIII CATG 4 cut(s) 557, 758, 1040, 1198
NlaIV GGNNCC 7 cut(s) 187, 211, 263, 364, 864, 873, 882
NmeAIII GCCGAG 3 cut(s) 104, 295, 339
NmuCI GTSAC 3 cut(s) 163, 346, 1123
NotI GCGGCCGC 1 cut(s) 106
PcsI WCGNNNNNNNCGW 3 cut(s) 213, 225, 303
PdiI GCCGGC 2 cut(s) 76, 936
PdmI GAANNNNTTC 2 cut(s) 125, 1010
PfeI GAWTC 1 cut(s) 751
PflFI GACNNNGTC 1 cut(s) 227
PfoI TCCNGGA 1 cut(s) 1093
PleI GAGTC 2 cut(s) 377, 1303
PpsI GAGTC 2 cut(s) 377, 1303
Ppu21I YACGTR 1 cut(s) 182
PsiI TTATAA 1 cut(s) 573
Psp6I CCWGG 2 cut(s) 6, 1224
PspEI GGTNACC 1 cut(s) 460
PspGI CCWGG 2 cut(s) 6, 1224
PspN4I GGNNCC 7 cut(s) 187, 211, 263, 364, 864, 873, 882
PspPI GGNCC 7 cut(s) 4, 25, 94, 362, 612, 872, 881
PsuI RGATCY 5 cut(s) 114, 261, 273, 714, 991
PsyI GACNNNGTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 1028
RsaNI GTAC 1 cut(s) 1027
SalI GTCGAC 1 cut(s) 1319
SaqAI TTAA 3 cut(s) 242, 1209, 1233
Sau96I GGNCC 7 cut(s) 4, 25, 94, 362, 612, 872, 881
SchI GAGTC 2 cut(s) 377, 1304
ScrFI CCNGG 9 cut(s) 8, 92, 302, 416, 466, 604, 901, 1095, 1226
SduI GDGCHC 3 cut(s) 397, 865, 1271
SexAI ACCWGGT 1 cut(s) 1224
SfaNI GCATC 5 cut(s) 92, 630, 676, 844, 1351
SfiI GGCCNNNNNGGCC 1 cut(s) 880
SmlI CTYRAG 2 cut(s) 1186, 1232
SmoI CTYRAG 2 cut(s) 1186, 1232
Sse9I AATT 6 cut(s) 574, 627, 826, 919, 1021, 1210
SspMI CTAG 1 cut(s) 1369
StyD4I CCNGG 9 cut(s) 6, 90, 300, 414, 464, 602, 899, 1093, 1224
TaaI ACNGT 2 cut(s) 14, 440
TaiI ACGT 2 cut(s) 184, 348
TaqI TCGA 2 cut(s) 246, 1320
TasI AATT 6 cut(s) 574, 627, 826, 919, 1021, 1210
TfiI GAWTC 1 cut(s) 751
Tru1I TTAA 3 cut(s) 242, 1209, 1233
Tru9I TTAA 3 cut(s) 242, 1209, 1233
TscAI CASTG 2 cut(s) 839, 1353
TseFI GTSAC 3 cut(s) 163, 346, 1123
TseI GCWGC 1 cut(s) 1191
Tsp45I GTSAC 3 cut(s) 163, 346, 1123
TspDTI ATGAA 3 cut(s) 7, 542, 743
TspRI CASTG 2 cut(s) 839, 1353
Tth111I GACNNNGTC 1 cut(s) 227
Vha464I CTTAAG 1 cut(s) 1232
XapI RAATTY 1 cut(s) 1021
XmiI GTMKAC 1 cut(s) 1320
XmnI GAANNNNTTC 2 cut(s) 125, 1010
XspI CTAG 1 cut(s) 1369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.