Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005095

Physical Location & Seq

Genomic Coordinates Reverse (-)

60913744 .. 60914064

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG334500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGCTTGCTGGGTATTGGGCCAAGTTGCCTTTGATTAGGAAGCTGATGCTTTCGCATCCCGAGGTGGAGTGGATTTGGTGGATGGATAGTGATGTAATGTTTACTGATATGGTGTTTGAGATCCCATTGGGGAAGTATGACAAGCATAATCTTGTTATTCATGGCTACCCGAATTTGCTGCTTGATCAGAAGTCTTGGATTGCTTTGAACACTGGGAGTTTTTTGTTTAGGAATTGCCAGTGGTCTTTGGATTTGCTTGATGCTTGGGCTCCGATGGGTCTGAAGGAGCCGATAAGAGAGGAAGCTGGAAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

106

Amino Acids

12.54

Weight (kDa)

5.23

Isoelectric Point (pI)

18.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	2 - 97	7.5e-28	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74380 AT5G07720
fragaria_vesca	FvH4_5g14540 FvH4_5g14540
malus_domestica	MD06G1197600.v1.1 MD14G1205000.v1.1
prunus_persica	Prupe.5G198300_v2.0.a1
pyrus_communis	pycom14g16940
rosa_chinensis	RchiOBHm_Chr1g0355441 RchiOBHm_Chr6g0275691 RchiOBHm_Chr7g0182111 RchiOBHm_Chr7g0199921
rosa_laevigata	RLG00000005150 RLG00000007126 RLG00000018754 RLG00000027626 RLG00000033700
rosa_multiflora	Rmu_co8179518.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271500
rosa_rugosa	Rorug06G0445700
rosa_samantha	Rh1BG320500 Rh1CG334500 Rh1DG351200 Rh6CG214000 Rh6DG203300 Rh7AG048400 Rh7BG048200 Rh7DG047600
rosa_wichuraiana	Rw0G021050 Rw7G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	211
AluBI	AGCT	3 cut(s)	7, 46, 308
AluI	AGCT	3 cut(s)	7, 46, 308
AlwI	GGATC	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	21
AvaI	CYCGRG	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	79, 271
BcgI	CGANNNNNNTGC	2 cut(s)	163, 197
BclI	TGATCA	1 cut(s)	187
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	21
BmiI	GGNNCC	2 cut(s)	273, 291
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	3 cut(s)	39, 67, 253
BmuI	ACTGGG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	63
Bse1I	ACTGG	2 cut(s)	220, 241
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	58, 90
BseNI	ACTGG	2 cut(s)	220, 241
BseXI	GCAGC	1 cut(s)	168
BseYI	CCCAGC	1 cut(s)	11
BshFI	GGCC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	62
BsnI	GGCC	1 cut(s)	23
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	123, 187
BspANI	GGCC	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	273, 291
BspPI	GGATC	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	220, 241
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	2 cut(s)	123, 187
BstC8I	GCNNGC	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	58, 90
BstKTI	GATC	2 cut(s)	126, 190
BstMBI	GATC	2 cut(s)	123, 187
BstV1I	GCAGC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	58, 90
BtsIMutI	CAGTG	2 cut(s)	213, 248
Cac8I	GCNNGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	21
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	7 cut(s)	7, 23, 46, 168, 272, 292, 308
CviKI_1	RGCY	7 cut(s)	7, 23, 46, 168, 272, 292, 308
DpnI	GATC	2 cut(s)	125, 189
DpnII	GATC	2 cut(s)	123, 187
Eco24I	GRGCYC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	62
EcoT38I	GRGCYC	1 cut(s)	274
FaeI	CATG	1 cut(s)	167
FaiI	YATR	4 cut(s)	113, 141, 150, 165
FatI	CATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	182
FokI	GGATG	2 cut(s)	45, 97
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	182
GsaI	CCCAGC	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	23
Hin1II	CATG	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	105
Hpy188I	TCNGA	3 cut(s)	192, 276, 285
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	105
HpyAV	CCTTC	2 cut(s)	280, 306
Hsp92II	CATG	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	123, 187
LmnI	GCTCC	3 cut(s)	4, 277, 289
LpnPI	CCDG	3 cut(s)	201, 254, 294
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	3 cut(s)	39, 67, 253
MalI	GATC	2 cut(s)	125, 189
MboI	GATC	2 cut(s)	123, 187
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	2 cut(s)	175, 235
MnlI	CCTC	2 cut(s)	58, 295
NdeII	GATC	2 cut(s)	123, 187
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	273, 291
PkrI	GCNGC	1 cut(s)	183
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	2 cut(s)	273, 291
PspPI	GGNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	123
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	2 cut(s)	123, 187
Sau96I	GGNCC	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	5 cut(s)	9, 48, 69, 310, 317
SfaNI	GCATC	3 cut(s)	39, 67, 253
Sse9I	AATT	2 cut(s)	175, 235
TasI	AATT	2 cut(s)	175, 235
TscAI	CASTG	2 cut(s)	220, 248
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	152
TspRI	CASTG	2 cut(s)	220, 248
XapI	RAATTY	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.