Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8179518.1

Orthogroup ID

OG0005095

Physical Location & Seq

Genomic Coordinates Forward (+)

386 .. 684

Gene Structure 299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8179518.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 299 bp

atgggtcaggacaatttcaccccccagaagcggagctcaagtgggctacccaccaccaccggcaccggcacctcagcccgagcagcctccgccggccgcgtcctgccacgtggccgccagatccagaagactttcaacaacatcaaaatcaccatcctctgcggcttcgtcaccatcctggtcctacgtggcacgatcggagtgggcaacctcggcagctccgaggccgacgccgtcaaccagaacttaatcgaggagacgaatcggatcctggccgagatccgatccgacagcgaccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

100

Amino Acids

10.57

Weight (kDa)

9.76

Isoelectric Point (pI)

48.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74380 AT5G07720
fragaria_vesca	FvH4_5g14540 FvH4_5g14540
malus_domestica	MD06G1197600.v1.1 MD14G1205000.v1.1
prunus_persica	Prupe.5G198300_v2.0.a1
pyrus_communis	pycom14g16940
rosa_chinensis	RchiOBHm_Chr1g0355441 RchiOBHm_Chr6g0275691 RchiOBHm_Chr7g0182111 RchiOBHm_Chr7g0199921
rosa_laevigata	RLG00000005150 RLG00000007126 RLG00000018754 RLG00000027626 RLG00000033700
rosa_multiflora	Rmu_co8179518.1_g000001
rosa_roxburghii	Rroxscaffold_3G00271500
rosa_rugosa	Rorug06G0445700
rosa_samantha	Rh1BG320500 Rh1CG334500 Rh1DG351200 Rh6CG214000 Rh6DG203300 Rh7AG048400 Rh7BG048200 Rh7DG047600
rosa_wichuraiana	Rw0G021050 Rw7G003950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	62, 68
AccII	CGCG	1 cut(s)	99
AciI	CCGC	5 cut(s)	31, 90, 97, 115, 162
AclWI	GGATC	5 cut(s)	115, 262, 274, 275, 279
AcoI	YGGCCR	3 cut(s)	94, 112, 273
AcvI	CACGTG	1 cut(s)	110
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	1 cut(s)	136
AjnI	CCWGG	2 cut(s)	177, 270
AluBI	AGCT	2 cut(s)	36, 219
AluI	AGCT	2 cut(s)	36, 219
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	1 cut(s)	251
AlwI	GGATC	5 cut(s)	115, 262, 274, 275, 279
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	4 cut(s)	94, 112, 225, 273
ApeKI	GCWGC	2 cut(s)	83, 216
Asp700I	GAANNNNTTC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	10, 142, 163
AvaI	CYCGRG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	267
BanI	GGYRCC	2 cut(s)	62, 68
BanII	GRGCYC	1 cut(s)	38
BbrPI	CACGTG	1 cut(s)	110
BbsI	GAAGAC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	38
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	2 cut(s)	95, 228
BccI	CCATC	2 cut(s)	161, 182
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	179, 272
BcoDI	GTCTC	1 cut(s)	251
BisI	GCNGC	5 cut(s)	84, 97, 115, 163, 217
BlsI	GCNGC	5 cut(s)	85, 98, 116, 164, 218
Bme1390I	CCNGG	2 cut(s)	179, 272
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	3 cut(s)	64, 70, 269
BmrFI	CCNGG	2 cut(s)	179, 272
BpiI	GAAGAC	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	22
BsaAI	YACGTR	2 cut(s)	110, 188
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	211, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse118I	RCCGGY	3 cut(s)	59, 65, 92
BseBI	CCWGG	2 cut(s)	179, 272
BseDI	CCNNGG	2 cut(s)	211, 222
BseGI	GGATG	2 cut(s)	153, 174
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	87
BseRI	GAGGAG	1 cut(s)	269
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	95, 228
Bsh1236I	CGCG	1 cut(s)	99
Bsh1285I	CGRYCG	2 cut(s)	97, 198
BshFI	GGCC	4 cut(s)	96, 114, 227, 275
BshNI	GGYRCC	2 cut(s)	62, 68
BsiEI	CGRYCG	2 cut(s)	97, 198
BsiHKAI	GWGCWC	1 cut(s)	38
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	60, 66, 93
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmAI	GTCTC	1 cut(s)	251
BsmBI	CGTCTC	1 cut(s)	251
BsnI	GGCC	4 cut(s)	96, 114, 227, 275
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	5 cut(s)	120, 195, 267, 279, 284
BspACI	CCGC	5 cut(s)	31, 90, 97, 115, 162
BspANI	GGCC	4 cut(s)	96, 114, 227, 275
BspCNI	CTCAG	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	99
BspLI	GGNNCC	3 cut(s)	64, 70, 269
BspPI	GGATC	5 cut(s)	115, 262, 274, 275, 279
BspT107I	GGYRCC	2 cut(s)	62, 68
BsrFI	RCCGGY	3 cut(s)	59, 65, 92
BssAI	RCCGGY	3 cut(s)	59, 65, 92
BssECI	CCNNGG	2 cut(s)	211, 222
BssMI	GATC	5 cut(s)	120, 195, 267, 279, 284
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	179, 272
BstACI	GRCGYC	1 cut(s)	231
BstBAI	YACGTR	2 cut(s)	110, 188
BstC8I	GCNNGC	1 cut(s)	94
BstDEI	CTNAG	1 cut(s)	73
BstF5I	GGATG	2 cut(s)	153, 174
BstFNI	CGCG	1 cut(s)	99
BstKTI	GATC	5 cut(s)	123, 198, 270, 282, 287
BstMAI	GTCTC	1 cut(s)	251
BstMBI	GATC	5 cut(s)	120, 195, 267, 279, 284
BstMCI	CGRYCG	2 cut(s)	97, 198
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 89, 213
BstNI	CCWGG	2 cut(s)	179, 272
BstSCI	CCNGG	2 cut(s)	177, 270
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	95, 228
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	3 cut(s)	120, 267, 279
BstYI	RGATCY	3 cut(s)	120, 267, 279
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	4 cut(s)	96, 114, 227, 275
BtsCI	GGATG	2 cut(s)	153, 174
Cac8I	GCNNGC	1 cut(s)	94
Cfr10I	RCCGGY	3 cut(s)	59, 65, 92
Cfr13I	GGNCC	1 cut(s)	181
CseI	GACGC	2 cut(s)	88, 239
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	5 cut(s)	122, 197, 269, 281, 286
DpnII	GATC	5 cut(s)	120, 195, 267, 279, 284
EaeI	YGGCCR	3 cut(s)	94, 112, 273
EagI	CGGCCG	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	36
EclXI	CGGCCG	1 cut(s)	94
Eco24I	GRGCYC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	181
Eco52I	CGGCCG	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	36
Eco72I	CACGTG	1 cut(s)	110
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	177, 270
EcoT38I	GRGCYC	1 cut(s)	38
Esp3I	CGTCTC	1 cut(s)	251
Fnu4HI	GCNGC	5 cut(s)	84, 97, 115, 163, 217
FokI	GGATG	2 cut(s)	140, 161
FriOI	GRGCYC	1 cut(s)	38
Fsp4HI	GCNGC	5 cut(s)	84, 97, 115, 163, 217
GluI	GCNGC	5 cut(s)	84, 97, 115, 163, 217
HaeIII	GGCC	4 cut(s)	96, 114, 227, 275
HapII	CCGG	3 cut(s)	60, 66, 93
HgaI	GACGC	2 cut(s)	88, 239
Hin1I	GRCGYC	1 cut(s)	231
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	262
HpaII	CCGG	3 cut(s)	60, 66, 93
HphI	GGTGA	3 cut(s)	10, 142, 163
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	5 cut(s)	200, 223, 267, 284, 289
Hpy188III	TCNNGA	2 cut(s)	8, 124
Hpy8I	GTNNAC	1 cut(s)	238
Hpy99I	CGWCG	1 cut(s)	233
HpyCH4IV	ACGT	2 cut(s)	109, 187
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 89, 213
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	2 cut(s)	109, 187
Hsp92I	GRCGYC	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	92
KroNI	GCCGGC	1 cut(s)	94
Kzo9I	GATC	5 cut(s)	120, 195, 267, 279, 284
LmnI	GCTCC	2 cut(s)	33, 224
Lsp1109I	GCAGC	2 cut(s)	95, 228
MaeII	ACGT	2 cut(s)	109, 187
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	5 cut(s)	122, 197, 269, 281, 286
MboI	GATC	5 cut(s)	120, 195, 267, 279, 284
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	3 cut(s)	120, 267, 279
MhlI	GDGCHC	1 cut(s)	38
MluCI	AATT	1 cut(s)	13
MnlI	CCTC	6 cut(s)	82, 97, 167, 217, 221, 247
MroNI	GCCGGC	1 cut(s)	92
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	1 cut(s)	248
MspI	CCGG	3 cut(s)	60, 66, 93
MspR9I	CCNGG	2 cut(s)	179, 272
MvaI	CCWGG	2 cut(s)	179, 272
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	83, 89, 213
NaeI	GCCGGC	1 cut(s)	94
NdeII	GATC	5 cut(s)	120, 195, 267, 279, 284
NgoMIV	GCCGGC	1 cut(s)	92
NlaIV	GGNNCC	3 cut(s)	64, 70, 269
NmeAIII	GCCGAG	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PdiI	GCCGGC	1 cut(s)	94
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	262
PflFI	GACNNNGTC	1 cut(s)	233
PkrI	GCNGC	5 cut(s)	85, 98, 116, 164, 218
Ple19I	CGATCG	1 cut(s)	198
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
Ppu21I	YACGTR	2 cut(s)	110, 188
Psp124BI	GAGCTC	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	177, 270
PspCI	CACGTG	1 cut(s)	110
PspGI	CCWGG	2 cut(s)	177, 270
PspN4I	GGNNCC	3 cut(s)	64, 70, 269
PspPI	GGNCC	1 cut(s)	181
PsuI	RGATCY	3 cut(s)	120, 267, 279
PsyI	GACNNNGTC	1 cut(s)	233
PvuI	CGATCG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	5 cut(s)	84, 97, 115, 163, 217
Sau3AI	GATC	5 cut(s)	120, 195, 267, 279, 284
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	179, 272
SduI	GDGCHC	1 cut(s)	38
SetI	ASST	6 cut(s)	38, 74, 112, 190, 213, 221
SinI	GGWCC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	1 cut(s)	13
SsiI	CCGC	5 cut(s)	31, 90, 97, 115, 162
SstI	GAGCTC	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	177, 270
TaiI	ACGT	2 cut(s)	112, 190
TaqI	TCGA	1 cut(s)	252
TasI	AATT	1 cut(s)	13
TauI	GCSGC	3 cut(s)	99, 117, 165
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	83, 216
Tsp45I	GTSAC	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.